Genetic heterogeneity of wild-type G4P[6] porcine rotavirus strains detected in a diarrhea outbreak in a regularly vaccinated pig herd

Veterinary Microbiology

Volumn 154, Issue 1-2, 2011, Pages 191-196

  Lorenzetti, Elis ^a   Da Silva Medeiros, Thais Neris ^a   Alfieri, Alice Fernandes ^a   Alfieri, Amauri Alcindo ^a  

^a STATE UNIVERSITY OF LONDRINA   (Brazil)

Author keywords

Diarrhea; Genetic heterogeneity; Genotype; Piglets; RV A

Indexed keywords

NUCLEOTIDE;

ARTICLE; DIARRHEA; EPIDEMIC; FECES ANALYSIS; GENETIC HETEROGENEITY; GENOTYPE; HERD; HERRING; NEWBORN; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SWINE; VACCINATION; VIRUS STRAIN; WILD TYPE;

ANIMALS; ANTIGENS, VIRAL; BRAZIL; CAPSID PROTEINS; DIARRHEA; DISEASE OUTBREAKS; FECES; GENETIC HETEROGENEITY; GENOTYPE; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, RNA; SWINE; SWINE DISEASES; VACCINATION;

ANIMALIA; PORCINE ROTAVIRUS; PORCINE RUBULAVIRUS; ROTAVIRUS; ROTAVIRUS A; SUIDAE; SUS;

EID: 80655149105     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2011.06.026     Document Type: Article

References (35)

1. Abe M., Ito N., Masatani T., Nakagawa K., Yamaoka S., Kanamaru Y., Suzuki H., Shibano K., Arashi Y., Sugiyama M. Whole genome characterization of new bovine rotavirus G21P[29] and G24P[33] strains provides evidence for interspecies transmission. J. Gen. Virol. 2011, 92:952-960.
2. Alfieri A.A., Leite J.P., Nakagomi O., Kaga E., Woods P.A., Glass R.I., Gentsch J.R. Characterization of human rotavirus genotype P[8]G5 from Brazil by probe-hybridization and sequence. Arch. Virol. 1996, 141:2353-2364.
3. Alfieri A.A., Parazzi M.E., Takiuchi E., Médici K.C., Alfieri A.F. Frequency of group A rotavirus in diarrhoeic calves in Brazilian cattle herds, 1998-2002. Trop. Anim. Health Prod. 2006, 38:521-526.
4. Bányai K., Bogdán A., Domonkos G., Kisfali P., Molnár P., Tóth A., Melegh B., Martella V., Gentsch J.R., Szucs G. Genetic diversity and zoonotic potential of human rotavirus strains, 2003-2006, Hungary. J. Med. Virol. 2009, 81:362-370.
5. Barreiros M.A.B., Alfieri A.A., Alfieri A.F., Médici K.C., Leite J.P.G. An outbreak of diarrhoea in one-week-old piglets caused by group A rotavirus genotypes P[7], G3 and P[7] G5. Vet. Res. Commun. 2003, 27:505-512.
6. Barreiros M.A.B., Alfieri A.F., Médici K.C., Leite J.P.G., Alfieri A.A. G and P genotypes of group A rotavirus from diarrhoeic calves born to cows vaccinated against the NCDV (P[1], G6) rotavirus strain. J. Vet. Med. B 2004, 51:104-109.
7. Bohl E.H., Theil K.W., Saif L.J. Isolation and serotyping of porcine rotaviruses and antigenic comparison with other rotaviruses. J. Clin. Microbiol. 1984, 19:105-111.
8. Bok K., Matson D.O., Gomez J.A. Genetic variation of capsid protein VP7 in genotype G4 human rotavirus strains: simultaneous emergence and spread of different lineages in Argentina. J. Clin. Microbiol. 2002, 40:2016-2022.
9. Collins P.J., Martella V., Sleator R.D., Fanning S., O'Shea H. Detection and characterization of group A rotavirus in asymptomatic piglets in southern Ireland. Arch. Virol. 2010, 155:1247-1259.
10. Das B.K., Gentsch J.R., Cicirello H.G., Woods P.A., Gupta A., Ramachandran M., Kumar R., Bhan M.K., Glass R.I. Characterization of rotavirus strains from newborns in New Delhi, India. J. Clin. Microbiol. 1994, 32:1820-1822.
11. Duan Z.-J., Li D.-D., Zhang Q., Liu N., Huang C.-P., Jiang X., Jiang B., Glass R., Steele D., Tang J.-Y., Wang Z.-S., Fang Z.-Y. Novel human rotavirus of genotype G5P[6] identified in a stool specimen from a Chinese girl with diarrhea. J. Clin. Microbiol. 2007, 45:1614-1617.
12. Estes M.K., Kapikian A.Z. Rotaviruses. Fields Virology 2007, vol. 2:1917-1974. Lippincott, Williams & Wilkins/Wolters Kluwer, Philadelphia, PA. 5th ed.
13. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., Das B.K., Bhan M.K. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 1992, 30:1365-1373.
14. Gorziglia M., Green K., Nishikawa K., Taniguchi K., Jones R., Kapikian A.Z., Chanock R.M. Sequence of the fourth gene of human rotaviruses recovered from asymptomatic or symptomatic infections. J. Virol. 1988, 62:2978-2984.
15. Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., Fang Z.-Y. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 1990, 28:276-282.
16. Gouvea V., Santos N., Timenetsky M.C. VP4 typing of bovine and porcine group A rotaviruses by PCR. J. Clin. Microbiol. 1994, 32:1333-1337.
17. Gouvea V., Santos N., Timenetsky M.C. Identification of bovine and porcine rotavirus G types by PCR. J. Clin. Microbiol. 1994, 32:l338-l340.
18. Gurgel R.Q., Cuevas L.E., Vieira S.C.F., Barros V.C.F., Fontes P.B., Salustino E.F., Nakagomi O., Nakagomi T., Dove W., Cunliffe N., Hart C.A. Predominance of rotavirus P[4]G2 in a vaccinated population, Brazil. Emerg. Infect. Dis. 2007, 13:1571-1573.
19. Laird A.R., Ibarra V., Ruiz-Palacios G., Guerrero M.L., Glass R.I., Gentsch J.R. Unexpected detection of animal VP7 genes among common rotavirus strains isolated from children in Mexico. J. Clin. Microbiol. 2003, 41:4400-4403.
20. Li B., Gorziglia M. VP4 serotype of the Gottfried strain of porcine rotavirus. J. Clin. Microbiol. 1993, 31:3075-3077.
21. Linares R.C., Barry A.F., Alfieri A.F., Médici K.C., Feronato C., Grieder W., Alfieri A.A. Frequency of group A rotavirus in piglet stool samples from non-vaccinated Brazilian pig herds. Braz. Arch. Biol. Technol. 2009, 52:63-68.
22. Martella V., Bányai K., Ciarlet M., Iturriza-Gomara M., Lorusso E., De Grazia S., Arista S., Decaro N., Elia G., Cavalli A., Corrente M., Lavazza A., Baselga R., Buonavoglia C. Relationships among porcine and human P[6] rotaviruses: evidence that the different human P[6] lineages have originated from multiple interspecies transmission events. Virology 2006, 344:509-519.
23. Martella V., Bányai K., Matthijnssens J., Buonavoglia C., Ciarlet M. Zoonotic aspects of rotaviruses. Vet. Microbiol. 2010, 140:246-255.
24. Mascarenhas J.D.P., Leite J.P.G., Lima J.C., Heinemann M.B., Oliveira D.S., Araújo I.T., Soares L.S., Gusmão R.H.P., Gabbay Y.B., Linhares A.C. Detection of a neonatal human rotavirus strain with VP4 and NSP4 genes of porcine origin. J. Med. Microbiol. 2007, 56:524-532.
25. Mascarenhas J.D.P., Linhares A.C., Gabbay Y.B., Lima C.S., Guerra S.F.S., Soares L.S., Oliveira D.S., Lima J.C., Macêdo O., Leite J.P.G. Molecular characterization of VP4 and NSP4 genes from rotavirus strains infecting neonates and young children in Belem, Brazil. Virus Res. 2007, 126:149-158.
26. Matthijnssens J., Bilcke J., Ciarlet M., Martella V., Bányai K., Rahman M., Zeller M., Beutels P., Damme P.V., Ranst M.V. Rotavirus disease and vaccination: impact on genotype diversity. Fut. Microbiol. 2009, 4:1303-1316.
27. Mukherjee A., Dutta D., Ghosh S., Bagchi P., Chattopadhyay S., Nagashima S., Kobayashi N., Dutta P., Krishnan T., Naik T.N., Chawla-Sarkar M. Full genomic analysis of a human group A rotavirus G9P[6] strain from Eastern India provides evidence for porcine-to-human interspecies transmission. Arch. Virol. 2009, 154:733-746.
28. Palombo E.A., Bugg H.C., Masendycz P.J., Bishop R.F. Sequence of the VP7 gene of an atypical human rotavirus: evidence for genetic and antigenic drift. DNA Seq. 1997, 7:307-311.
29. Parra G.I., Vidales G., Gomez J.A., Fernandez F.M., Parreño V., Bok K. Phylogenetic analysis of porcine rotavirus in Argentina: increasing diversity of G4 strains and evidence of interspecies transmission. Vet. Microbiol. 2008, 126:243-250.
30. Rácz M.L., Kroeff S.S., Munford V., Caruzo T.A.R., Durigon E.L., Hayashi Y., Gouvea V., Palombo E.A. Molecular characterization of porcine rotaviruses from the southern region of Brazil: characterization of an atypical genotype G[9] strain. J. Clin. Microbiol. 2000, 38:2443-2446.
31. Ruiz A.M., Lopez I.V., Lopez S., Espejo R.T., Arias C.F. Molecular and antigenic characterization of porcine rotavirus YM, a possible new rotavirus serotype. J. Virol. 1988, 62:4331-4336.
32. Steyer A., Poljsak-Prijatelj M., Barlic-Maganja D., Marin J. Human, porcine and bovine rotaviruses in Slovenia: evidence of interspecies transmission and genome reassortment. J. Gen. Virol. 2008, 89:1690-1698.
33. Stupka J.A., Carvalho P., Amarilla A.A., Massana M., Parra G.I. National rotavirus surveillance in Argentina: high incidence of G9P[8] strains and detection of G4P[6] strains with porcine characteristics. Infect. Genet. Evol. 2009, 9:1225-1231.
34. Teodoroff T.A., Tsunemitsu H., Okamoto K., Katsuda K., Kohmoto M., Kawashima K., Nakagomi T., Nakagomi O. Predominance of porcine rotavirus G9 in Japanese piglets with diarrhea: close relationship of their VP7 genes with those of recent human G9 strains. J. Clin. Microbiol. 2005, 43:1377-1384.
35. Winiarczyk S., Paul P.S., Mummidi S., Panek R., Gradzki Z. Survey of porcine rotavirus G and P genotype in Poland and the United States using RT-PCR. J. Vet. Med. B 2002, 49:373-378.