메뉴 건너뛰기




Volumn 786, Issue , 2012, Pages 359-394

BioTapestry: A tool to visualize the dynamic properties of gene regulatory networks

Author keywords

Computational biology; Drawing gene networks; Genetic regulatory networks; Layout of gene networks; Modeling; Network modeling; Network visualization; Systems biology software

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER PROGRAM; GENE REGULATORY NETWORK; GENETICS; METHODOLOGY; SYSTEMS BIOLOGY;

EID: 80555153990     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-292-2_21     Document Type: Article
Times cited : (57)

References (24)
  • 1
    • 17644385076 scopus 로고    scopus 로고
    • Computational representation of developmental genetic regulatory networks
    • DOI 10.1016/j.ydbio.2005.04.023, PII S0012160605002575
    • Longabaugh, W. J. R., Davidson, E. H., and Bolouri, H. (2005) Computational representation of developmental genetic regulatory networks, Developmental biology 283, 1-16. (Pubitemid 40828838)
    • (2005) Developmental Biology , vol.283 , Issue.1 , pp. 1-16
    • Longabaugh, W.J.R.1    Davidson, E.H.2    Bolouri, H.3
  • 2
    • 64549161094 scopus 로고    scopus 로고
    • Visualization, documentation, analysis, and communication of large-scale gene regulatory networks
    • Longabaugh, W. J. R., Davidson, E. H., and Bolouri, H. (2009) Visualization, documentation, analysis, and communication of large-scale gene regulatory networks, Biochimica et biophysica acta 1789, 363-374.
    • (2009) Biochimica et Biophysica Acta , vol.1789 , pp. 363-374
    • Longabaugh, W.J.R.1    Davidson, E.H.2    Bolouri, H.3
  • 4
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software Environment for integrated models of biomolecular interaction networks
    • DOI 10.1101/gr.1239303
    • Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks, Genome research 13, 2498-2504. (Pubitemid 37428274)
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 5
    • 34250612602 scopus 로고    scopus 로고
    • Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning
    • DOI 10.1242/dev.001966
    • Vokes, S. A., Ji, H., McCuine, S., Tenzen, T., Giles, S., Zhong, S., Longabaugh, W. J. R., Davidson, E. H., Wong, W. H., and McMahon, A. P. (2007) Genomic characterization of Gliactivator targets in sonic hedgehog-mediated neural patterning, Development 134, 1977-1989. URL: http://www.mcb.harvard.edu/ McMahon/BioTapestry/index.html (Pubitemid 46939242)
    • (2007) Development , vol.134 , Issue.10 , pp. 1977-1989
    • Vokes, S.A.1    Ji, H.2    McCuine, S.3    Tenzen, T.4    Giles, S.5    Zhong, S.6    Longabaugh, W.J.R.7    Davidson, E.H.8    Wong, W.H.9    McMahon, A.P.10
  • 10
    • 26444591973 scopus 로고    scopus 로고
    • Genomic regulatory networks and animal development
    • DOI 10.1016/j.devcel.2005.09.005, PII S1534580705003400
    • Stathopoulos, A., and Levine, M. (2005) Genomic regulatory networks and animal development, Developmental cell 9, 449-462. (Pubitemid 41430729)
    • (2005) Developmental Cell , vol.9 , Issue.4 , pp. 449-462
    • Stathopoulos, A.1    Levine, M.2
  • 14
    • 48249083822 scopus 로고    scopus 로고
    • How to build transcriptional network models of mammalian pattern formation
    • Kioussi, C., and Gross, M. K. (2008) How to build transcriptional network models of mammalian pattern formation, PloS one 3, e2179.
    • (2008) PloS One , vol.3
    • Kioussi, C.1    Gross, M.K.2
  • 17
    • 58749089450 scopus 로고    scopus 로고
    • A protocol for unraveling gene regulatory networks
    • Materna, S. C., and Oliveri, P. (2008) A protocol for unraveling gene regulatory networks, Nature protocols 3, 1876-1887.
    • (2008) Nature Protocols , vol.3 , pp. 1876-1887
    • Materna, S.C.1    Oliveri, P.2
  • 18
    • 57949111578 scopus 로고    scopus 로고
    • Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives
    • Tamplin, O. J., Kinzel, D., Cox, B. J., Bell, C. E., Rossant, J., and Lickert, H. (2008) Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives, BMC genomics 9, 511.
    • (2008) BMC Genomics , vol.9 , pp. 511
    • Tamplin, O.J.1    Kinzel, D.2    Cox, B.J.3    Bell, C.E.4    Rossant, J.5    Lickert, H.6
  • 21
    • 67349171520 scopus 로고    scopus 로고
    • A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo
    • Su, Y. H., Li, E., Geiss, G. K., Longabaugh, W. J. R., Krämer, A., and Davidson, E. H. (2009) A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo, Developmental biology 329, 410-421.
    • (2009) Developmental Biology , vol.329 , pp. 410-421
    • Su, Y.H.1    Li, E.2    Geiss, G.K.3    Longabaugh, W.J.R.4    Krämer, A.5    Davidson, E.H.6
  • 24
    • 33646743767 scopus 로고    scopus 로고
    • The Gaggle: An opensource software system for integrating bioinformatics software and data sources
    • Shannon, P. T., Reiss, D. J., Bonneau, R., and Baliga, N. S. (2006) The Gaggle: an opensource software system for integrating bioinformatics software and data sources, BMC bioinformatics 7, 176.
    • (2006) BMC Bioinformatics , vol.7 , pp. 176
    • Shannon, P.T.1    Reiss, D.J.2    Bonneau, R.3    Baliga, N.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.