-
1
-
-
67650741685
-
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
-
Barbe V, Cruveiller S, Kunst F, Lenoble P, Meurice G, et al. (2009) From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology 155: 1758-1775.
-
(2009)
Microbiology
, vol.155
, pp. 1758-1775
-
-
Barbe, V.1
Cruveiller, S.2
Kunst, F.3
Lenoble, P.4
Meurice, G.5
-
2
-
-
0345668475
-
Essential Bacillus subtilis genes
-
Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, et al. (2003) Essential Bacillus subtilis genes. Proc Natl Acad Sci U S A 100: 4678-4683.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 4678-4683
-
-
Kobayashi, K.1
Ehrlich, S.D.2
Albertini, A.3
Amati, G.4
Andersen, K.K.5
-
3
-
-
70350159135
-
The transcriptionally active regions in the genome of Bacillus subtilis
-
Rasmussen S, Nielsen HB, Jarmer H, (2009) The transcriptionally active regions in the genome of Bacillus subtilis. Mol Microbiol 73: 1043-1057.
-
(2009)
Mol Microbiol
, vol.73
, pp. 1043-1057
-
-
Rasmussen, S.1
Nielsen, H.B.2
Jarmer, H.3
-
4
-
-
34047161888
-
Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches
-
Wolff S, Antelmann H, Albrecht D, Becher D, Bernhardt J, et al. (2007) Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches. J Chromatogr B Analyt Technol Biomed Life Sci 849: 129-140.
-
(2007)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.849
, pp. 129-140
-
-
Wolff, S.1
Antelmann, H.2
Albrecht, D.3
Becher, D.4
Bernhardt, J.5
-
5
-
-
79960421164
-
From the genome sequence to the protein inventory of Bacillus subtilis
-
Becher D, Büttner K, Moche M, Hessling B, Hecker M, (2011) From the genome sequence to the protein inventory of Bacillus subtilis. Proteomics 11: 2971-2980.
-
(2011)
Proteomics
, vol.11
, pp. 2971-2980
-
-
Becher, D.1
Büttner, K.2
Moche, M.3
Hessling, B.4
Hecker, M.5
-
6
-
-
0037317457
-
Bacillus subtilis during feast and famine: visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis
-
Bernhardt J, Weibezahn J, Scharf C, Hecker M, (2003) Bacillus subtilis during feast and famine: visualization of the overall regulation of protein synthesis during glucose starvation by proteome analysis. Genome Res 13: 224-237.
-
(2003)
Genome Res
, vol.13
, pp. 224-237
-
-
Bernhardt, J.1
Weibezahn, J.2
Scharf, C.3
Hecker, M.4
-
7
-
-
5644302167
-
A comprehensive proteome map of growing Bacillus subtilis cells
-
Eymann C, Dreisbach A, Albrecht D, Bernhardt J, Becher D, et al. (2004) A comprehensive proteome map of growing Bacillus subtilis cells. Proteomics 4: 2849-2876.
-
(2004)
Proteomics
, vol.4
, pp. 2849-2876
-
-
Eymann, C.1
Dreisbach, A.2
Albrecht, D.3
Bernhardt, J.4
Becher, D.5
-
8
-
-
79251551042
-
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis
-
Otto A, Bernhardt J, Meyer H, Schaffer M, Herbst F-A, et al. (2010) Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis. Nat Commun 1: 137.
-
(2010)
Nat Commun
, vol.1
, pp. 137
-
-
Otto, A.1
Bernhardt, J.2
Meyer, H.3
Schaffer, M.4
Herbst, F.-A.5
-
9
-
-
33646344978
-
STEM: a tool for the analysis of short time series gene expression data
-
Ernst J, Bar-Joseph Z, (2006) STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics 7: 191.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 191
-
-
Ernst, J.1
Bar-Joseph, Z.2
-
10
-
-
2942549112
-
Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments
-
Breitling R, Amtmann A, Herzyk P, (2004) Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments. BMC Bioinformatics 5: 34.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 34
-
-
Breitling, R.1
Amtmann, A.2
Herzyk, P.3
-
11
-
-
34249861750
-
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes
-
Blom E-J, Bosman DWJ, van Hijum SAFT, Breitling R, Tijsma L, et al. (2007) FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinformatics 23: 1161-1163.
-
(2007)
Bioinformatics
, vol.23
, pp. 1161-1163
-
-
Blom, E.-J.1
Bosman, D.W.J.2
van Hijum, S.A.F.T.3
Breitling, R.4
Tijsma, L.5
-
12
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S, (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
13
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat Genet 25: 25-29.
-
(2000)
The Gene Ontology Consortium Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
14
-
-
38549162091
-
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
-
Sierro N, Makita Y, de Hoon M, Nakai K, (2008) DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res 36: D93-96.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 93-96
-
-
Sierro, N.1
Makita, Y.2
de Hoon, M.3
Nakai, K.4
-
15
-
-
33645803827
-
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli
-
Butcher BG, Helmann JD, (2006) Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli. Mol Microbiol 60: 765-782.
-
(2006)
Mol Microbiol
, vol.60
, pp. 765-782
-
-
Butcher, B.G.1
Helmann, J.D.2
-
16
-
-
0041343167
-
Microbiology. Cannibals defy starvation and avoid sporulation
-
Engelberg-Kulka H, Hazan R, (2003) Microbiology. Cannibals defy starvation and avoid sporulation. Science 301: 467-468.
-
(2003)
Science
, vol.301
, pp. 467-468
-
-
Engelberg-Kulka, H.1
Hazan, R.2
-
18
-
-
77957977117
-
Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis
-
Liu W-T, Yang Y-L, Xu Y, Lamsa A, Haste NM, et al. (2010) Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis. Proc Natl Acad Sci U S A 107: 16286-16290.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 16286-16290
-
-
Liu, W.-T.1
Yang, Y.-L.2
Xu, Y.3
Lamsa, A.4
Haste, N.M.5
-
19
-
-
79953323267
-
Cannibalism: a social behavior in sporulating Bacillus subtilis
-
González-Pastor JE, (2011) Cannibalism: a social behavior in sporulating Bacillus subtilis. FEMS Microbiol Rev 35: 415-424.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 415-424
-
-
González-Pastor, J.E.1
-
20
-
-
33746088411
-
Evidence for a novel protease governing regulated intramembrane proteolysis and resistance to antimicrobial peptides in Bacillus subtilis
-
Ellermeier CD, Losick R, (2006) Evidence for a novel protease governing regulated intramembrane proteolysis and resistance to antimicrobial peptides in Bacillus subtilis. Genes Dev 20: 1911-1922.
-
(2006)
Genes Dev
, vol.20
, pp. 1911-1922
-
-
Ellermeier, C.D.1
Losick, R.2
-
21
-
-
14544290034
-
High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis
-
Fujita M, González-Pastor JE, Losick R, (2005) High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis. J Bacteriol 187: 1357-1368.
-
(2005)
J Bacteriol
, vol.187
, pp. 1357-1368
-
-
Fujita, M.1
González-Pastor, J.E.2
Losick, R.3
-
22
-
-
34548008613
-
The biological role of death and lysis in biofilm development
-
Bayles KW, (2007) The biological role of death and lysis in biofilm development. Nat Rev Microbiol 5: 721-726.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 721-726
-
-
Bayles, K.W.1
-
23
-
-
40849104947
-
Molecular control of bacterial death and lysis
-
table of contents
-
Rice KC, Bayles KW, (2008) Molecular control of bacterial death and lysis. Microbiol Mol Biol Rev 72: 85-109, table of contents.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 85-109
-
-
Rice, K.C.1
Bayles, K.W.2
-
24
-
-
67649388224
-
An overlap between the control of programmed cell death in Bacillus anthracis and sporulation
-
Chandramohan L, Ahn J-S, Weaver KE, Bayles KW, (2009) An overlap between the control of programmed cell death in Bacillus anthracis and sporulation. J Bacteriol 191: 4103-4110.
-
(2009)
J Bacteriol
, vol.191
, pp. 4103-4110
-
-
Chandramohan, L.1
Ahn, J.-S.2
Weaver, K.E.3
Bayles, K.W.4
-
25
-
-
63449087899
-
DISCLOSE: DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites
-
Blom E-J, van Hijum SAFT, Hofstede KJ, Silvis R, Roerdink JBTM, et al. (2008) DISCLOSE: DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites. BMC Bioinformatics 9: 535.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 535
-
-
Blom, E.-J.1
van Hijum, S.A.F.T.2
Hofstede, K.J.3
Silvis, R.4
Roerdink, J.B.T.M.5
-
26
-
-
0036275506
-
Transcription analysis of the Bacillus subtilis PucR regulon and identification of a cis-acting sequence required for PucR-regulated expression of genes involved in purine catabolism
-
Beier L, Nygaard P, Jarmer H, Saxild HH, (2002) Transcription analysis of the Bacillus subtilis PucR regulon and identification of a cis-acting sequence required for PucR-regulated expression of genes involved in purine catabolism. J Bacteriol 184: 3232-3241.
-
(2002)
J Bacteriol
, vol.184
, pp. 3232-3241
-
-
Beier, L.1
Nygaard, P.2
Jarmer, H.3
Saxild, H.H.4
-
27
-
-
0346252345
-
Two MerR homologues that affect copper induction of the Bacillus subtilis copZA operon
-
Gaballa A, Cao M, Helmann JD, (2003) Two MerR homologues that affect copper induction of the Bacillus subtilis copZA operon. Microbiology 149: 3413-3421.
-
(2003)
Microbiology
, vol.149
, pp. 3413-3421
-
-
Gaballa, A.1
Cao, M.2
Helmann, J.D.3
-
28
-
-
1242318677
-
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
-
Mostertz J, Scharf C, Hecker M, Homuth G, (2004) Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology 150: 497-512.
-
(2004)
Microbiology
, vol.150
, pp. 497-512
-
-
Mostertz, J.1
Scharf, C.2
Hecker, M.3
Homuth, G.4
-
29
-
-
16844384949
-
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis
-
Höper D, Völker U, Hecker M, (2005) Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis. J Bacteriol 187: 2810-2826.
-
(2005)
J Bacteriol
, vol.187
, pp. 2810-2826
-
-
Höper, D.1
Völker, U.2
Hecker, M.3
-
30
-
-
79956199071
-
Comparative transcriptome analysis of Bacillus subtilis responding to dissolved oxygen in adenosine fermentation
-
Yu W-B, Gao S-H, Yin C-Y, Zhou Y, Ye B-C, (2011) Comparative transcriptome analysis of Bacillus subtilis responding to dissolved oxygen in adenosine fermentation. PLoS ONE 6: e20092.
-
(2011)
PLoS ONE
, vol.6
-
-
Yu, W.-B.1
Gao, S.-H.2
Yin, C.-Y.3
Zhou, Y.4
Ye, B.-C.5
-
31
-
-
34250012624
-
A degradation product of the salicylic acid pathway triggers oxidative stress resulting in down-regulation of Bacillus subtilis biofilm formation on Arabidopsis thaliana roots
-
Rudrappa T, Quinn WJ, Stanley-Wall NR, Bais HP, (2007) A degradation product of the salicylic acid pathway triggers oxidative stress resulting in down-regulation of Bacillus subtilis biofilm formation on Arabidopsis thaliana roots. Planta 226: 283-297.
-
(2007)
Planta
, vol.226
, pp. 283-297
-
-
Rudrappa, T.1
Quinn, W.J.2
Stanley-Wall, N.R.3
Bais, H.P.4
-
32
-
-
0033891425
-
Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions
-
Ye RW, Tao W, Bedzyk L, Young T, Chen M, et al. (2000) Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions. J Bacteriol 182: 4458-4465.
-
(2000)
J Bacteriol
, vol.182
, pp. 4458-4465
-
-
Ye, R.W.1
Tao, W.2
Bedzyk, L.3
Young, T.4
Chen, M.5
-
33
-
-
32044465724
-
A three-protein signaling pathway governing immunity to a bacterial cannibalism toxin
-
Ellermeier CD, Hobbs EC, Gonzalez-Pastor JE, Losick R, (2006) A three-protein signaling pathway governing immunity to a bacterial cannibalism toxin. Cell 124: 549-559.
-
(2006)
Cell
, vol.124
, pp. 549-559
-
-
Ellermeier, C.D.1
Hobbs, E.C.2
Gonzalez-Pastor, J.E.3
Losick, R.4
-
34
-
-
33745892606
-
Phosphate starvation induces the sporulation killing factor of Bacillus subtilis
-
Allenby NEE, Watts CA, Homuth G, Prágai Z, Wipat A, et al. (2006) Phosphate starvation induces the sporulation killing factor of Bacillus subtilis. J Bacteriol 188: 5299-5303.
-
(2006)
J Bacteriol
, vol.188
, pp. 5299-5303
-
-
Allenby, N.E.E.1
Watts, C.A.2
Homuth, G.3
Prágai, Z.4
Wipat, A.5
-
35
-
-
35648984014
-
Abh and AbrB control of Bacillus subtilis antimicrobial gene expression
-
Strauch MA, Bobay BG, Cavanagh J, Yao F, Wilson A, et al. (2007) Abh and AbrB control of Bacillus subtilis antimicrobial gene expression. J Bacteriol 189: 7720-7732.
-
(2007)
J Bacteriol
, vol.189
, pp. 7720-7732
-
-
Strauch, M.A.1
Bobay, B.G.2
Cavanagh, J.3
Yao, F.4
Wilson, A.5
-
36
-
-
55749092477
-
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis
-
Banse AV, Chastanet A, Rahn-Lee L, Hobbs EC, Losick R, (2008) Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis. Proc Natl Acad Sci U S A 105: 15547-15552.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 15547-15552
-
-
Banse, A.V.1
Chastanet, A.2
Rahn-Lee, L.3
Hobbs, E.C.4
Losick, R.5
-
37
-
-
79551477738
-
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation
-
Chumsakul O, Takahashi H, Oshima T, Hishimoto T, Kanaya S, et al. (2011) Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res 39: 414-428.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 414-428
-
-
Chumsakul, O.1
Takahashi, H.2
Oshima, T.3
Hishimoto, T.4
Kanaya, S.5
-
38
-
-
33845765190
-
Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes
-
Lulko AT, Buist G, Kok J, Kuipers OP, (2007) Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes. J Mol Microbiol Biotechnol 12: 82-95.
-
(2007)
J Mol Microbiol Biotechnol
, vol.12
, pp. 82-95
-
-
Lulko, A.T.1
Buist, G.2
Kok, J.3
Kuipers, O.P.4
-
39
-
-
2642533798
-
MicroPreP: a cDNA microarray data pre-processing framework
-
van Hijum SAFT, García de la Nava J, Trelles O, Kok J, Kuipers OP, (2003) MicroPreP: a cDNA microarray data pre-processing framework. Appl Bioinformatics 2: 241-244.
-
(2003)
Appl Bioinformatics
, vol.2
, pp. 241-244
-
-
van Hijum, S.A.F.T.1
de la Nava, J.G.2
Trelles, O.3
Kok, J.4
Kuipers, O.P.5
-
40
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M, (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32: D277-280.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 277-280
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
41
-
-
13444282474
-
InterPro, progress and status in 2005
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2005) InterPro, progress and status in 2005. Nucleic Acids Res 33: D201-205.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 201-205
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
-
42
-
-
77955237447
-
-
The Universal Protein Resource (UniProt) in 2010
-
The Universal Protein Resource (UniProt) in 2010 (2010) Nucleic Acids Res 38: D142-148.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 142-148
-
-
|