SWIFT MODELLER: A JAVA based GUI for molecular modeling

Journal of Molecular Modeling

Volumn 17, Issue 10, 2011, Pages 2601-2607

  Mathur, Abhinav ^a   Shankaracharya, ^a   Vidyarthi, Ambarish S ^a  

^a BIRLA INSTITUTE OF TECHNOLOGY   (India)

Author keywords

Loop modeling; MODELLER; Molecular modeling; SWIFT MODELLER

Indexed keywords

ARTICLE; AUTOMATION, COMPUTERS AND DATA PROCESSING; COMPUTER INTERFACE; COMPUTER PROGRAM; DATA EXTRACTION; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN DATA BANK; SEQUENCE ANALYSIS; SWIFT MODELLER; TIME MANAGEMENT;

COMPUTER GRAPHICS; MODELS, MOLECULAR; PROGRAMMING LANGUAGES; USER-COMPUTER INTERFACE;

EID: 80255138836     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-011-0960-4     Document Type: Article

References (8)

1. A Šali TL Blundell 1993 Comparative protein modelling by satisfaction of spatial restraints J Mol Biol 234 779 815 10.1006/jmbi.1993.1626 (Pubitemid 24007801)
2. A Fiser RK Do A Šali 2000 Modeling of loops in protein structures Protein Sci 9 1753 1773 10.1110/ps.9.9.1753 1:CAS:528:DC%2BD3cXntFamsL8%3D
3. Eswar N, Madhusudhan MS, Marti-Renom MA, Šali A (2005) BUILD-PROFILE: A module for calculating sequence profiles in MODELLER
4. MA Marti-Renom MS Madhusudhan A Šali 2004 Alignment of protein sequences by their profiles Protein Sci 13 1071 1087 10.1110/ps.03379804 1:CAS:528:DC%2BD2cXivFaktbs%3D (Pubitemid 38429228)
5. Eswar N, Madhusudhan MS, Marti-Renom MA, Šali A (2005) PROFILE-SCAN: A module for fold-assignment using profile-profile scanning in MODELLER
6. MS Madhusudhan MA Marti-Renom R Sanchez A Šali 2006 Variable gap penalty for protein sequence-structure alignment Protein Eng Des Sel 19 129 133 10.1093/protein/gzj005 1:CAS:528:DC%2BD28XhvVeltrc%3D
7. BK Kuntal P Aparoy P Reddanna 2010 EasyModeller: A graphical interface to MODELLER BMC Res Notes 3 226 330 10.1186/1756-0500-3-226
8. A Herráez 2006 Biomolecules in the computer: Jmol to the rescue Biochem Mol Biol Edu 34 255 261 10.1002/bmb.2006.494034042644