Conflicting mitochondrial and nuclear phylogeographic signals and evolution of host-plant shifts in the boreo-montane leaf beetle Chrysomela lapponica

Molecular Phylogenetics and Evolution

Volumn 61, Issue 3, 2011, Pages 686-696

  Mardulyn, Patrick ^a   Othmezouri, Nicolas ^a   Mikhailov, Yuri E ^b   Pasteels, Jacques M ^a  

^a UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

^b URAL STATE FOREST ENGINEERING UNIVERSITY   (Russian Federation)

Author keywords

Chrysomelidae; Coalescent simulations; Host plant shift; Introgression; Natural selection; Phylogeography

Indexed keywords

ALLELE; ANIMAL; ARTICLE; BEETLE; BIOLOGICAL MODEL; BIRCH; CELL NUCLEUS; ECOSYSTEM; EUROPE; GENE; GENE LOCUS; GENETIC VARIABILITY; GENETICS; HOST PARASITE INTERACTION; MITOCHONDRION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PHYLOGENY; PHYLOGEOGRAPHY; PLANT; PLANT LEAF; STATISTICAL MODEL; WILLOW;

ALLELES; ANIMALS; BEETLES; BETULA; CELL NUCLEUS; ECOSYSTEM; EUROPE; EVOLUTION, MOLECULAR; GENES, INSECT; GENETIC LOCI; GENETIC VARIATION; HOST-PARASITE INTERACTIONS; LIKELIHOOD FUNCTIONS; MITOCHONDRIA; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PHYLOGEOGRAPHY; PLANT LEAVES; PLANTS; SALIX;

CHRYSOMELA LAPPONICA; CHRYSOMELIDAE; COLEOPTERA; SALIX;

EID: 80055108297     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.09.001     Document Type: Article

References (61)

1. Avise J.C. Phylogeography. The History and Formation of Species 2000, Harvard University Press, Cambridge, MA.
2. Ballard J.W.O. When one is not enough: introgression of mitochondrial DNA in Drosophila. Mol. Biol. Evol. 2000, 17:1126-1130.
3. Ballard J.W.O., Whitlock M.C. The incomplete natural history of mitochondria. Mol. Ecol. 2004, 13:729-744.
4. Bandelt H.J., Forster P., Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48.
5. Bazin E., Glemin S., Galtier N. Population size does not influence mitochondrial genetic diversity in animals. Science 2006, 312:570-572.
6. Bensasson D., Zhang D.-X., Hartl D.L., Hewitt G.M. Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends Ecol. Evol. 2001, 16:314-321.
7. Brown W.J. The new world species of Chrysomela L. (Coleoptera, Chrysomelidae). Can. Ent. 1956, 88:5-54.
8. Bukejs A. On Latvian Chrysomelinae (Coleoptera: Chrysomelidae): 2. Genus Chrysomela Linnaeus, 1758. Acta Zool. Lituanica 1758, 20:12-21.
9. Chen W., Bi K., Fu J. Frequent mitochondrial gene introgression among high elevation Tibetan megophryid frogs revealed by conflicting gene genealogies. Mol. Ecol. 2009, 18:2856-2876.
10. Collura R.V., Stewart C.-B. Insertions and duplications of mt DNA in the nuclear genomes of Old World monkeys and hominoids. Nature 1995, 378:485-489.
11. Edwards S.V., Beerli P. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 2000, 54:1839-1854.
12. Edwards S., Bensch S. Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008. Mol. Ecol. 2009, 18:2930-2933.
13. Egea R., Casillas S., Barbadilla A. Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. Nucl. Acid Res. 2008, 36:W157-W162.
14. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
15. Excoffier L., Laval G., Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolut. Bioinf. Online 2005, 1:47-50.
16. Fatouros N.E., Hilker M., Gross J. Reproductive isolation between populations from Northern and Central Europe of the leaf beetle Chrysomela lapponica L. Chemoecology 2006, 16:241-251.
17. Ferguson W., Dvora S., Gallo J., Orth A., Boissinot S. Long-term balancing selection at the west Nile virus resistance gene, Oas1b, maintains transspecific polymorphisms in the house mouse. Mol. Biol. Evol. 2008, 25:1609-1618.
18. Gomez-Zurita J., Vogler A.P. Incongruent nuclear and mitochondrial phylogeographic patterns in the Timarcha goettingensis species complex (Coleoptera, Chrysomelidae). J. Evol. Biol. 2003, 16:833-843.
19. Gomez-Zurita J., Vogler A.P. Testing introgressive hybridization hypotheses using statistical network analysis of nuclear and cytoplasmic haplotypes in the leaf beetle Timarcha goettingensis species complex. J. Mol. Evol. 2006, 62:421-433.
20. Gomez-Zurita J., Kopliku F., Theodorides K., Vogler A.P. Resources for a phylogenomic approach in leaf beetle (Coleoptera) systematics. New Developments in the Biology of Chrysomelidae 2004, 19-35. SPB Academic Publishing, The Hague, The Netherlands. P. Jolivet, J.A. Santiago-Blay, M. Schmitt (Eds.).
21. Gross J., Fatouros N.E., Hilker M. The significance of bottom-up effects for host plant specialization in Chrysomela leaf beetles. Oikos 2004, 105:368-376.
22. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
23. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
24. Hare M.P. Prospects for nuclear gene phylogeography. Trends Ecol. Evol. 2001, 16:700-706.
25. Hedrick P.W., Thomson G. Evidence for balancing selection at HLA. Genetics 1983, 104:449-456.
26. Hein J., Schierup M., Wiuf C. Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory 2005, Oxford University Press, Oxford, UK.
27. Hewitt G. The genetic legacy of the Quaternary ice ages. Nature 2000, 405:907-913.
28. Hewitt G.M. Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Mol. Ecol. 2001, 10:537-549.
29. Hey J., Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 2004, 167:747-760.
30. Hilker M., Schulz S. Composition of larval secretion of Chrysomela lapponica (Coleoptera, Chrysomelidae) and its dependence on host plant. J. Chem. Ecol. 1994, 20:1075-1093.
31. Hudson R.R. Gene genealogies and the coalescent process. Oxford Surveys in Evolutionary Biology 7 1990, 1-44. Oxford University Press, Oxford. D.G. Futuyma, J. Antonovics (Eds.).
32. Kirsch R., Vogel H., Muck A., Reichwald K., Pasteels J.M., Boland W. Host plant shifts affect a major defense enzyme in Chrysomela lapponica. Proc. Natl. Acad. Sci. USA 2011, 108:4897-4901.
33. Knoll S., Rowell-Rahier M., Mardulyn P., Pasteels J.M. Spatial genetic structure of leaf beetle species with special emphasis on Alpine populations. Chrysomelidae Biology, The Classification, Phylogeny and Genetics, vol. 1 1996, 379-388. Academic Publishing, Amsterdam, The Netherlands. P.H.A. Jolivet, M.L. Cox (Eds.).
34. Knowles L.L., Carstens B.C. Estimating a geographically explicit model of population divergence. Evolution 2007, 61:477-493.
35. Kotlík P., Deffontaine V., Mascheretti S., Zima J., Michaux J.R., Searle J.B. A northern glacial refugium for bank voles (Clethrionomys glareolus). Proc. Natl. Acad. Sci. USA 2006, 103:14860-14864.
36. Laval G., Excoffier L. SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics 2004, 20:2485-2487.
37. Li J.W., Yeung C.K., Tsai P.W., Lin R.C., Yeh C.F., Yao C.T., Han L., Hungle M., Ding P., Wang Q., Li S.H. Rejecting strictly allopatric speciation on a continental island: prolonged postdivergence gene flow between Taiwan (Leucodioptron taewanus, Passeriformes Timaliidae) and Chinese (L. Canorum canorum) hwameis. Mol. Ecol. 2010, 19:494-507.
38. Machkour-M'Rabet S., Mardulyn P., Pasteels J.M. Genetic differentiation among European samples of the arctic-alpine leaf beetle, Chrysomela lapponica. Entomol. Exp. Appl. 2008, 129:181-188.
39. Maddison D.R., Maddison W.P. MacClade 4: Analysis of Phylogeny Character Evolution. Version 4.08 2005, Sinauer Associates, Sunderland, Massachusetts.
40. Mardulyn P., Milinkovitch M.C., Pasteels J.M. Phylogenetic analyses of DNA and allozyme data suggest that Gonioctena leaf beetles (Coleoptera; Chrysomelidae) experienced convergent evolution in their history of host-plant family shifts. Syst. Biol. 1997, 46:722-747.
41. Mardulyn P., Mikhailov Y.E., Pasteels J.M. Testing phylogeographic hypotheses in a Euro-Siberian cold-adapted leaf beetle with coalescent simulations. Evolution 2009, 63:2717-2729.
42. Nei M. Molecular Evolutionary Genetics 1987, Columbia University Press, New York, USA.
43. Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 1979, 76:5269-5273.
44. Nevado B., Koblmüller S., Sturmbauer C., Snoeks J., Usano-Alemany J., Verheyen J. Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish. Mol. Ecol. 2009, 18:4240-4255.
45. Peters J.L., Zhuravlev Y.N., Fefelov I., Humphries E.M., Omland K.E. Multilocus phylogeography of a Holarctic duck: colonization of North America from Eurasia by gadwall (Anas strepera). Evolution 2008, 62:1469-1483.
46. Petit J.R., Jouzel J., Raynaud D., Barkov N.I., Barnola J.-M., Basile I., Bender M., Chapellaz J., Davis M., Delaygue G., Delmotte M., Kotlyakov V.M., Legrand M., Lipenkov V.Y., Lorius C., Pépin L., Ritz C., Saltzman E., Stievenard M. Climate and atmospheric history of the past 420,000years from the Vostok ice core, Antarctica. Nature 1999, 399:429-436.
47. Polihronakis M. The interface between phylogenetics and population genetics: investigating gene trees, species trees, and population dynamics in the Phyllophaga fraternal species group. Evolution 2010, 64:1048-1062.
48. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
49. Rambaut, A., 2002. Se-Al: sequence alignment editor. http://evolve.zoo.ox.ac.uk/.
50. Schulz S., Gross J., Hilker M. Origin of the defensive secretion of the leaf beetle Chrysomela lapponica. Tetrahedron 1997, 53:9203-9212.
51. Shimodaira H., Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 1999, 16:1114-1116.
52. Simon C., Frati F., Beckenbach A., Crespi B., Liu H., Flooks P. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 1994, 87:651-701.
53. Sota T. Radiation and reticulation: extensive introgressive hybridization in the carabid beetles Ohomopterus inferred from mitochondrial gene genealogy. Popul. Ecol. 2002, 44:145-156.
54. Swoford D.L. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 2003, Sinauer Associates, Sunderland, Massachusetts.
55. Taberlet P., Fumagalli L., Wust-Saucy A.G., Cosson J.F. Comparative phylogeography and postglacial colonization routes in Europe. Mol. Ecol. 1998, 7:453-464.
56. Termonia A., Hsiao T.H., Pasteels J.M., Milinkovitch M.C. Feeding specialization and host-derived chemical defense in Chrysomeline leaf beetles did not lead to an evolutionary dead end. Proc. Natl. Acad. Sci. USA 2001, 98:3909-3914.
57. Villablanca F.X., Roderick G.K., Palumbi S.R. Invasion genetics of the Mediterranean fruit fly: variation in multiple nuclear introns. Mol. Ecol. 1998, 7:547-560.
58. Wakeley J. Coalescent Theory: An Introduction 2009, Roberts & Co. Publishers, Greenwood Village, Colo.
59. Warchalowski A. Chrysomelidae, The Leaf-Beetles of Europe and The Mediterranean Area 2003, Natura optima dux Foundation, Warsaw, Poland.
60. Zhang D.-X., Hewitt G.M. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol. Ecol. 2003, 12:563-584.
61. Zhang A.B., Sota T. Nuclear gene sequences resolve species phylogeny and mitochondrial introgression in Leptocarabus beetles showing trans-species polymorphisms. Mol. Phylogen. Evol. 2007, 45:534-546.