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Volumn 47, Issue 3, 2011, Pages 275-280

Bacterial community profiling during the manufacturing process of traditional soybean paste by pyrosequencing method

Author keywords

Bacillus; Bacteria; Microbial community; Pyrosequencing; Soybean paste

Indexed keywords

ACTINOBACTERIA; BACILLUS (BACTERIUM); BACILLUS AMYLOLIQUEFACIENS; BACILLUS ATROPHAEUS; BACILLUS MOJAVENSIS; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); BACTEROIDETES; CLOSTRIDIUM; ENTEROCOCCUS; FIRMICUTES; GLYCINE MAX; PROTEOBACTERIA;

EID: 80055102482     PISSN: 04402413     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (26)

References (32)
  • 1
    • 34547489174 scopus 로고    scopus 로고
    • Isolation, identification, and fermentation characteristics of Bacillus sp. with high protease activity from traditional cheonggukjang
    • Ahn, Y.S., Y.S. Kim, and D.H. Shin. 2006. Isolation, identification, and fermentation characteristics of Bacillus sp. with high protease activity from traditional cheonggukjang. Korean J. Food Sci. Technol. 38, 82-87.
    • (2006) Korean J. Food Sci. Technol. , vol.38 , pp. 82-87
    • Ahn, Y.S.1    Kim, Y.S.2    Shin, D.H.3
  • 2
    • 0346848895 scopus 로고    scopus 로고
    • Purification and characterization of proteases from Bacillus amyloliquefaciens isolated from traditional soybean fermentation starter
    • Cho, S.J., S.H. Oh, R.D. Pridmore, M.A. Juillerat, and C.H. Lee. 2003. Purification and characterization of proteases from Bacillus amyloliquefaciens isolated from traditional soybean fermentation starter. J. Agric. Food. Chem. 51, 7664-7670.
    • (2003) J. Agric. Food. Chem. , vol.51 , pp. 7664-7670
    • Cho, S.J.1    Oh, S.H.2    Pridmore, R.D.3    Juillerat, M.A.4    Lee, C.H.5
  • 3
    • 38049011049 scopus 로고    scopus 로고
    • Isolation, identification and growth characteristics of main strain related to meju fermentation
    • Choi, K.K., C.B. Cui, S.S. Han, and D.S. Lee. 2003. Isolation, identification and growth characteristics of main strain related to meju fermentation. J. Kor. Soc. Food. Sci. Nutr. 32. 818-824.
    • (2003) J. Kor. Soc. Food. Sci. Nutr. , vol.32 , pp. 818-824
    • Choi, K.K.1    Cui, C.B.2    Han, S.S.3    Lee, D.S.4
  • 4
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
    • Chun. J., J.H. Lee, Y. Jung, M. Kim, S. Kim, B.K. Kim, and Y.W. Lim. 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. sys. Evol. Microbiol. 57, 2259-2261.
    • (2007) Int. J. sys. Evol. Microbiol. , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.H.2    Jung, Y.3    Kim, M.4    Kim, S.5    Kim, B.K.6    Lim, Y.W.7
  • 5
    • 69449097013 scopus 로고    scopus 로고
    • Production of the novel two-peptide lantibiotic lichenicidin by Bacillus licheniformis DSM 13
    • Dischinger, J., M. Josten, C. Szekat, H.Sahl, and G. Bierbaum. 2009. Production of the novel two-peptide lantibiotic lichenicidin by Bacillus licheniformis DSM 13. PLos One 4, 1-11.
    • (2009) PLos One , vol.4 , pp. 1-11
    • Dischinger, J.1    Josten, M.2    Szekat, C.3    Sahl, H.4    Bierbaum, G.5
  • 6
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I.J. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40, 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 8
    • 80052287608 scopus 로고    scopus 로고
    • Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing
    • Jeong, J.Y., H.D. Park, K.H. Lee, H.W. Weon, and J.O. Ka. Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing. J. Microbiol. 49, 585-594.
    • J. Microbiol. , vol.49 , pp. 585-594
    • Jeong, J.Y.1    Park, H.D.2    Lee, K.H.3    Weon, H.W.4    Ka, J.O.5
  • 9
    • 78549257738 scopus 로고    scopus 로고
    • Characterization and purification of the bacteriocin produced by Bacillus licheniformis isolated from soybean sauce
    • Jung, S.S., J.I. Choi, W.H. Joo, H.H. Suh, A.S. Na, Y.K. Cho, J.Y. Moon, K.C. Ha, D.H. Paik, and D.O. Kang. 2009. Characterization and purification of the bacteriocin produced by Bacillus licheniformis isolated from soybean sauce. J. Life Sci. 19, 994-1002.
    • (2009) J. Life Sci. , vol.19 , pp. 994-1002
    • Jung, S.S.1    Choi, J.I.2    Joo, W.H.3    Suh, H.H.4    Na, A.S.5    Cho, Y.K.6    Moon, J.Y.7    Ha, K.C.8    Paik, D.H.9    Kang, D.O.10
  • 10
    • 56149109448 scopus 로고    scopus 로고
    • Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing
    • Kim, B.S., B.K. Kim, J.H. Lee, M. Kim, Y.M. Lim, and J. Chun. 2008. Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing. J. Microbiol. 46, 357-363.
    • (2008) J. Microbiol. , vol.46 , pp. 357-363
    • Kim, B.S.1    Kim, B.K.2    Lee, J.H.3    Kim, M.4    Lim, Y.M.5    Chun, J.6
  • 11
    • 79959781924 scopus 로고    scopus 로고
    • Analysis of bacterial communities in Meju, a Korean traditional fermented soybean bricks, by cultivation-based and pyrosequencing methods
    • Kim, Y.S., M.C. Kim, S.W Kwon, S.J Kim, I.C. Park, J.O. Ka, and H.Y. Weon. 2011. Analysis of bacterial communities in Meju, a Korean traditional fermented soybean bricks, by cultivation-based and pyrosequencing methods. J. Microbiol. 49, 340-348.
    • (2011) J. Microbiol. , vol.49 , pp. 340-348
    • Kim, Y.S.1    Kim, M.C.2    Kwon, S.W.3    Kim, S.J.4    Park, I.C.5    Ka, J.O.6    Weon, H.Y.7
  • 12
    • 78549266825 scopus 로고    scopus 로고
    • Isolation of Bacillus licheniformis producing antimicrobial agents against Bacillus cereus and its properties
    • Kim, Y.S., S.H. Yun, D.Y. Jeong, K.S. Hahn, and T.B. Uhm. 2010. Isolation of Bacillus licheniformis producing antimicrobial agents against Bacillus cereus and its properties. Kor. J. Microbiol. 46, 270-277.
    • (2010) Kor. J. Microbiol. , vol.46 , pp. 270-277
    • Kim, Y.S.1    Yun, S.H.2    Jeong, D.Y.3    Hahn, K.S.4    Uhm, T.B.5
  • 13
    • 77953089407 scopus 로고    scopus 로고
    • Analysis of bacterial and fungal communities in Japanese and Chinese soybean pastes using nested PCR-DGGE
    • Kim, T.W., J.H. Lee, M.H. Park, and H.Y. Kim, 2010. Analysis of bacterial and fungal communities in Japanese and Chinese soybean pastes using nested PCR-DGGE. Curr. Microbiol. 60, 315-320.
    • (2010) Curr. Microbiol. , vol.60 , pp. 315-320
    • Kim, T.W.1    Lee, J.H.2    Park, M.H.3    Kim, H.Y.4
  • 14
    • 64349106106 scopus 로고    scopus 로고
    • Analysis of microbial communities in doenjang, a Korean fermented soybean paste, using nested PCR-denaturing gradient gel electrophoresis
    • Kim, T.W., J.H. Lee, S.E. Kim, M.H. Park, H.C. Chang, and H.Y. Kim. 2009. Analysis of microbial communities in doenjang, a Korean fermented soybean paste, using nested PCR-denaturing gradient gel electrophoresis. Int. J. Food Microbiol. 131, 265-271.
    • (2009) Int. J. Food Microbiol. , vol.131 , pp. 265-271
    • Kim, T.W.1    Lee, J.H.2    Kim, S.E.3    Park, M.H.4    Chang, H.C.5    Kim, H.Y.6
  • 15
    • 35948941266 scopus 로고    scopus 로고
    • DegU and YczE positively regulate the synthesis of Bacillomycin D by Bacillus amyloliquefaciens strain FZB42
    • Koumoutsi, A., X-H. Chen, J. Vater, and R. Borriss. 2007. DegU and YczE positively regulate the synthesis of Bacillomycin D by Bacillus amyloliquefaciens strain FZB42. Appl. Environ. Microbiol. 73, 6953-6964.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 6953-6964
    • Koumoutsi, A.1    Chen, X.-H.2    Vater, J.3    Borriss, R.4
  • 16
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (eds.), John Wiley and Sons, Chister, England
    • Lane, D.J. 1991. 16S/23S rRNA sequencing, p. 115-148. In E. Stackebrandt and M. Goodfellow (eds.), Nucleic acid techniques in bacterial systematic, John Wiley and Sons, Chister, England.
    • (1991) Nucleic acid techniques in bacterial systematic , pp. 115-148
    • Lane, D.J.1
  • 17
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. and A. Godzik. 2006. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 18
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picoliter reactors
    • Margulies, M., M. Egholm, W.E. Altman, S. Attiya, J.S. Bade, L.A. Bemben et al. 2005. Genome sequencing in microfabricated high-density picoliter reactors. Nature 437, 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bade, J.S.5    Bemben, L.A.6
  • 19
    • 36549018176 scopus 로고    scopus 로고
    • The plant pathogen Pantoea ananatis produces N-acylhomoserine lactone and causes center rot disease of onion by quorum sensing
    • Morohoshi, T., Y. Nakamura, G. Yamazaki, A. Ishida, N.Kato, and T. Ikeda. 2007. The plant pathogen Pantoea ananatis produces N-acylhomoserine lactone and causes center rot disease of onion by quorum sensing. J. Bacteriol. 189, 8333-8338.
    • (2007) J. Bacteriol. , vol.189 , pp. 8333-8338
    • Morohoshi, T.1    Nakamura, Y.2    Yamazaki, G.3    Ishida, A.4    Kato, N.5    Ikeda, T.6
  • 21
    • 36148937913 scopus 로고    scopus 로고
    • A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
    • Parameswaran, P., R. Jalili, L. Tao, S. Shokralla, B. Gharizadeh, M. Ronaghi et al. 2007. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res. 35, e130.
    • (2007) Nucleic Acids Res , vol.35
    • Parameswaran, P.1    Jalili, R.2    Tao, L.3    Shokralla, S.4    Gharizadeh, B.5    Ronaghi, M.6
  • 22
    • 61349158146 scopus 로고    scopus 로고
    • Characteristics of taste components of commercial kochujang
    • Park, H.K., B. Gil., and J.K. Kim. 2003. Characteristics of taste components of commercial kochujang. Korean J. Food Sci. Technol. 12, 119-121.
    • (2003) Korean J. Food Sci. Technol. , vol.12 , pp. 119-121
    • Park, H.K.1    Gil, B.2    Kim, J.K.3
  • 23
    • 73449146256 scopus 로고    scopus 로고
    • Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
    • Roh, S.W., K.H. Kim, Y.D. Nam, H.W. Chang, E.J. Park, and J.W. Bae. 2010. Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J. 4, 1-16.
    • (2010) ISME J. , vol.4 , pp. 1-16
    • Roh, S.W.1    Kim, K.H.2    Nam, Y.D.3    Chang, H.W.4    Park, E.J.5    Bae, J.W.6
  • 24
    • 79960419828 scopus 로고    scopus 로고
    • Pantoea stewartii subsp. stewartii: lessons learned from a xylem-dwelling pathogen of sweet corn
    • Roper, M.C. 2011. Pantoea stewartii subsp. stewartii: lessons learned from a xylem-dwelling pathogen of sweet corn. Mol. Plant Pathol. 12, 628-637.
    • (2011) Mol. Plant Pathol. , vol.12 , pp. 628-637
    • Roper, M.C.1
  • 26
    • 78549259311 scopus 로고    scopus 로고
    • Characterization of antibacterial substance-producing Bacillus subtilis isolated from traditional Doenjang
    • Ryu, H.S., M.Y. Shon, S.J. Cho, S.K. Park, and S.W. Lee. 2007. Characterization of antibacterial substance-producing Bacillus subtilis isolated from traditional Doenjang. J. Korean Soc. Appl. Biol. Chem. 50, 87-94.
    • (2007) J. Korean Soc. Appl. Biol. Chem. , vol.50 , pp. 87-94
    • Ryu, H.S.1    Shon, M.Y.2    Cho, S.J.3    Park, S.K.4    Lee, S.W.5
  • 29
    • 80055115833 scopus 로고    scopus 로고
    • Economy Secondary planning report for rural-based industry promotion project. Republic of Korea
    • Secondary planning report for rural-based industry promotion project. 2008. Ministry of Knowledge Economy. Republic of Korea.
    • (2008) Ministry of Knowledge
  • 30
    • 40849136238 scopus 로고    scopus 로고
    • Isolation of the Bacillus subtilis antimicrobial peptide subtilosin from the dairy product-derived Bacillus amyloliquefaciens
    • Sutyak, K.E., R.E. Wirawan, A.A. Aroutcheva, and M.L. Chikindas. 2008. Isolation of the Bacillus subtilis antimicrobial peptide subtilosin from the dairy product-derived Bacillus amyloliquefaciens. J. Appl Microbiol. 104, 1067-1074.
    • (2008) J. Appl Microbiol. , vol.104 , pp. 1067-1074
    • Sutyak, K.E.1    Wirawan, R.E.2    Aroutcheva, A.A.3    Chikindas, M.L.4
  • 31
    • 0029016528 scopus 로고
    • Characterization of a new lipopeptide surfactant produced by thermotolerant and halotolerant subsurface Bacillus licheniformis BAS50
    • Yakimov, M.M., K.N. Timmis, V. Wray, and H.H. Fredrickson. 1995. Characterization of a new lipopeptide surfactant produced by thermotolerant and halotolerant subsurface Bacillus licheniformis BAS50. Appl. Environ. Microbiol. 61, 1706-1713.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1706-1713
    • Yakimov, M.M.1    Timmis, K.N.2    Wray, V.3    Fredrickson, H.H.4
  • 32
    • 79959451914 scopus 로고    scopus 로고
    • Physico-chemical and microbiological changes of traditional meju during fermentation in Kangweondo area
    • Yoo, J.Y., H.G. Kim, and W.J. Kim. 1998. Physico-chemical and microbiological changes of traditional meju during fermentation in Kangweondo area. Korean J. Food Sci. Technol. 30, 908-915.
    • (1998) Korean J. Food Sci. Technol. , vol.30 , pp. 908-915
    • Yoo, J.Y.1    Kim, H.G.2    Kim, W.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.