Genetic linkage map of a high yielding FELDA Deli×Yangambi oil palm cross

PLoS ONE

Volumn 6, Issue 11, 2011, Pages

  Seng, Tzer Ying ^a,c   Saad, Siti Hawa ^a   Chin, Cheuk Weng ^a   Ting, Ngoot Chin ^b   Singh, Rajinder Singh Harminder ^b   Zaman, Faridah ^c   Tan, Soon Guan ^c   Alwee, Sharifah Shahrul Rabiah ^a  

^a Federal Land Development Authority Malaysia Agricultural Services Sdn Bhd   (Malaysia)

^b MALAYSIAN PALM OIL BOARD   (Malaysia)

^c UNIVERSITY PUTRA MALAYSIA   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CONTROLLED STUDY; CROSS HYBRIDIZATION; DNA POLYMORPHISM; ELAEIS GUINEENSIS; GENE LOCUS; GENETIC ALGORITHM; GENETIC LINKAGE; GENETIC MARKER; GENOTYPE; NONHUMAN; PHENOTYPE; PROGENY; QUANTITATIVE TRAIT LOCUS;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; ARECACEAE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROSSES, GENETIC; DNA PRIMERS; GENETIC LINKAGE; GENETIC MARKERS; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; QUANTITATIVE TRAIT LOCI;

ELAEIS; ELAEIS GUINEENSIS;

EID: 80055101389     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026593     Document Type: Article

References (38)

1. Mayes S, Jack PL, Marshall DF, Corley RHV, (1997) The construction of an RFLP genetic linkage map for oil palm (Elaeis guineensis Jacq.). Genome 40: 116-122.
2. Moretzsohn MC, Nunes CDM, Ferreira ME, Grattapaglia D, (2000) RAPD linkage mapping of the shell thickness locus in oil palm (Elaeis guineensis Jacq.). Theor Appl Genet 100: 63-70.
3. Rance KA, Mayes S, Price Z, Jack PL, Corley RH, (2001) Quantitative trait loci for yield components in oil palm (Elaeis guineensis Jacq.). Theor Appl Genet 103: 1302-1310.
4. Rhode W, (2003) Scientific Report 2003. Available: http://www.mpiz-koeln.mpg.de/~rohde/. Accessed 2011 Mar 10.
5. Billotte N, Marseillac N, Risterucci AM, Adon B, Brottier P, et al. (2005) Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.). Theor Appl Genet 110: 754-765.
6. Hayati A, Wickneswari R, Maizura I, Rajanaidu N, (2004) Genetic diversity of oil palm (Elaeis guineensis Jacq.) germplasm collections from Africa: implications for improvement and conservation of genetic resources. Theor Appl Genet 108: 1274-1284.
7. Ithnin M, Rajanaidu N, Zakri AH, Cheah SC, (2006) Assessment of Genetic Diversity in Oil Palm (Elaeis guineensis Jacq.) using Restriction Fragment Length Polymorphism (RFLP). Genet Res Crop Evol 53 (1): 187-195.
8. Singh R, Noorhariza MZ, Ting NC, Rozana R, Tan SG, et al. (2008) Exploiting an oil palm EST database for the development of gene-derived SSR markers and their exploitation for assessment of genetic diversity. Biologia 63 (2): 227-235.
9. Ting NC, Noorhariza MZ, Rozana R, Low ET, Ithnin M, et al. (2010) SSR mining in oil palm EST database: application in oil palm germplasm diversity studies. J Genet 89 (2): 135-145.
10. Chua BH, Elyana MS, Boon SH, Wizana ZA, Leslie LET, et al. (2004) Preliminary analysis of microsatellites derived from oil palm tissue culture ESTs. Malaysian Society for Molecular Biology and Biotechnology (MSMBB) 2004. Scientific Meeting, Melaka, Malaysia 2004, 127.
11. Singh R, (2005) Molecular markers and their applications in the construction of genetic linkage maps and analysis of monogenic and quantitative traits in oil palm. Thesis.
12. Singh R, Rahimah AR, Cheah SC, (2006) Markers to predict skin colour of oil palm fruits. MPOB Technology Transfer No. 306.
13. Singh R, Tan SG, Panandam JM, Sharma M, Cheach SC, (2007) Preliminary analysis of quantitative traits loci associated with oil quality in an interspecific cross of oil palm. Pertanika J Trop Agric Sci 30: 31-44.
14. Singh R, Ooi LCL, Rahimah AR, (2008) PCR-based marker for distinguishing Skin colour of oil palm fruits. MPOB Technology Transfer No. 399.
15. Singh R, Tan SG, Panandam JM, Rahimah AR, Ooi LCL, et al. (2009) Mapping quantitative trait loci (QTLs) for fatty acid composition in an interspecific cross of oil palm. BMC Plant Biology 9 (1): 114.
16. Low ET, Halimah A, Boon SH, Shariff EM, Tan CYA, et al. (2008) Oil palm Elaeis guineensis Jacq. tissue culture ESTs identifying genes associated with callogenesis and embryogenesis. BMC Plant Biology 8: 62.
17. Ting NC, Cheah SC, Zamzuri I, Tan SG, Faridah QZ, et al. (2006) Statistical mapping of quantitative trait loci controlling the time to first callusing in oil palm (Elaeis guineensis Jacq.) tissue culture. Pertanika J Trop Agric Sci 29 (1 & 2): 35-45.
18. Ajmone-Marsan P, Monfredini G, Ludwing WF, Melchinger AE, Franceschini P, et al. (1995) In an elite cross of maize a major quantitative trait locus controls one-fourth of the genetic variation for grain yield. Theor Appl Genet 90: 415-424.
19. Ajmone-Marsan P, Castiglioni P, Fusari F, Kuiper M, Motto M, (1998) Genetic diversity and its relationship to hybrid performance in maize as revealed by RFLP and AFLP markers. Theor Appl Genet 98: 219-227.
20. Castiglioni P, Ajmone-Marsan P, van Wijk R, Motto M, (1999) AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theor Appl Genet 99: 425-431.
21. Seng TY, Faridah QZ, (2006) DNA extraction from mature oil palm leaves. Journal of Oil Palm Research 18: 219-224.
22. Vos P, Hogers R, Bleeker M, Reijans M, Van de Lee T, et al. (1995) AFLP: a new technique for DNA fingerprinting. Nuc Acids Res 23: 4407-4414.
23. Roy R, Steffens DL, Gartside B, Jang GY, Brumbaugh JA, (1996) Producing STR locus patterns from bloodstains and other forensic samples using an infrared fluorescent automated DNA sequencer. J Forensic Sci 41: 418-424.
24. Steffens DL, Sutter SL, Roemer SC, (1993) An alternate universal forward primer for improved automated sequencing of M13. BioTechniques 15: 580-582.
25. Oetting WS, Lee HK, Flanders DJ, Wiesner GL, Sellers TA, et al. (1995) Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13 tailed primers. Genomics 30: 450-458.
26. Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF, (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. BioTechniques 31: 24-28.
27. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
28. Rozen S, Skaletsky H, (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
29. Ritter E, Gebhardt C, Salamini F, (1990) Estimation of recombination frequencies and construction of RFLP linkage maps in plants from crosses between heterozygous parents. Genetics 224: 645-654.
30. Lespinasse D, Rodier-Goud M, Grivet L, Leconte A, Legnate H, et al. (2000) A saturated genetic linkage map of rubber tree (Hevea spp.) based on RFLP, AFLP, microsatellite, and isozyme markers. Theor Appl Genet 100: 127-138.
31. Grattapaglia D, Sederoff R, (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-test cross mapping strategy and RAPD markers. Genetics 137: 1121-1137.
32. Ritter E, Ruiz de Galarreta JI, van Eck HJ, Sánchez I, (2008) Construction of a potato transcriptome map based on the cDNA-AFLP technique. Theor Appl Genet 116: 1003-1013.
33. Ritter E, Salamini F, (1996) The calculation of recombination frequencies in crosses of allogamous plant species with application to linkage mapping. Genet Res 67: 55-65.
34. van der Voort RJN, van Zandvoort P, van Eck HJ, Folkertsma RT, Hutten RCB, et al. (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol Gen Genet 255: 438-447.
35. Kosambi DD, (1944) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
36. Becker J, Vos P, Kuiper M, Salamini F, Heun M, (1995) Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249: 65-73.
37. Cho YG, McCouch SR, Kuiper M, Kang M-R, Pot J, et al. (1998) Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.). Theor Appl Genet 97: 370-380.
38. Lincoln SE, Lander ES, (1992) Systematic detection of errors in genetic linkage data. Genomics 14: 604-610.