The mitochondrial genome of Baylisascaris procyonis

PLoS ONE

Volumn 6, Issue 10, 2011, Pages

  Xie, Yue ^a   Zhang, Zhihe ^b   Niu, Lili ^c   Wang, Qiang ^c   Wang, Chengdong ^b   Lan, Jingchao ^b   Deng, Jiabo ^c   Fu, Yan ^a   Nie, Huaming ^a   Yan, Ning ^a   Yang, Deying ^a   Hao, Guiying ^a   Gu, Xiaobin ^a   Wang, Shuxian ^a   Peng, Xuerong ^a   Yang, Guangyou ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

^b CHENGDU RESEARCH BASE OF GIANT PANDA BREEDING   (China)

^c Chengdu Zoological Garden   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME RNA; SPACER DNA; TRANSFER RNA; MESSENGER RNA;

ARTICLE; AT RICH SEQUENCE; BAYLISASCARIS PROCYONIS; DNA BASE COMPOSITION; GC RICH SEQUENCE; GENE STRUCTURE; GENOME ANALYSIS; MITOCHONDRIAL GENE; MITOCHONDRIAL GENOME; MOLECULAR BEACON; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA GENE; RRNL GENE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; ANIMAL; ASCARIDOIDEA; DNA SEQUENCE; GENE; GENETICS; METHODOLOGY; MOLECULAR GENETICS;

ANIMALIA; ASCARIDIDA; ASCARIDOIDEA; BAYLISASCARIS PROCYONIS; CHROMADOREA; NEMATODA; PROCYON; SECERNENTEA;

ANIMALS; ASCARIDOIDEA; GENES, HELMINTH; GENES, RRNA; GENOME, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, MESSENGER; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA;

EID: 80055063374     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0027066     Document Type: Article

References (54)

1. Blizzard EL, Yabsley MJ, Beck MF, Harsch S, (2011) Geographic expansion of Baylisascaris procyonis roundworms, Florida, USA. Emerg Infect Dis 16: 1803-1804.
2. Dangoudoubiyam S, Vemulapalli R, Kazacos KR, (2009) PCR assays for detection of Baylisascaris procyonis eggs and larvae. J Parasitol 95: 571-577.
3. Kazacos KR, Boyce WM, (1989) Baylisascaris larva migrans. J Am Vet Med Assoc 195: 894-903.
4. Kazacos KR, (2000) Protecting children from helminthic zoonoses. Contemp Pediatr 17: 1-24.
5. Park SY, Glaser C, Murray WJ, Kazacos KR, Rowley HA, et al. (2000) Raccoon roundworm (Baylisascaris procyonis) encephalitis: case report and field investigation. Pediatrics 106: E56.
6. Gavin PJ, Shulman ST, Kazacos KR, Davis AT, Mets MB, et al. (2001) Neural larva migrans caused by the raccoon roundworm Baylisascaris procyonis: Two pediatric cases from Chicago, Illinois. American Society of Microbiology Conference Abstract No. C-443.
7. Boschetti A, Kasznica J, (1995) Visceral larva migrans induced eosinophilic cardiac pseudotumor: a cause of sudden death in a child. J Forensic Sci 40: 1097-1099.
8. Cunningham CK, Kazacos KR, McMillan JA, Lucas JA, McAuley JB, et al. (1994) Diagnosis and management of Baylisascaris procyonis infection in an infant with nonfatal meningoencephalitis. Clin Infect Dis 18: 868-872.
9. Huff DS, Neafie RC, Binder MJ, De Leon GA, Brown LW, et al. (1984) Case 4. The first fatal Baylisascaris infection in humans: an infant with eosinophilic meningoencephalitis. Pediatr Pathol 2: 345-352.
10. Gavin PJ, Kazacos KR, Shulman ST, (2005) Baylisascariasis. Clin Microbiol Rev 18: 703-718.
11. Kazacos KR, (2001) Baylisascaris procyonis and related species. In: Samuel WM, Pybus MJ, Kocan AA, editors. Parasitic diseases of wild mammals Ames Iowa State University Press pp. 301-341 (2nd).
12. Orihel T, Ash LR, (1995) Parasites in human tissue. Chicago American Society of Clinical Pathologists.
13. Beaver PC, Jung RC, Cupp EW, (1984) Clinical parasitology. Philadelphia Lea & Febiger Press.
14. Zhan B, Li T, Xiao S, Zheng F, Hawdon JM, (2001) Species-specific identification of human hookworms by PCR of the mitochondrial cytochrome oxidase I gene. J Parasitol 87: 1227-1229.
15. Hu M, Chilton NB, Gasser RB, (2004) The mitochondrial genomics of parasitic nematodes of socio-economic importance: recent progress, and implications for population genetics and systematics. Adv Parasitol 56: 133-212.
16. Gatcombe RR, Jothikumar N, Dangoudoubiyam S, Kazacos KR, Hill VR, (2010) Evaluation of a molecular beacon real-time PCR assay for detection of Baylisascaris procyonis in different soil types and water samples. Parasitol Res 106: 499-504.
17. Gasser RB, Monti JR, Bao ZQ, Polderman AM, Nansen P, Chilton NB, (1998) A mutation scanning approach for the identification of hookworm species and analysis of population variation. Mol Biochem Parasitol 92: 303-312.
18. Anderson TC, Blouin MS, Beech RN, (1998) Population biology of parasitic nematodes: applications of genetic markers. Adv Parasitol 41: 219-283.
19. Blouin MS, (1998) Mitochondrial DNA diversity in nematodes. J Helminthol 72: 285-289.
20. Blouin MS, (2002) Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer. Int J Parasitol 32: 527-531.
21. Gasser RB, (2006) Molecular tools- advances, opportunities and prospects. Vet Parasitol 136: 69-89.
22. Hu M, Gasser RB, (2006) Mitochondrial genomes of parasitic nematodes--progress and perspectives. Trends Parasitol 22: 78-84.
23. Xie Y, Zhang ZH, Wang CD, Lan JC, Li Y, et al. (2011) Complete mitochondrial genomes of Baylisascaris schroederi, Baylisascaris ailuri and Baylisascaris transfuga from Giant Panda, Red Panda and Polar Bear. Gene 482: 59-67.
24. Lavrov DV, Brown WM, (2001) Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAS and has a gene arrangement relatable to those of coelomate metazoans. Genetics 157: 621-637.
25. He Y, Jones J, Armstrong M, Lamberti F, Moens M, (2005) The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea): considerable economization in the length and structural features of encoded genes. J Mol Evol 61: 819-833.
26. Yatawara L, Wickramasinghe S, Rajapakse RP, Agatsuma T, (2010) The complete mitochondrial genome of Setaria digitata (Nematoda: Filarioidea): Mitochondrial gene content, arrangement and composition compared with other nematodes. Mol Biochem Parasitol 173: 32-38.
27. Okimoto R, Macfarlane JL, Clary DO, Wolstenholme DR, (1992) The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics 130: 471-498.
28. Li MW, Lin RQ, Song HQ, Wu XY, Zhu XQ, (2008) The complete mitochondrial genomes for three Toxocara species of human and animal health significance. BMC Genomics 9: 224.
29. Hu M, Chilton NB, Gasser RB, (2002) The mitochondrial genomes of the human hookworms, Ancylostoma duodenale and Necator americanus (Nematoda: Secernentea). Int J Parasitol 32: 145-158.
30. Jex AR, Waeschenbach A, Littlewood DT, Hu M, Gasser RB, (2008) The mitochondrial genome of Toxocara canis. PLoS Negl Trop Dis 2: e273.
31. Jex AR, Waeschenbach A, Hu M, van Wyk JA, Beveridge I, et al. (2009) The mitochondrial genomes of Ancylostoma caninum and Bunostomum phlebotomum--two hookworms of animal health and zoonotic importance. BMC Genomics 10: 79.
32. Jex AR, Hu M, Littlewood DT, Waeschenbach A, Gasser RB, (2008) Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda). BMC Genomics 9: 11.
33. Wickramasinghe S, Yatawara L, Rajapakse RP, Agatsuma T, (2009) Toxocara vitulorum (Ascaridida: Nematoda): mitochondrial gene content, arrangement and composition compared with other Toxocara species. Mol Biochem Parasitol 166: 89-92.
34. Saccone C, Gissi C, Lanave C, Larizza A, Pesole G, et al. (2000) Evolution of the mitochondrial genetic system: an overview. Gene 261: 153-159.
35. Sharp PM, Matassi G, (1994) Codon usage and genome evolution. Curr Opin Genet Dev 4: 851-860.
36. Duret L, Mouchiroud D, (1999) Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci U S A 96: 4482-4487.
37. Hu M, Chilton NB, Gasser RB, (2003) The mitochondrial genome of Strongyloides stercoralis (Nematoda)- idiosyncratic gene order and evolutionary implications. Int J Parasitol 33: 1393-1408.
38. Hu M, Gasser RB, Abs El-Osta YG, Chilton NB, (2003) Structure and organization of the mitochondrial genome of the canine heartworm, Dirofilaria immitis. Parasitology 127: 37-51.
39. Keddie EM, Higazi T, Unnasch TR, (1998) The mitochondrial genome of Onchocerca volvulus: sequence, structure and phylogenetic analysis. Mol Biochem Parasitol 95: 111-127.
40. Clayton DA, (1991) Replication and transcription of vertebrate mitochondrial DNA. Annu Rev Cell Biol 7: 453-478.
41. Leles D, Araújo A, Vicente AC, Iñiguez AM, (2009) Molecular diagnosis of ascariasis from human feces and description of a new Ascaris sp. genotype in Brazil. Vet Parasitol 163: 167-170.
42. He GZ, Niu LL, Yang GY, Deng JB, Wang S, et al. (2008) Sequence analysis of ITS-2 rDNA of roundworms from Ailuropoda melanoleuca and rare wild animals. Chin J Vet Sci 38: 933-938.
43. Nadler SA, Hudspeth DS, (1998) Ribosomal DNA and phylogeny of the Ascaridoidea (Nemata: Secernentea): implications for morphological evolution and classification. Mol Phylogenet Evol 10: 221-236.
44. Hartwich G, (1974) Keys to genera of the Ascaridoidea. In: Anderson RC, Chabaud AG, Willmott S, editors. CIH keys to the nematode parasites of vertebrates, Volume 2 Commonwealth Agricultural Bureaux, Farnham Royal pp. 1-14.
45. Blizzard EL, Davis CD, Henke S, Long DB, Hall CA, et al. (2010) Distribution, prevalence, and genetic characterization of Baylisascaris procyonis in selected areas of Georgia. J Parasitol 96: 1128-1133.
46. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
47. Kumar S, Tamura K, Nei M, (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5: 150-163.
48. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R, (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
49. Notredame C, Higgins DG, Heringa J, (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 302: 205-217.
50. Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
51. Abascal F, Zardoya R, Posada D, (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.
52. Swofford DL, (2002) PAUP*: Phylogenetic analysis using parsimony (and other methods). Sunderland, MA, Sinauer Associates.
53. Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
54. Okimoto R, Macfarlane JL, Wolstenholme DR, (1994) The Mitochondrial Ribosomal RNA Genes of the Nematodes Caenorhabditis elegans and Ascaris suum: Consensus Secondary-Structure Models and Conserved Nucleotide Sets for Phylogenetic Analysis. J Mol Evol 39: 598-613.