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Volumn 6, Issue 10, 2011, Pages

Recombine: A suite of programs for detection and analysis of meiotic recombination in whole-genome datasets

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMATID; CLASSIFICATION ALGORITHM; COMPUTER PROGRAM; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA MICROARRAY; FUNGAL STRAIN; GENE LOCATION; GENE SEGREGATION; GENETIC DATABASE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENOTYPE; MATHEMATICAL COMPUTING; MEIOSIS; MEIOTIC RECOMBINATION; NUCLEOTIDE SEQUENCE; PROCESS DEVELOPMENT; PROGENY; SEQUENCE ANALYSIS; YEAST; BIOLOGY; FUNGAL GENE; GENETICS; GENOME; INSTRUMENTATION; MEDICAL RESEARCH; METHODOLOGY;

EID: 80055038386     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0025509     Document Type: Article
Times cited : (34)

References (30)
  • 1
    • 34848888003 scopus 로고    scopus 로고
    • Branching out: meiotic recombination and its regulation
    • Cromie GA, Smith GR, (2007) Branching out: meiotic recombination and its regulation. Trends Cell Biol 17: 448-455.
    • (2007) Trends Cell Biol , vol.17 , pp. 448-455
    • Cromie, G.A.1    Smith, G.R.2
  • 2
    • 38449087657 scopus 로고    scopus 로고
    • The origin of human aneuploidy: where we have been, where we are going
    • Hassold T, (2007) The origin of human aneuploidy: where we have been, where we are going. Hum Mol Genet 16: 203-208.
    • (2007) Hum Mol Genet , vol.16 , pp. 203-208
    • Hassold, T.1
  • 3
    • 0001089519 scopus 로고
    • The analysis of tetrad data
    • Papazian HP, (1952) The analysis of tetrad data. Genetics 37: 175-188.
    • (1952) Genetics , vol.37 , pp. 175-188
    • Papazian, H.P.1
  • 5
    • 47949108144 scopus 로고    scopus 로고
    • High-resolution mapping of meiotic crossovers and non-crossovers in yeast
    • Mancera E, Bourgon R, Brozzi A, Huber W, Steinmetz LM, (2008) High-resolution mapping of meiotic crossovers and non-crossovers in yeast. Nature 454: 479-485.
    • (2008) Nature , vol.454 , pp. 479-485
    • Mancera, E.1    Bourgon, R.2    Brozzi, A.3    Huber, W.4    Steinmetz, L.M.5
  • 6
    • 70449704431 scopus 로고    scopus 로고
    • Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae
    • Qi J, Wijeratne AJ, Tomsho LP, Hu Y, Schuster SC, et al. (2009) Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae. BMC Genomics 10: 475.
    • (2009) BMC Genomics , vol.10 , pp. 475
    • Qi, J.1    Wijeratne, A.J.2    Tomsho, L.P.3    Hu, Y.4    Schuster, S.C.5
  • 8
    • 0037854709 scopus 로고    scopus 로고
    • The Mus81/Mms4 endonuclease acts independently of double-Holliday junction resolution to promote a distinct subset of crossovers during meiosis in budding yeast
    • de los Santos T, Hunter N, Lee C, Larkin B, Loidl J, et al. (2003) The Mus81/Mms4 endonuclease acts independently of double-Holliday junction resolution to promote a distinct subset of crossovers during meiosis in budding yeast. Genetics 164: 81-94.
    • (2003) Genetics , vol.164 , pp. 81-94
    • de los Santos, T.1    Hunter, N.2    Lee, C.3    Larkin, B.4    Loidl, J.5
  • 9
    • 64549148862 scopus 로고    scopus 로고
    • Array-based genotyping in S.cerevisiae using semi-supervised clustering
    • Bourgon R, Mancera E, Brozzi A, Steinmetz LM, Huber W, (2009) Array-based genotyping in S.cerevisiae using semi-supervised clustering. Bioinformatics 25: 1056-1062.
    • (2009) Bioinformatics , vol.25 , pp. 1056-1062
    • Bourgon, R.1    Mancera, E.2    Brozzi, A.3    Steinmetz, L.M.4    Huber, W.5
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 11
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, Wang J, (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24: 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 12
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R, (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 13
    • 73449113368 scopus 로고    scopus 로고
    • Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis
    • van Oeveren J, Janssen A, (2009) Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis. Methods Mol Biol 578: 73-91.
    • (2009) Methods Mol Biol , vol.578 , pp. 73-91
    • van Oeveren, J.1    Janssen, A.2
  • 14
    • 66449114324 scopus 로고    scopus 로고
    • SNP detection for massively parallel whole-genome resequencing
    • Li R, Li Y, Fang X, Yang H, Wang J, et al. (2009) SNP detection for massively parallel whole-genome resequencing. Genome Res 19: 1124-1132.
    • (2009) Genome Res , vol.19 , pp. 1124-1132
    • Li, R.1    Li, Y.2    Fang, X.3    Yang, H.4    Wang, J.5
  • 15
    • 84856603991 scopus 로고    scopus 로고
    • SEG-Map: A Novel Software for Genotype Calling and Genetic Map Construction from Next-generation Sequencing
    • Zhao Q, Huang X, Lin Z, Han B, (2010) SEG-Map: A Novel Software for Genotype Calling and Genetic Map Construction from Next-generation Sequencing. Rice 3: 98-102.
    • (2010) Rice , vol.3 , pp. 98-102
    • Zhao, Q.1    Huang, X.2    Lin, Z.3    Han, B.4
  • 16
    • 0028854229 scopus 로고
    • Modeling interference in genetic recombination
    • McPeek MS, Speed TP, (1995) Modeling interference in genetic recombination. Genetics 139: 1031-1044.
    • (1995) Genetics , vol.139 , pp. 1031-1044
    • McPeek, M.S.1    Speed, T.P.2
  • 17
    • 0028854899 scopus 로고
    • Statistical analysis of crossover interference using the chi-square model
    • Zhao H, Speed TP, McPeek MS, (1995) Statistical analysis of crossover interference using the chi-square model. Genetics 139: 1045-1056.
    • (1995) Genetics , vol.139 , pp. 1045-1056
    • Zhao, H.1    Speed, T.P.2    McPeek, M.S.3
  • 18
    • 33746189408 scopus 로고    scopus 로고
    • Crossover homeostasis in yeast meiosis
    • Martini E, Diaz RL, Hunter N, Keeney S, (2006) Crossover homeostasis in yeast meiosis. Cell 126: 285-295.
    • (2006) Cell , vol.126 , pp. 285-295
    • Martini, E.1    Diaz, R.L.2    Hunter, N.3    Keeney, S.4
  • 19
    • 0028353811 scopus 로고
    • Genetic characterization of pathogenic Saccharomyces cerevisiae isolates
    • McCusker JH, Clemons KV, Stevens DA, Davis RW, (1994) Genetic characterization of pathogenic Saccharomyces cerevisiae isolates. Genetics 136: 1261-1269.
    • (1994) Genetics , vol.136 , pp. 1261-1269
    • McCusker, J.H.1    Clemons, K.V.2    Stevens, D.A.3    Davis, R.W.4
  • 20
    • 34547913442 scopus 로고    scopus 로고
    • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    • Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci U S A 104: 12825-12830.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 12825-12830
    • Wei, W.1    McCusker, J.H.2    Hyman, R.W.3    Jones, T.4    Ning, Y.5
  • 23
    • 0001489694 scopus 로고
    • Crossing-over and interference in a multiply marked chromosome arm of Neurospora
    • Perkins DD, (1962) Crossing-over and interference in a multiply marked chromosome arm of Neurospora. Genetics 47: 1253-1274.
    • (1962) Genetics , vol.47 , pp. 1253-1274
    • Perkins, D.D.1
  • 24
    • 77949587649 scopus 로고    scopus 로고
    • Li H, Durbin R Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • Bioinformatics , vol.26 , pp. 589-595
  • 25
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: a fast search method for large DNA databases
    • Ning Z, Cox AJ, Mullikin JC, (2001) SSAHA: a fast search method for large DNA databases. Genome Res 11: 1725-1729.
    • (2001) Genome Res , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 26
    • 0028898765 scopus 로고
    • Estimating interference and linkage map distance from two-factor tetrad data
    • Stahl FW, Lande R, (1995) Estimating interference and linkage map distance from two-factor tetrad data. Genetics 139.
    • (1995) Genetics , vol.139
    • Stahl, F.W.1    Lande, R.2
  • 27
    • 79953795528 scopus 로고    scopus 로고
    • Genome-wide survey of post-meiotic segregation during yeast recombination
    • Mancera E, Bourgon R, Huber W, Steinmetz LM, (2011) Genome-wide survey of post-meiotic segregation during yeast recombination. Genome Biol 12: R36.
    • (2011) Genome Biol , vol.12
    • Mancera, E.1    Bourgon, R.2    Huber, W.3    Steinmetz, L.M.4
  • 28
    • 55649098341 scopus 로고    scopus 로고
    • The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing
    • Sorber K, Chiu C, Webster D, Dimon M, Ruby JG, et al. (2008) The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. PLoS One 3: e3495.
    • (2008) PLoS One , vol.3
    • Sorber, K.1    Chiu, C.2    Webster, D.3    Dimon, M.4    Ruby, J.G.5
  • 29
    • 0030831182 scopus 로고    scopus 로고
    • Genetic and physical maps of Saccharomyces cerevisiae
    • Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, et al. (1997) Genetic and physical maps of Saccharomyces cerevisiae. Nature 387 (6632 Suppl): 67-73.
    • (1997) Nature , vol.387 , Issue.6632 SUPPL. , pp. 67-73
    • Cherry, J.M.1    Ball, C.2    Weng, S.3    Juvik, G.4    Schmidt, R.5


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