Gene profiling of early and advanced liver disease in chronic hepatitis C patients

Hepatology International

Volumn 5, Issue 3, 2011, Pages 782-788

  Khalid, Saira Sarfraz ^a   Hamid, Saeed ^a   Siddiqui, Anwar A ^a   Qureshi, Asaf ^b   Qureshi, Nilofer ^b  

^a AGA KHAN UNIVERSITY HOSPITAL   (Pakistan)

^b UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

Author keywords

Gene expression; HCV; Microarray

Indexed keywords

ADULT; ARTICLE; CELL DEATH; CELL GROWTH; CELL PROLIFERATION; CELL TRANSFORMATION; CLINICAL ARTICLE; CONTROLLED STUDY; DISEASE COURSE; EXTRACELLULAR MATRIX; FEMALE; GENE EXPRESSION PROFILING; GENE FUNCTION; HEPATITIS; HEPATITIS C; HUMAN; HUMAN TISSUE; LIVER BIOPSY; LIVER CELL CARCINOMA; LIVER DISEASE; LIVER FIBROSIS; LIVER FUNCTION; LIVER HISTOLOGY; MALE; MICROARRAY ANALYSIS; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TISSUE STRUCTURE; TUMOR GENE;

EID: 80054971709     PISSN: 19360533     EISSN: 19360541     Source Type: Journal    
DOI: 10.1007/s12072-011-9252-4     Document Type: Article

References (27)

1. Shepard CW, Finelli L, Alter MJ. Global epidemiology of hepatitis C virus infection. Lancet Infect Dis 2005;5(9):558-567 (Pubitemid 41196755)
2. Hamid S, Umar M, Alam A, Siddiqui A, Qureshi H, Butt J. PSG consensus statement on management of hepatitis C virus infection-2003. JPMA 2004;54(3):146-150 (Pubitemid 38525224)
3. Aslam M, Aslam J. Seroprevalence of the antibody to hepatitis C in select groups in the Punjab region of Pakistan. J Clin Gastroenterol 2001;33(5):407-411 (Pubitemid 33026728)
4. Muhammad N, Jan MA. Frequency of hepatitis "C" in Buner, NWFP. J Coll Physicians Surg Pak 2005;15(1):11-14
5. Akhtar S, Moatter T. Multilevel modeling of intra-household spread of hepatitis C virus infection, Karachi, Pakistan. Am J Trop Med Hyg 2007;76(3):446-449 (Pubitemid 351627735)
6. Raza SA, Clifford GM, Franceschi S. Worldwide variation in the relative importance of hepatitis B and hepatitis C viruses in hepatocellular carcinoma: a systematic review. Br J Cancer 2007;96(7):1127-1134 (Pubitemid 46608308)
7. Liang TJ, Heller T. Pathogenesis of hepatitis C-associated hepatocellular carcinoma Gastroenterology 2004;127(5 Suppl 1):S62-S71 (Pubitemid 39423371)
8. DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, et al. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat Genet 1996;14(4):457-460 (Pubitemid 26414590)
9. Patil MA, Chua MS, Pan KH, Lin R, Lih CJ, Cheung ST, et al. An integrated data analysis approach to characterize genes highly expressed in hepatocellular carcinoma. Oncogene 2005;24(23):3737-3747 (Pubitemid 40826873)
10. Shackel NA, McGuinness PH, Abbott CA, Gorrell MD, McCaughan GW. Insights into the pathobiology of hepatitis C virus-associated cirrhosis: Analysis of intrahepatic differential gene expression. Am J Pathol 2002;160(2):641-654 (Pubitemid 34160342)
11. Smith MW, Yue ZN, Korth MJ, Do HA, Boix L, Fausto N, et al. Hepatitis C virus and liver disease: global transcriptional profiling and identification of potential markers. Hepatology (Baltimore, MD) 2003;38(6):1458-1467 (Pubitemid 37466972)
12. Asselah T, Bieche I, Laurendeau I, Paradis V, Vidaud D, Degott C, et al. Liver gene expression signature of mild fibrosis in patients with chronic hepatitis C. Gastroenterology 2005;129(6):2064-2075 (Pubitemid 41772981)
13. Bieche I, Asselah T, Laurendeau I, Vidaud D, Degot C, Paradis V, et al. Molecular profiling of early stage liver fibrosis in patients with chronic hepatitis C virus infection. Virology 2005;332(1):130-144 (Pubitemid 40127235)
14. Zein NN. Clinical significance of hepatitis C virus genotypes. Clin Microbiol Rev 2000;13(2):223-235 (Pubitemid 30205426)
15. Lonardo A, Loria P, Adinolfi LE, Carulli N, Ruggiero G. Hepatitis C and steatosis: a reappraisal. J Viral Hepat 2006;13(2):73-80
16. Batts KP, Ludwig J. Chronic hepatitis. An update on terminology and reporting. Am J Surg Pathol 1995;19(12):1409-1417
17. Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2 (-Delta Delta C (T)) method. Methods (San Diego, CA) 2001;25(4):402-408 (Pubitemid 34164012)
18. Sarfraz S, Hamid S, Siddiqui A, Hussain S, Pervez S, Alexander G. Altered expression of cell cycle and apoptotic proteins in chronic hepatitis C virus infection. BMC Microbiol 2008;8:133
19. Lau DT, Luxon BA, Xiao SY, Beard MR, Lemon SM. Intrahepatic gene expression profiles and alpha-smooth muscle actin patterns in hepatitis C virus induced fibrosis. Hepatology (Baltimore, MD) 2005;42(2):273-281 (Pubitemid 41061079)
20. Shao RX, Hoshida Y, Otsuka M, Kato N, Tateishi R, Teratani T, et al. Hepatic gene expression profiles associated with fibrosis progression and hepatocarcinogenesis in hepatitis C patients. World J Gastroenterol 2005;11(13):1995-1999 (Pubitemid 40520999)
21. Abid K, Pazienza V, de Gottardi A, Rubbia-Brandt L, Conne B, Pugnale P, et al. An in vitro model of hepatitis C virus genotype 3a-associated triglycerides accumulation. J Hepatol 2005;42(5):744-751
22. Capiod T, Shuba Y, Skryma R, Prevarskaya N. Calcium signalling and cancer cell growth. Subcell Biochem 2007;45:405-427
23. Marshall A, Rushbrook S, Davies SE, Morris LS, Scott IS, Vowler SL, et al. Relation between hepatocyte G1 arrest, impaired hepatic regeneration, and fibrosis in chronic hepatitis C virus infection. Gastroenterology 2005;128(1):33-42 (Pubitemid 40039956)
24. Sze KM, Ching YP, Jin DY, Ng IO. Association of MAD2 expression with mitotic checkpoint competence in hepatoma cells. J Biomed Sci 2004;11(6):920-927 (Pubitemid 39664246)
25. Iolascon A, Giordani L, Moretti A, Basso G, Borriello A, Della Ragione F. Analysis of CDKN2A, CDKN2B, CDKN2C, and cyclin Ds gene status in hepatoblastoma. Hepatology 1998;27(4):989-995 (Pubitemid 28160484)
26. Smith MW, Yue ZN, Geiss GK, Sadovnikova NY, Carter VS, Boix L, et al. Identification of novel tumor markers in hepatitis C virus-associated hepatocellular carcinoma. Cancer Res 2003;63(4):859-864 (Pubitemid 36231988)
27. Kawasaki T, Yokoi S, Tsuda H, Izumi H, Kozaki K, Aida S, et al. BCL2L2 is a probable target for novel 14q11.2 amplification detected in a non-small cell lung cancer cell line. Cancer Sci 2007;98(7):1070-1077 (Pubitemid 46865393)