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Volumn 20, Issue 22, 2011, Pages 4422-4429

Increased levels of noisy splicing in cancers, but not for oncogene-derived transcripts

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 80054962704     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddr370     Document Type: Article
Times cited : (32)

References (25)
  • 2
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan, Q., Shai, O., Lee, L.J., Frey, J. and Blencowe, B.J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet., 40, 1413-1415.
    • (2008) Nat. Genet. , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, J.4    Blencowe, B.J.5
  • 5
    • 33645833000 scopus 로고    scopus 로고
    • Unbalanced alternative splicing and its significance in cancer
    • Venables, J.P. (2006) Unbalanced alternative splicing and its significance in cancer. BioEssays, 28, 378-386.
    • (2006) BioEssays , vol.28 , pp. 378-386
    • Venables, J.P.1
  • 6
    • 34447106755 scopus 로고    scopus 로고
    • Alternative splicing in cancer: noise, functional, or systematic?
    • Skotheim, R.I. and Nees, M. (2007) Alternative splicing in cancer: noise, functional, or systematic? Int. J. Biochem. Cell Biol., 39, 1432-1449.
    • (2007) Int. J. Biochem. Cell Biol. , vol.39 , pp. 1432-1449
    • Skotheim, R.I.1    Nees, M.2
  • 7
    • 34548758543 scopus 로고    scopus 로고
    • Splicing in disease: disruption of the splicing code and the decoding machinery
    • Wang, G.S. and Cooper, T.A. (2007) Splicing in disease: disruption of the splicing code and the decoding machinery. Nat. Rev. Genet., 8, 749-761.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 749-761
    • Wang, G.S.1    Cooper, T.A.2
  • 8
    • 0037310045 scopus 로고    scopus 로고
    • Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer
    • Wang, Z., Lo, H.S., Yang, H., Gere, S., Hu, Y., Buetow, K.H. and Lee, M.P. (2003) Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer. Cancer Res., 63, 655-657.
    • (2003) Cancer Res , vol.63 , pp. 655-657
    • Wang, Z.1    Lo, H.S.2    Yang, H.3    Gere, S.4    Hu, Y.5    Buetow, K.H.6    Lee, M.P.7
  • 9
    • 0141974926 scopus 로고    scopus 로고
    • Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences
    • Xu, Q. (2003) Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences. Nucleic Acids Res., 31, 5635-5643.
    • (2003) Nucleic Acids Res , vol.31 , pp. 5635-5643
    • Xu, Q.1
  • 10
    • 2442551589 scopus 로고    scopus 로고
    • Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment
    • Hui, L., Zhang, X., Wu, X., Lin, Z., Wang, Q., Li, Y. and Hu, G. (2004) Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment. Oncogene, 23, 3013-3023.
    • (2004) Oncogene , vol.23 , pp. 3013-3023
    • Hui, L.1    Zhang, X.2    Wu, X.3    Lin, Z.4    Wang, Q.5    Li, Y.6    Hu, G.7
  • 11
    • 37349089805 scopus 로고    scopus 로고
    • Insights into the connection between cancer and alternative splicing
    • Kim, E., Goren, A. and Ast, G. (2008) Insights into the connection between cancer and alternative splicing. Trends Genet., 24, 7-10.
    • (2008) Trends Genet , vol.24 , pp. 7-10
    • Kim, E.1    Goren, A.2    Ast, G.3
  • 12
    • 62749098351 scopus 로고    scopus 로고
    • A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis
    • He, C., Zhou, F., Zuo, Z., Cheng, H. and Zhou, R. (2009) A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis. PloS ONE, 4, e4732.
    • (2009) PloS ONE , vol.4
    • He, C.1    Zhou, F.2    Zuo, Z.3    Cheng, H.4    Zhou, R.5
  • 14
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis, B.P., Green, R.E. and Brenner, S.E. (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl Acad. Sci. USA, 100, 189-192.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 15
    • 67649289898 scopus 로고    scopus 로고
    • Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay
    • Zhang, Z.G., Xin, D.D., Wang, P., Zhou, L., Hu, L.D., Kong, X.Y. and Hurst, L.D. (2009) Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay. BMC Biol., 7, 13.
    • (2009) BMC Biol , vol.7 , pp. 13
    • Zhang, Z.G.1    Xin, D.D.2    Wang, P.3    Zhou, L.4    Hu, L.D.5    Kong, X.Y.6    Hurst, L.D.7
  • 16
    • 78650689920 scopus 로고    scopus 로고
    • Noisy splicing drives mRNA isoform diversity in human cells
    • Pickrell, J.K., Pai, A.A., Gilad, Y. and Pritchard, J.K. (2010) Noisy splicing drives mRNA isoform diversity in human cells. PLoS Genet., 6, e1001236.
    • (2010) PLoS Genet , vol.6
    • Pickrell, J.K.1    Pai, A.A.2    Gilad, Y.3    Pritchard, J.K.4
  • 18
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: a genomic mapping and alignment program for mRNA and EST sequences
    • Wu, T.D. and Watanabe, C.K. (2005) GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics, 21, 1859-1875.
    • (2005) Bioinformatics , vol.21 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2
  • 21
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan-an integration platform for the signature-recognition methods in InterPro
    • Zdobnov, E.M. and Apweiler, R. (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics, 17, 847-848.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 24
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
    • Krogh, A., Larsson, B., von Heijne, G. and Sonnhammer, E.L.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol., 305, 567-580.
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.L.4
  • 25
    • 0032972509 scopus 로고    scopus 로고
    • PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization
    • Nakai, K. and Horton, P. (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci., 24, 34-35.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 34-35
    • Nakai, K.1    Horton, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.