-
1
-
-
0014757386
-
A general method applicable to the search of similarity in the amino-acid sequence of two proteins
-
10.1016/0022-2836(70)90057-4, 5420325
-
Needleman SB, Wunsch CD. A general method applicable to the search of similarity in the amino-acid sequence of two proteins. J Mol Biol 1970, 48:443-453. 10.1016/0022-2836(70)90057-4, 5420325.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
2
-
-
0019887799
-
Identification of common molecular subsequences
-
10.1016/0022-2836(81)90087-5, 7265238
-
Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol 1981, 147:195-197. 10.1016/0022-2836(81)90087-5, 7265238.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers E, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.J.5
-
4
-
-
0021919480
-
Rapid and sensitive protein similarity searches
-
10.1126/science.2983426, 2983426
-
Lipman DJ, Pearson WR. Rapid and sensitive protein similarity searches. Science 1985, 227:1435-1441. 10.1126/science.2983426, 2983426.
-
(1985)
Science
, vol.227
, pp. 1435-1441
-
-
Lipman, D.J.1
Pearson, W.R.2
-
5
-
-
0037314081
-
A generalized global alignment algorithm
-
10.1093/bioinformatics/19.2.228, 12538243
-
Huang X, Chao KM. A generalized global alignment algorithm. Bioinformatics 2003, 19:228-233. 10.1093/bioinformatics/19.2.228, 12538243.
-
(2003)
Bioinformatics
, vol.19
, pp. 228-233
-
-
Huang, X.1
Chao, K.M.2
-
6
-
-
33846912471
-
Dynamic use of multiple parameter sets in sequence alignment
-
10.1093/nar/gkm278, 1802605, 17182633
-
Huang X, Brutlag DL. Dynamic use of multiple parameter sets in sequence alignment. Nucleic Acids Res 2007, 35:678-686. 10.1093/nar/gkm278, 1802605, 17182633.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 678-686
-
-
Huang, X.1
Brutlag, D.L.2
-
7
-
-
0034518144
-
Iterative sequence secondary structure search for protein homologs: Comparison with amino acid sequence alignments and application to fold recognition in genome databases
-
10.1093/bioinformatics/16.11.988, 11159310
-
Wallqvist A, Fukunishi Y, Murphy LR, Fadel A, Levy RM. Iterative sequence secondary structure search for protein homologs: Comparison with amino acid sequence alignments and application to fold recognition in genome databases. Bioinformatics 2000, 16:988-1002. 10.1093/bioinformatics/16.11.988, 11159310.
-
(2000)
Bioinformatics
, vol.16
, pp. 988-1002
-
-
Wallqvist, A.1
Fukunishi, Y.2
Murphy, L.R.3
Fadel, A.4
Levy, R.M.5
-
8
-
-
33747584436
-
Information on the secondary structure improves the quality of protein sequence alignment
-
Litvinov II, Lobanov MI, Mironov AA, Finkelstein MA. Information on the secondary structure improves the quality of protein sequence alignment. Molecular Biology 2006, 40:474-480.
-
(2006)
Molecular Biology
, vol.40
, pp. 474-480
-
-
Litvinov, I.I.1
Lobanov, M.I.2
Mironov, A.A.3
Finkelstein, M.A.4
-
9
-
-
0019858614
-
Similar amino acid sequences: chance or common ancestry?
-
10.1126/science.7280687, 7280687
-
Doolittle RF. Similar amino acid sequences: chance or common ancestry?. Science 1981, 214:149-159. 10.1126/science.7280687, 7280687.
-
(1981)
Science
, vol.214
, pp. 149-159
-
-
Doolittle, R.F.1
-
10
-
-
75849116590
-
A minimal sequence code for switching protein structure and function
-
10.1073/pnas.0906408106, 2779201, 19923431
-
Alexander PA, He Y, Chen Y, Orban J, Bryan PN. A minimal sequence code for switching protein structure and function. Proc Natl Acad Sci USA 2009, 106:21149-21154. 10.1073/pnas.0906408106, 2779201, 19923431.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21149-21154
-
-
Alexander, P.A.1
He, Y.2
Chen, Y.3
Orban, J.4
Bryan, P.N.5
-
11
-
-
0025372332
-
Determination of reliable regions in protein sequence alignments
-
Vingron M, Argos P. Determination of reliable regions in protein sequence alignments. Prot Eng 1990, 3:565-569.
-
(1990)
Prot Eng
, vol.3
, pp. 565-569
-
-
Vingron, M.1
Argos, P.2
-
12
-
-
0029921179
-
Quantifying the local reliability of a sequence alignment
-
Mevissen HT, Vingron M. Quantifying the local reliability of a sequence alignment. Prot Eng 1996, 9:127-132.
-
(1996)
Prot Eng
, vol.9
, pp. 127-132
-
-
Mevissen, H.T.1
Vingron, M.2
-
13
-
-
0036305770
-
A novel approach to local reliability of sequence alignments
-
Schlosshauer M, Olsson M. A novel approach to local reliability of sequence alignments. Bioinformatics 2002, 6:847-854.
-
(2002)
Bioinformatics
, vol.6
, pp. 847-854
-
-
Schlosshauer, M.1
Olsson, M.2
-
14
-
-
0029046744
-
An assessment of amino acid exchange matrices in aliging protein sequences: the twilight zone revisited
-
10.1006/jmbi.1995.0340, 7602593
-
Vogt G, Etzold T, Argos P. An assessment of amino acid exchange matrices in aliging protein sequences: the twilight zone revisited. J Mol Biol 1995, 249:816-831. 10.1006/jmbi.1995.0340, 7602593.
-
(1995)
J Mol Biol
, vol.249
, pp. 816-831
-
-
Vogt, G.1
Etzold, T.2
Argos, P.3
-
15
-
-
0034615787
-
Structure-based evaluation of squence coparison and fold recognition alignment accuracy
-
10.1006/jmbi.2000.3615, 10736233
-
Domingues FS, Lackner P, Andreeva A, Sippl MJ. Structure-based evaluation of squence coparison and fold recognition alignment accuracy. J Mol Biol 2000, 297:1003-1013. 10.1006/jmbi.2000.3615, 10736233.
-
(2000)
J Mol Biol
, vol.297
, pp. 1003-1013
-
-
Domingues, F.S.1
Lackner, P.2
Andreeva, A.3
Sippl, M.J.4
-
16
-
-
1042291210
-
From analysis of protein structural alignments toward a novel approach to align protein sequences
-
Sunyaev SR, Bogopolsky GA, Oleynikova NV, Vlasov PK, Finkelstein AV, Roytberg MA. From analysis of protein structural alignments toward a novel approach to align protein sequences. Proteins: Structure, Function and Bioinforrmatics 2004, 54:569-582.
-
(2004)
Proteins: Structure, Function and Bioinforrmatics
, vol.54
, pp. 569-582
-
-
Sunyaev, S.R.1
Bogopolsky, G.A.2
Oleynikova, N.V.3
Vlasov, P.K.4
Finkelstein, A.V.5
Roytberg, M.A.6
-
17
-
-
43449112176
-
Efficiency of alignment procedure in respect of reconstruction reliability
-
Polyanovskii VO, Demchuk EY, Tumanyan VG. Efficiency of alignment procedure in respect of reconstruction reliability. Molecular Biology 1995, 28:833-835.
-
(1995)
Molecular Biology
, vol.28
, pp. 833-835
-
-
Polyanovskii, V.O.1
Demchuk, E.Y.2
Tumanyan, V.G.3
-
19
-
-
0000228203
-
A model of evolutionary change in proteins
-
Washington: National Biomedical Research Foundation, Dayhoff M
-
Dayhoff M, Schwartz R, Orcutt B. A model of evolutionary change in proteins. Atlas of protein sequence and structure 1978, 345-352. Washington: National Biomedical Research Foundation, Dayhoff M.
-
(1978)
Atlas of protein sequence and structure
, pp. 345-352
-
-
Dayhoff, M.1
Schwartz, R.2
Orcutt, B.3
-
20
-
-
0027483434
-
Empirical and structural models for insertions and deletions in the divergent evolution of proteins
-
10.1006/jmbi.1993.1105, 8445636
-
Benner SA, Cohen MA, Gonnet GH. Empirical and structural models for insertions and deletions in the divergent evolution of proteins. J Mol Biol 1993, 229:1065-1082. 10.1006/jmbi.1993.1105, 8445636.
-
(1993)
J Mol Biol
, vol.229
, pp. 1065-1082
-
-
Benner, S.A.1
Cohen, M.A.2
Gonnet, G.H.3
-
21
-
-
0036854402
-
Empirical determination of effective gap penalties for sequence comparison
-
10.1093/bioinformatics/18.11.1500, 12424122
-
Reese JT, Pearson WR. Empirical determination of effective gap penalties for sequence comparison. Bioinformatics 2002, 18:1500-1507. 10.1093/bioinformatics/18.11.1500, 12424122.
-
(2002)
Bioinformatics
, vol.18
, pp. 1500-1507
-
-
Reese, J.T.1
Pearson, W.R.2
|