A novel approach to local reliability of sequence alignments

Bioinformatics

Volumn 18, Issue 6, 2002, Pages 847-854

  Schlosshauer, Maximilian ^a   Ohlsson, Mattias ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C; CYTOCHROME C2;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; EVALUATION; PRIORITY JOURNAL; PROBABILITY; PROTEIN STRUCTURE; QUANTITATIVE ANALYSIS; RELIABILITY; SEQUENCE ALIGNMENT; VALIDATION PROCESS;

EID: 0036305770     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.6.847     Document Type: Article

References (18)

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3. Exhaustive matching of the entire protein sequence database
4. A Potts neuron approach to communication routing
5. Optimization by simulated annealing
6. Finite-temperature sequence alignment
7. Quantifying the local reliability of a sequence alignment
8. A reliable sequence alignment method based on probabilities of residue correspondences
9. On near-optimal alignments of biological sequences
10. A general method applicable to the search for similarities in the amino acid sequence of two proteins
11. A data bank merging related protein structures and sequences
12. A new method for mapping optimization problems onto neural networks
13. Neural optimization
14. A simple method to generate non-trivial alternate alignments of protein sequences
15. Identification of common molecular subsequences
16. Determination of reliable regions in protein sequence alignments
17. Sequence alignment and penalty choice: Review of concepts, case studies and implications
18. Suboptimal sequence alignment in molecular biology: Alignment with error analysis