메뉴 건너뛰기




Volumn , Issue , 2011, Pages 356-361

Intrinsic noise induced state transition in coupled positive and negative feedback genetic circuit

Author keywords

[No Author keywords available]

Indexed keywords

BIFURCATION ANALYSIS; BISTABLE SWITCHES; BISTABLES; DETERMINISTIC SYSTEMS; DYNAMICAL BEHAVIORS; ENGINEERING APPLICATIONS; ENGINEERING DESIGN; GENETIC CIRCUITS; INTRINSIC NOISE; LARGE SYSTEM; REGULATORY CIRCUITS; STABLE STATE; STABLE STEADY STATE; STATE TRANSITIONS; STEADY STATE; STOCHASTIC APPROACH; STOCHASTIC SIMULATIONS; THREE-COMPONENT; UNSTABLE STEADY STATE;

EID: 80054867615     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISB.2011.6033178     Document Type: Conference Paper
Times cited : (5)

References (40)
  • 3
    • 71149099313 scopus 로고    scopus 로고
    • The incoherent feedforward loop can provide fold-change detection in gene regulation
    • Dec
    • L. Goentoro, O. Shoval, M. W. Kirschner, and U. Alon, "The incoherent feedforward loop can provide fold-change detection in gene regulation", Mol. Cell, vol. 36, no. 5, pp. 894-899, Dec. 2009.
    • (2009) Mol. Cell , vol.36 , Issue.5 , pp. 894-899
    • Goentoro, L.1    Shoval, O.2    Kirschner, M.W.3    Alon, U.4
  • 5
    • 0345359924 scopus 로고    scopus 로고
    • A positive-feedback-based bistable 'memory module' that governs a cell fate decision
    • Nov
    • W. Xiong and J. E. Ferrell, "A positive-feedback-based bistable 'memory module' that governs a cell fate decision", Nature, vol. 426, pp. 460-465, Nov. 2003.
    • (2003) Nature , vol.426 , pp. 460-465
    • Xiong, W.1    Ferrell, J.E.2
  • 6
    • 28844491402 scopus 로고    scopus 로고
    • Molecular communication through stochastic synchronization induced by extracellular fluctuations
    • art. no. 178103, Oct
    • T. Zhou, L. Chen, and K. Aihara, "Molecular communication through stochastic synchronization induced by extracellular fluctuations", Phys. Rev. Lett., vol. 95, no. 17, art. no. 178103, Oct. 2005.
    • (2005) Phys. Rev. Lett. , vol.95 , Issue.17
    • Zhou, T.1    Chen, L.2    Aihara, K.3
  • 7
    • 0033230728 scopus 로고    scopus 로고
    • Multistability: A major means of differentiation and evolution in biological systems
    • Nov
    • M. Laurent and N. Kellershohn, "Multistability: a major means of differentiation and evolution in biological systems", Trends Biochem. Sci., vol. 24, no. 11, pp. 418-422, Nov. 1999.
    • (1999) Trends Biochem. Sci. , vol.24 , Issue.11 , pp. 418-422
    • Laurent, M.1    Kellershohn, N.2
  • 8
    • 56749160113 scopus 로고    scopus 로고
    • Design principles of biochemical oscillators
    • Dec
    • B. Novák and J. J. Tyson, "Design principles of biochemical oscillators", Nat. Rev. Mol. Cell Biol., vol. 9, no. 12, pp. 981-991, Dec. 2008.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , Issue.12 , pp. 981-991
    • Novák, B.1    Tyson, J.J.2
  • 9
    • 1442354192 scopus 로고    scopus 로고
    • Multistability in the lactose utilization network of Escherichia coli
    • Feb
    • E. M. Ozbudak, M. Thattai, H. N. Lim, B. I. Shraiman, and A. V. Oudenaarden, "Multistability in the lactose utilization network of Escherichia coli", Nature, vol. 427, pp. 737-740, Feb. 2004.
    • (2004) Nature , vol.427 , pp. 737-740
    • Ozbudak, E.M.1    Thattai, M.2    Lim, H.N.3    Shraiman, B.I.4    Oudenaarden, A.V.5
  • 10
    • 33748058888 scopus 로고    scopus 로고
    • Bistability in bacteria
    • Aug
    • D. Dubnau and R. Losick, "Bistability in bacteria", Mol. Microbiol., vol. 61, no. 3, pp. 564-572, Aug. 2006.
    • (2006) Mol. Microbiol. , vol.61 , Issue.3 , pp. 564-572
    • Dubnau, D.1    Losick, R.2
  • 11
    • 46849090495 scopus 로고    scopus 로고
    • Robust, tunable biological oscillations from interlinked positive and negative feedback loops
    • Jul
    • T. Y. Tsai, Y. S. Choi, W. Ma, J. R. Pomerening, C. Tang, and J. E. Jr. Ferrell, "Robust, tunable biological oscillations from interlinked positive and negative feedback loops", Science, vol. 321, pp. 126-129, Jul. 2008.
    • (2008) Science , vol.321 , pp. 126-129
    • Tsai, T.Y.1    Choi, Y.S.2    Ma, W.3    Pomerening, J.R.4    Tang, C.5    Ferrell Jr., J.E.6
  • 12
    • 78149343153 scopus 로고    scopus 로고
    • A comparative analysis of synthetic genetic oscillators
    • Nov
    • O. Purcell, N. J. Savery, C. S. Grierson, and M. D. Bernardo, "A comparative analysis of synthetic genetic oscillators", J. R. Soc. Interface, vol. 7, no. 52, pp. 1503-1524, Nov. 2010.
    • (2010) J. R. Soc. Interface , vol.7 , Issue.52 , pp. 1503-1524
    • Purcell, O.1    Savery, N.J.2    Grierson, C.S.3    Bernardo, M.D.4
  • 13
    • 57049159362 scopus 로고    scopus 로고
    • A fast, robust and tunable synthetic gene oscillator
    • Nov
    • J. Stricker, S. Cookson, M. R. bennett, W. H. Mather, L. S. Tsimring, and J. Hasty, "A fast, robust and tunable synthetic gene oscillator", Nature, vol. 456, no. 7221, pp. 516-519, Nov. 2008.
    • (2008) Nature , vol.456 , Issue.7221 , pp. 516-519
    • Stricker, J.1    Cookson, S.2    Bennett, M.R.3    Mather, W.H.4    Tsimring, L.S.5    Hasty, J.6
  • 14
    • 27144517984 scopus 로고    scopus 로고
    • Interlinked fast and slow positive feedback loops drive reliable cell decisions
    • Oct
    • O. Brandman, J. E. Jr. Ferrell, R. Li, and T. Meyer, "Interlinked fast and slow positive feedback loops drive reliable cell decisions", Science, vol. 310, no. 5747, pp. 496-498, Oct. 2005.
    • (2005) Science , vol.310 , Issue.5747 , pp. 496-498
    • Brandman Jr., O.J.E.1    Ferrell, R.L.2    Meyer, T.3
  • 15
    • 68949136612 scopus 로고    scopus 로고
    • Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks
    • art. no. 011926, Jul
    • X. Tian, X. Zhang, F. Liu, and W. Wang, "Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks", Phys. Rev. E, vol. 80, art. no. 011926, Jul. 2009.
    • (2009) Phys. Rev. E , vol.80
    • Tian, X.1    Zhang, X.2    Liu, F.3    Wang, W.4
  • 16
    • 0037041888 scopus 로고    scopus 로고
    • Synthetic gene network for entraining and amplifying cellular oscillations
    • art. no. 148101, Apr
    • J. Hasty, M. Dolnik, V. Rottschäfer, and J. J. Collins, "Synthetic gene network for entraining and amplifying cellular oscillations", Phys. Rev. Lett., vol. 88, art. no. 148101, Apr. 2002.
    • (2002) Phys. Rev. Lett. , vol.88
    • Hasty, J.1    Dolnik, M.2    Rottschäfer, V.3    Collins, J.J.4
  • 17
    • 34247893962 scopus 로고    scopus 로고
    • Dynamics of a minial model of interlocked positive and negative feedback loops of transcriptional regulation by cAMP-response element binding proteins
    • May
    • H. Song, P. Smolen, E. Av-Ron, D. A. Baxter, and J. H. Byrne, "Dynamics of a minial model of interlocked positive and negative feedback loops of transcriptional regulation by cAMP-response element binding proteins", Biophys. J., vol. 92, pp. 3407-3424, May 2007.
    • (2007) Biophys. J. , vol.92 , pp. 3407-3424
    • Song, H.1    Smolen, P.2    Av-Ron, E.3    Baxter, D.A.4    Byrne, J.H.5
  • 18
    • 77952918610 scopus 로고    scopus 로고
    • Simplified models of biological networks
    • Jun
    • K. Sneppen, S. Krishna, and S. Semsey, "Simplified models of biological networks", Annu. Rev. Biophys., vol. 39, pp. 43-59, Jun. 2010.
    • (2010) Annu. Rev. Biophys. , vol.39 , pp. 43-59
    • Sneppen, K.1    Krishna, S.2    Semsey, S.3
  • 19
    • 57349131603 scopus 로고    scopus 로고
    • A genetic timer through noise-induced stabilization of an unstable state
    • Oct
    • M. Turcotte, J. Garcia-Ojalvo, and G. M. Süel, "A genetic timer through noise-induced stabilization of an unstable state", Proc. Natl. Acad. Sci. USA, vol. 105, no. 41, pp. 15732-15737, Oct. 2008.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , Issue.41 , pp. 15732-15737
    • Turcotte, M.1    Garcia-Ojalvo, J.2    Süel, G.M.3
  • 20
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • D. Gillespie, "Exact stochastic simulation of coupled chemical reactions", J. Phys. Chem., vol. 81, no. 25, pp. 2340-2361, 1977.
    • (1977) J. Phys. Chem. , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.1
  • 21
    • 0035933994 scopus 로고    scopus 로고
    • Approximate accelerated stochastic simulation of chemically reacting systems
    • Jul
    • D. Gillespie, "Approximate accelerated stochastic simulation of chemically reacting systems", J. Chem. Phys., vol. 115, no. 4, pp. 1716-1733, Jul. 2001.
    • (2001) J. Chem. Phys. , vol.115 , Issue.4 , pp. 1716-1733
    • Gillespie, D.1
  • 22
    • 22944451159 scopus 로고    scopus 로고
    • Accurate hybrid simulation of a system of coupled chemical or biochemical reactions
    • art. no. 054103, Feb
    • H. Salis and Y. Kaznessis, "Accurate hybrid simulation of a system of coupled chemical or biochemical reactions", J. Chem. Phys., vol. 122, art. no. 054103, Feb. 2005.
    • (2005) J. Chem. Phys. , vol.122
    • Salis, H.1    Kaznessis, Y.2
  • 23
    • 26844581913 scopus 로고    scopus 로고
    • Delay-induced stochastic oscillations in gene regulation
    • Oct
    • D. Bratsun, D. Volfson, L. S. Tsimring, and J. Hasty, "Delay-induced stochastic oscillations in gene regulation", Proc. Natl. Acad. Sci. USA, vol. 102, no. 41, pp. 14593-14598, Oct. 2005.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , Issue.41 , pp. 14593-14598
    • Bratsun, D.1    Volfson, D.2    Tsimring, L.S.3    Hasty, J.4
  • 24
    • 33749336242 scopus 로고    scopus 로고
    • Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation
    • art. no. e117, Sep
    • M. Barrio, K. Burrage, A. Leier, and T. Tian, "Oscillatory regulation of Hes1: discrete stochastic delay modelling and simulation", PLOS Comput. Biol., vol. 2, no. 9, art. no. e117, Sep. 2006.
    • (2006) PLOS Comput. Biol. , vol.2 , Issue.9
    • Barrio, M.1    Burrage, K.2    Leier, A.3    Tian, T.4
  • 25
    • 34047136657 scopus 로고    scopus 로고
    • Exact stochastic simulation of coupled chemical reactions with delays
    • art. no. 124108, Mar
    • X. Cai, "Exact stochastic simulation of coupled chemical reactions with delays", J. Chem. Phys., vol. 126, art. no. 124108, Mar. 2007.
    • (2007) J. Chem. Phys. , vol.126
    • Cai, X.1
  • 26
    • 0036957459 scopus 로고    scopus 로고
    • Determinnstic versus stochastic models for circadian rhythms
    • D. Gonze, J. Halloy, and A. Goldbeter, "Determinnstic versus stochastic models for circadian rhythms", J. Biol. Phys., vol. 28, no. 4, pp. 637-653, 2002.
    • (2002) J. Biol. Phys. , vol.28 , Issue.4 , pp. 637-653
    • Gonze, D.1    Halloy, J.2    Goldbeter, A.3
  • 28
    • 80053088982 scopus 로고    scopus 로고
    • Synchronized switching induced by colored noise in the genetic toggle switch systems coupled by quorum sensing mechanism
    • in press, Yantai, China, Jul
    • P. Wang, J. Lü, and M. J. Ogorzalek, "Synchronized switching induced by colored noise in the genetic toggle switch systems coupled by quorum sensing mechanism", Proc. of the 30th Chin. Contr. Conf., in press, Yantai, China, Jul. 2011.
    • (2011) Proc. of the 30th Chin. Contr. Conf.
    • Wang, P.1    Lü, J.2    Ogorzalek, M.J.3
  • 29
    • 80054850445 scopus 로고    scopus 로고
    • Global relative parameter sensitivities of the feed-forward loops in genetic networks
    • in press
    • P. Wang, J. Lü, and M. J. Ogorzalek, "Global relative parameter sensitivities of the feed-forward loops in genetic networks", Neurocomput., in press, 2011.
    • (2011) Neurocomput.
    • Wang, P.1    Lü, J.2    Ogorzalek, M.J.3
  • 30
    • 77953891646 scopus 로고    scopus 로고
    • SnapShot: Key numbers in biology
    • Jun
    • U. Moran, R. Phillips, and R. Milo, "SnapShot: key numbers in biology", Cell, vol. 141, pp. 1-2, Jun. 2010.
    • (2010) Cell , vol.141 , pp. 1-2
    • Moran, U.1    Phillips, R.2    Milo, R.3
  • 31
    • 80054859174 scopus 로고    scopus 로고
    • http://oscill8.sourceforge.net/.
  • 32
    • 0004033107 scopus 로고    scopus 로고
    • DDE-BIFTOOL v. 2.00: A Matlab package for numerical bifurcation analysis of delay differential equations, Report TW 330
    • K. U. Leuven, Leuven, Belgium
    • K. Engelborghs, T. Luzyanina, and G. Samaey, "DDE-BIFTOOL v. 2.00: A Matlab package for numerical bifurcation analysis of delay differential equations, Report TW 330", Department of Computer Science, K. U. Leuven, Leuven, Belgium, 2001. (http://www.cs.kuleuven. be/twr/research/software/delay/ ddebiftool.shtml)
    • (2001) Department of Computer Science
    • Engelborghs, K.1    Luzyanina, T.2    Samaey, G.3
  • 33
    • 0011924251 scopus 로고    scopus 로고
    • Simulating, analyzing, and animating dynamical systems: A guide to XPPAUT for researchers and students
    • B. Ermentrout, Simulating, analyzing, and animating dynamical systems: a guide to XPPAUT for researchers and students, SIAM: Software Environments Tools, 2002.
    • (2002) SIAM: Software Environments Tools
    • Ermentrout, B.1
  • 37
    • 33645293152 scopus 로고    scopus 로고
    • An excitable gene regulatory circuit induces transient cellular differentiation
    • Mar
    • G. M. Süel, J. Garcia-Ojalvo, L. M. Liberman, and M. B. Elowitz, "An excitable gene regulatory circuit induces transient cellular differentiation", Nature, vol. 440, pp. 545-550, Mar. 2006.
    • (2006) Nature , vol.440 , pp. 545-550
    • Süel, G.M.1    Garcia-Ojalvo, J.2    Liberman, L.M.3    Elowitz, M.B.4
  • 39
    • 77954477987 scopus 로고    scopus 로고
    • Switchable genetic oscillator operating in quasi-stable mode
    • Jul
    • N. Strelkowa and M. Barahona, "Switchable genetic oscillator operating in quasi-stable mode", J. R. Soc. Interface, vol. 7, no. 48, pp. 1071-1082, Jul. 2010.
    • (2010) J. R. Soc. Interface , vol.7 , Issue.48 , pp. 1071-1082
    • Strelkowa, N.1    Barahona, M.2
  • 40
    • 70649104601 scopus 로고    scopus 로고
    • Coupling oscillations and switches in genetic networks
    • Jan
    • D. Gonze, "Coupling oscillations and switches in genetic networks", Biosystems, vol. 99, no. 1, pp. 60-69, Jan. 2010.
    • (2010) Biosystems , vol.99 , Issue.1 , pp. 60-69
    • Gonze, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.