Tracing the evolution of the mitochondrial protein import machinery

Computational Biology and Chemistry

Volumn 35, Issue 6, 2011, Pages 336-340

  Liu, Zhen ^a   Li, Xiao ^a   Zhao, Peihu ^a   Gui, Junhong ^a   Zheng, Wen ^a   Zhang, Yizheng ^a  

^a SICHUAN UNIVERSITY   (China)

Author keywords

Homology; Mitochondria; Molecular evolution; Protein import

Indexed keywords

CYTOSOLS; ENDOSYMBIOSIS; EUKARYOTIC LINEAGES; EVOLUTIONARY HISTORY; HOMOLOGY; HOMOLOGY SEARCH; HYDROGENOSOMES; MACHINERY COMPONENTS; MITOCHONDRIAL PROTEIN; MODULAR DESIGNS; MOLECULAR EVOLUTION; PROTEIN IMPORT;

MACHINE DESIGN; MACHINERY; MOLECULAR BIOLOGY; PROTEINS;

MITOCHONDRIA;

MITOCHONDRIAL PROTEIN;

ARTICLE; CELL ORGANELLE; CYTOLOGY; METABOLISM; MITOCHONDRION; PROTEIN SUBUNIT; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE;

MITOCHONDRIA; MITOCHONDRIAL PROTEINS; ORGANELLES; PROTEIN SUBUNITS; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE;

BACTERIA (MICROORGANISMS); EUKARYOTA; PROKARYOTA;

EID: 80054856537     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2011.10.005     Document Type: Article

References (24)

1. U. Ahting, T. Waizenegger, W. Neupert, and D. Rapaport Signal-anchored proteins follow a unique insertion pathway into the outer membrane of mitochondria J. Biol. Chem. 280 2005 48 53 (Pubitemid 40164963)
2. S.F. Altschul, and E.V. Koonin Iterated profile searches with PSI-BLAST - a tool for discovery in protein databases Trends Biochem. Sci. 23 1998 444 447 (Pubitemid 28540746)
3. S.L. Baldauf, A.J. Roger, I. Wenk-Siefert, and W.F. Doolittle A kingdom-level phylogeny of eukaryotes based on combined protein data Science 290 2000 972 977
4. N. Bolender, A. Sickmann, R. Wagner, C. Meisinger, and N. Pfanner Multiple pathways for sorting mitochondrial precursor proteins EMBO Rep. 9 2008 42 49
5. P.R. D'Silva, B. Schilke, M. Hayashi, and E.A. Craig Interaction of the J-protein heterodimer Pam18/Pam16 of the mitochondrial import motor with the translocon of the inner membrane Mol. Biol. Cell 19 2008 424 432 (Pubitemid 351186165)
6. J. Dukanovic, K.S. Dimmer, N. Bonnefoy, K. Krumpe, and D. Rapaport Genetic and functional interactions between the mitochondrial outer membrane proteins Tom6 and Sam37 Mol. Cell. Biol. 29 2009 5975 5988
7. S.R. Eddy, G. Mitchison, and R. Durbin Maximum discrimination hidden Markov models of sequence consensus J. Comput. Biol. 2 1995 9 23
8. R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797 (Pubitemid 38832724)
9. T. Gabaldon, D. Rainey, and M.A. Huynen Tracing the evolution of a large protein complex in the eukaryotes, NADH: ubiquinone oxidoreductase (Complex I) J. Mol. Biol. 348 2005 857 870 (Pubitemid 40544387)
10. K. Gabriel, S.K. Buchanan, and T. Lithgow The alpha and the beta: protein translocation across mitochondrial and plastid outer membranes Trends Biochem. Sci. 26 2001 36 40 (Pubitemid 32124708)
11. I. Gentle, K. Gabriel, P. Beech, R. Waller, and T. Lithgow The Omp85 family of proteins is essential for outer membrane biogenesis in mitochondria and bacteria J. Cell Biol. 164 2004 19 24 (Pubitemid 38082453)
12. M.W. Gray, G. Burger, and B.F. Lang Mitochondrial evolution Science 283 1999 1476 1481
13. J. Gross, and D. Bhattacharya Mitochondrial and plastid evolution in eukaryotes: an outsiders' perspective Nat. Rev. Genet. 10 2009 495 550
14. J.H. Hackstein, A. Akhmanova, F. Voncken, A. van Hoek, T. van Alen, B. Boxma, S.Y. Moon-van der Staay, G. van der Staay, J. Leunissen, M. Huynen, J. Rosenberg, and M. Veenhuis Hydrogenosomes: convergent adaptations of mitochondria to anaerobic environments Zoology (Jeena) 104 2001 290 302
15. S.B. Hedges The origin and evolution of model organisms Nat. Rev. Genet. 3 2002 838 849 (Pubitemid 35303516)
16. T. Lithgow, and A. Schneider Evolution of macromolecular import pathways in mitochondria, hydrogenosomes and mitosomes Philos. Trans. R. Soc. Lond. B: Biol. Sci. 365 2010 799 817
17. D. Milenkovic, V. Kozjak, N. Wiedemann, C. Lohaus, H.E. Meyer, B. Guiard, N. Pfanner, and C. Meisinger 2004. Sam35 of the mitochondrial protein sorting and assembly machinery is a peripheral outer membrane protein essential for cell viability J. Biol. Chem. 279 2004 22781 22785 (Pubitemid 38679479)
18. D. Mokranjac, G. Bourenkov, K. Hell, W. Neupert, and M. Groll Structure and function of Tim14 and Tim16, the J and J-like components of the mitochondrial protein import motor EMBO J. 25 2006 4675 4685 (Pubitemid 44498139)
19. A.J. Perry, J.M. Hulett, V.A. Likic, T. Lithgow, and P.R. Gooley Convergent evolution of receptors for protein import into mitochondria Curr. Biol. 16 2006 221 229 (Pubitemid 43190221)
20. N. Pfanner, and A. Geissler Versatility of the mitochondrial protein import machinery Nat. Rev. Mol. Cell Biol. 2 2001 339 349 (Pubitemid 33674046)
21. J. Rassow, P.J. Dekker, S. van Wilpe, M. Meijer, and J. Soll The preprotein translocase of the mitochondrial inner membrane: function and evolution J. Mol. Biol. 286 1999 105 120 (Pubitemid 29078399)
22. S. Schmidt, A. Strub, K. Rottgers, N. Zufall, and W. Voos The two mitochondrial heat shock proteins 70, Ssc1 and Ssq1, compete for the cochaperone Mge1 J. Mol. Biol. 313 2001 13 26 (Pubitemid 33001162)
23. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680 (Pubitemid 24354800)
24. M. Van Der Giezen, and J. Tovar Degenerate mitochondria EMBO Rep. 6 2005 525 530 (Pubitemid 40973960)