Characterization of rotavirus and norovirus strains: A 6-year study (2004-2009)

Jornal de Pediatria

Volumn 87, Issue 5, 2011, Pages 445-449

  Cilli, Audrey ^a   Luchs, Adriana ^a   Morillo, Simone G ^a   Costa, Fernanda F ^a   Carmona, Rita De Cássia C ^a   Timenetsky, Maria Do Carmo Sampaio Tavares ^a  

^a INSTITUTO ADOLFO LUTZ   (Brazil)

Author keywords

Brazil; Children; Gastroenteritis; Norovirus; Rotavirus

Indexed keywords

ARTICLE; BRAZIL; CALICIVIRUS INFECTION; CHILD; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; FECES ANALYSIS; GASTROENTERITIS; GENE SEQUENCE; GENOTYPE; HUMAN; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRESCHOOL CHILD; RETROSPECTIVE STUDY; ROTAVIRUS; ROTAVIRUS INFECTION; VIRUS CHARACTERIZATION; VIRUS GENE; VIRUS STRAIN;

BRAZIL; CALICIVIRIDAE INFECTIONS; CHILD, PRESCHOOL; FECES; GASTROENTERITIS; GENOTYPE; HOSPITALIZATION; HUMANS; NOROVIRUS; RETROSPECTIVE STUDIES; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, RNA; TIME FACTORS;

EID: 80054851556     PISSN: 00217557     EISSN: None     Source Type: Journal    
DOI: 10.2223/JPED.2122     Document Type: Article

References (35)

1. Vernacchio L, Vezina RM, Mitchell AA, Lesko SM, Plaut AG, Acheson DW. Diarrhea in American and young children in the community setting: incidence, clinical presentation and microbiology. Pediatr Infect Dis J.2006;25:2-7. (Pubitemid 43361467)
2. Xavier MP, Oliveira SA, Ferreira MS, Victoria M, Miranda V, Silva MF, et al. Detection of calicivirus associated with acute infantile gastroenteritis in Salvador, an urban center in Northeast Brazil. Braz J Med Biol Res. 2009;42:438-44.
3. Parashar UD, Gibson CJ, Bresse JS, Glass RI. Rotavirus and severe childhood diarrhea. Emerg Infect Dis. 2006;12:304-6.
4. Afonso A, Antunes H. Infecção por rotavirus: implicações e custos. Acta Pediatr Port. 2007;38:138-43.
5. Sartori AM, Valentim J, de Soárez PC, Novaes HM. Rotavirus morbidity and mortality in children in Brazil. Rev Panam Salud Publica. 2008;23:92-100.
6. Gurgel RQ, Correia JB, Cuevas LE. Effect of rotavirus vaccination on circulating virus strains. Lancet. 2008;371:301-2. (Pubitemid 351754783)
7. Araujo EC, Clemens SA, Oliveira CS, Justino MC, Rubio P, Gabbay YB, et al. Safety, immunogenicity, and protective efficacy of two doses of RIX4414 live attenuated human rotavirus vaccine in healthy infants. J Pediatr (Rio J). 2007;83:217-24. (Pubitemid 46883821)
8. Nakagomi T, Cuervas LE, Gurgel RG, Elrokhsi SH, Belkhir YA, Abugalia M, et al. Apparent extinction of non-G2 rotavirus strains from circulation in Recife, Brazil, after the introduction of rotavirus vaccine. Arch Virol. 2008;153:591-3.
9. Morillo SG, Luchs A, Cilli A, Costa FF, Carmona Rde C, Timenetsky Mdo C. Characterization of rotavirus strains from day care centers: pre- and post-rotavirus vaccine era. J Pediatr (Rio J). 2010;86:155-8.
10. Bernstein DI. RIX4414 (Rotarix): a live attenuated human rotavirus vaccine. J Pediatr (Rio J). 2007;83:193-5. (Pubitemid 46883817)
11. Kirkwood CD, Bishop RF. Molecular detection of human Calicivirus in young children hospitalized with acute gastroenteritis in Melbourne, Australia, during 1999. J Clin Microbiol. 2001;39:2722-4. (Pubitemid 32606270)
12. Morillo SG, Cilli A, Carmona R de C, Timenetsky, M do C. Identification and molecular characterization of norovirus in São Paulo State, Brazil. Braz J Microbiol. 2008;39:619-22.
13. Morillo SG, Luchs A, Cilli A, Ribeiro CD, Calux SJ, Carmona R de C, Timenetsky M do C. Norovirus 3rd Generation kit: an improvement for rapid diagnosis of sporadic gastroenteritis cases and valuable for outbreak detection. J Virol Methods. 2011;173:13-6.
14. Oh DY, Gaedicke G, Schreier E. Viral agents of acute gastroenteritis in German children: prevalence and molecular diversity. J Med Virol. 2003;71:82-93. (Pubitemid 37121917)
15. Nakanishi K, Tsugawa T, Honma S, Nakata S, Tatsumi M, Yoto Y, et al. Detection of enteric viruses in rectal swabs from children with acute gastroenteritis attending the pediatric outpatient clinics in Sapporo, Japan. J Clin Virol. 2009;46:94-7.
16. Morillo SG, Luchs A, Cilli A, Ribeiro CD, Calux SJ, Carmona Rde C, et al. Large gastroenteritis outbreak due to norovirus GII in São Paulo, Brazil, summer 2010. Rev Inst Med Trop São Paulo. 2011;53:119-20.
17. Junquera CG, de Baranda CS, Mialdea OG, Serrano EB, Sánchez- Fauquier A. Prevalence and clinical characteristics of norovirus gastroenteritis among hospitalized children in Spain. Pediatr Infect Dis J. 2009;28:604-7.
18. Pereira HG, Azevedo RS, Leite JP, Barth OM, Sutmoller F, de Farias V, et al. Comparison of polyacrylamide gel electrophoresis (PAGE), immuno-electron microscopy (IEM) and enzyme immunoassay (EIA) for the rapid diagnosis of rotavirus infection in children. Mem Inst Oswaldo Cruz. 1983;78:483-90.
19. Timenetsky Mdo C, Gouvea V, Santos N, Carmona RC, Hoshino Y. A novel human rotavirus serotype with dual G5-G11 specificity. J Gen Virol. 1997;78:1373-8. (Pubitemid 27281337)
20. Gouvea V, Allen JR, Glass RI, Fang ZY, Bremont M, Cohen J, et al. Detection of group B and C rotaviruses by polymerase chain reaction. J Clin Microbiol. 1991;29:519-23.
21. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, et al. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol. 1992;30:1365-73.
22. Carvalho-Costa FA, Assis RM, Fialho AM, Bóia MN, Alves DP, Martins CM, et al. Detection and molecular characterization of group A rotavirus from hospitalized children in Rio de Janeiro, Brazil, 2004. Mem Inst Oswaldo Cruz. 2006;101:291-4. (Pubitemid 43962016)
23. Bányai K, Gentsch JR, Schipp R, Jakab F, Meleg E, Mihály I, et al. Dominating prevalence of P[8], G1 and P[8], G9 rotavirus strains among children admitted to hospital between 2000 and 2003 in Budapest, Hungary. J Med Virol. 2005;76:414-23. (Pubitemid 40770900)
24. Carmona RC, Timenetsky Mdo C, Morillo SG, Richtzenhain LJ. Human rotavirus serotype G9, São Paulo, Brazil, 1996-2003. Emerg Infect Dis. 2006;12:963-8. (Pubitemid 43848419)
25. Nunes AA, de Mello LM, Parrode RN, Bittar JP, Domingues AL. Prevalence of rotavirus in acute diarrhea and its association with clinical signs and symptoms. J Trop Pediatric. 2010;56:212-3.
26. Timenetsky M do C, Carmona R de C, Luchs A, Russo DH, Morillo S, Cilli A, et al. Prevalence of rotavirus genotype G2P4 in Brazil after the rotavirus vaccine introduction. American Society for Virology. 27th Annual Meeting. Cornell University. New York: Ithaca; 2008, 263 p.
27. Antunes H, Afonso A, Iturriza M, Martinho I, Ribeiro C, Rocha S, et al. G2P[4] the most prevalent rotavirus genotype in 2007 winter season in an European non-vaccinated population. J Clin Virol. 2009;45:76-8.
28. Desselberger U, Wolleswinkel-van den Bosch J, Mrukowicz J, Rodrigo C, Giaquinto C, Vesikari T. Rotavirus types in Europe and their significance for vaccination. Pediatr Infect Dis J. 2006;25: S30-41. (Pubitemid 43884463)
29. Ferrera A, Quan D, Espinoza F. Increased prevalence of genotype G2P(4) among children with rotavirus-associated gastroenteritis in Honduras. 17th European Congress of Clinical Microbiology and Infectious Diseases ICC; 2007 Mar 31-Apr 04; Munich. Hoboken (NJ): Wiley-Blackwell; 2007.
30. CVE [Internet]. São Paulo: Centro de Vigilância Epidemiológica. Available from: http://www.cve.saude.sp.gov.br/htm/ hidrica/hidri-estat.html. Access: 20/03/2011.
31. Castilho JG, Munford V, Resque HR, Fagundes-Neto U, Vinjé J, Rácz ML. Genetic diversity of norovirus among children with gastroenteritis in São Paulo State, Brazil. J Clin Microbiol. 2006;44:3947-53. (Pubitemid 44737234)
32. Borges AM, Teixeira JM, Costa PS, Giugliano LG, Fiaccadori FS, Franco Rde C, et al. Detection of calicivirus from fecal samples from children with acute gastroenteritis in the West Central region of Brazil. Mem Inst Oswaldo Cruz. 2006;101:721-4. (Pubitemid 44800150)
33. Victoria M, Carvalho-Costa FA, Heinemann MB, Leite JP, Miagostovich M. Prevalence and molecular epidemiology of noroviruses in hospitalized children with acute gastroenteritis in Rio de Janeiro, Brazil, 2004. Pediatr Infect Dis J. 2007;26:602-6. (Pubitemid 47014161)
34. Soares CC, Santos N, Beard RS, Albuquerque MC, Maranhão AG, Rocha LN, et al. Norovirus detection and genotyping for children with gastroenteritis, Brazil. Emerg Infect Dis. 2007;13:1244-6. (Pubitemid 47359176)
35. Lanzieri TM, Costa I, Shafi FA, Cunha MH, Ortega-Barria E, Linhares AC, et al. Trends in hospitalizations from all-cause gastroenteritis in children younger than 5 years of age in Brazil before and after human rotavirus vaccine introduction, 1998-2007. Pediatr Infect Dis J. 2010;29:673-5.