Prevalence and molecular epidemiology of noroviruses in hospitalized children with acute gastroenteritis in Rio de Janeiro, Brazil, 2004

Pediatric Infectious Disease Journal

Volumn 26, Issue 7, 2007, Pages 602-606

  Victoria, Matías ^a,b   Carvalho Costa, Filipe Aníbal ^a   Heinemann, Marcos Bryan ^a   Leite, José Paulo ^a   Miagostovich, Marize ^a  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b Insitituto Oswaldo Cruz   (Brazil)

Author keywords

Gastroenteritis; Genotypes; Inpatients; Noroviruses

Indexed keywords

ACUTE GASTROENTERITIS; ARTICLE; AUTUMN; BRAZIL; CONTROLLED STUDY; COUGHING; DEHYDRATION; DISEASE SEVERITY; FECES ANALYSIS; FEVER; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; HOSPITAL INFECTION; HUMAN; INFANT; INFANTILE DIARRHEA; INFECTION PREVENTION; INFECTIOUS DIARRHEA; MAJOR CLINICAL STUDY; MIXED INFECTION; MOLECULAR EPIDEMIOLOGY; MOLECULAR PHYLOGENY; NEWBORN; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; PRESCHOOL CHILD; PRIORITY JOURNAL; ROTAVIRUS; SEASONAL VARIATION; SPRING; STRUCTURAL GENE; VIRUS CAPSID; VIRUS GENE; VIRUS GENOME; VIRUS INFECTION; VIRUS RECOMBINANT; VIRUS STRAIN; VIRUS TRANSMISSION; VOMITING;

BRAZIL; CALICIVIRIDAE INFECTIONS; CHILD, PRESCHOOL; EPIDEMIOLOGY, MOLECULAR; FECES; GASTROENTERITIS; HOSPITALIZATION; HUMANS; INFANT; NOROVIRUS; PREVALENCE; SEASONS; TIME FACTORS;

EID: 34347340668     PISSN: 08913668     EISSN: None     Source Type: Journal    
DOI: 10.1097/INF.0b013e3180618bea     Document Type: Article

References (42)

1. Bryce J, Boschi-Pinto C, Shibuya K, Black RE. WHO estimates of the causes of death in children. Lancet. 2005;365:1147-1152.
2. Glass RI, Noel J, Ando T, et al. The epidemiology of enteric caliciviruses from humans: a reassessment using new diagnostics. J Infect Dis. 2000;181:S254-S261.
3. Simpson R, Aliyu S, Iturriza-Gomara M, Desselberger U, Gray J. Infantile viral gastroenteritis: on the way to closing the diagnostic gap. J Med Virol. 2003;70:258-262.
4. Blanton LH, Adams SM, Beard RS, et al. Molecular and epidemiologic trends of caliciviruses associated with outbreaks of acute gastroenteritis in the United States, 2000-2004. J Infect Dis. 2006;193:413-421.
5. Prasad BV, Hardy ME, Dokland T, Bella J, Rossmann MG, Estes MK. X-ray crystallographic structure of the Norwalk virus capsid. Science. 1999;286:287-290.
6. Hardy ME. Norovirus protein structure and function. FEMS Microbiol Lett. 2005;253:1-8.
7. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS. Norovirus classification and proposed strain nomenclature. Virology. 2006;346:312-323.
8. Carvalho-Costa FA, Assis RM, Fialho AM, Bóia MN, Alves DPD, Martins CMM, Leite JPG. Detection and molecular characterization of group A rotavirus from hospitalized children in Rio de Janeiro, Brazil, 2004. Mem Inst Oswaldo Cruz. 2006;101:291-294.
9. Victoria M, Carvalho-Costa FA, Heinemann MB, Leite JPG, Miagostovich MP. Genotypes and molecular epidemiology of human astroviruses in hospitalized children with acute gastroenteritis in Rio de Janeiro, Brazil. J Med Virol. In press.
10. Boom R, Sol CJ, Salimans MM, Jansen CL, Wertheim-van Dillen PM, van der Noordaa J. Rapid and simple method for purification of nucleic acids. J Clin Microbiol. 1990;28:495-503.
11. Cardoso D, Fiaccadori FS, Souza M, Martins RM, Leite JP. Detection and genotyping of astroviruses from children with acute gastroenteritis from Goiania, Goias, Brazil. Med Sci Monit. 2002;8:CR624-CR628.
12. Beuret C, Kohler D, Baumgartner A, Lüthi T. Norwalk-like virus sequences in mineral waters: one-year monitoring of three brands. Appl Environ Microbiol. 2002;68:1925-1931.
13. Vinjé J, Hamidjaja RA, Sobsey MD. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Methods. 2004;116:109-117.
14. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser. 1999;41:95-98.
15. Kumar S, Tamura K, Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform. 2004;5:150-163.
16. Estes MK, Prasad BV, Atmar RL. Noroviruses everywhere: has something changed? Curr Opin Infect Dis. 2006;19:467-474.
17. Pang XL, Honma S, Nakata S, Vesikari T. Human caliciviruses in acute gastroenteritis of young children in the community. J Infect Dis. 2000;181:S288-S294.
18. Lau CS, Wong DA, Tong LK, et al. High rate and changing molecular epidemiology pattern of norovirus infections in sporadic cases and outbreaks of gastroenteritis in Hong Kong. J Med Virol. 2004;73:113-117.
19. Waters A, Coughlan S, Dunford L, Hall WW. Molecular epidemiology of Norovirus strains circulating in Ireland from 2003 to 2004. Epidemiol Infect. 2006;134:917-925.
20. Castilho JG, Munford V, Resque HR, Fagundes-Neto U, Vinjé J, Racz ML. Genetic diversity of norovirus among children with gastroenteritis in Sao Paulo state, Brazil. J Clin Microbiol. 2006;44:3947-3953.
21. Borges AMT, Teixeira JMS, da Costa PSS, et al. Detection of calicivirus from fecal samples from children with acute gastroenteritis in the West Central region of Brazil. Mem Inst Oswaldo Cruz. 2006;101:721-724.
22. Oh DY, Gaedicke G, Schreier E. Viral agents of acute gastroenteritis in German children: prevalence and molecular diversity. J Med Virol. 2003;71:82-93.
23. Froggatt PC, Barry Vipond I, Ashley CR, Lambden PR, Clarke IN, Caul EO. Surveillance of norovirus infection in a study of sporadic childhood gastroenteritis in South West England and South Wales, during one winter season (1999-2000). J Med Virol. 2004;72:307-311.
24. Dove W, Cunliffe NA, Gondwe JS, et al. Detection and characterization of human caliciviruses in hospitalized children with acute gastroenteritis in Blantyre, Malawi. J Med Virol. 2005;77:522-527.
25. Rockx B, De Wit M, Vennema H, et al. Natural history of human calicivirus infection: a prospective cohort study. Clin Infect Dis. 2002;35:246-253.
26. Liu C, Grillner L, Jonsson K, et al. Identification of viral agents associated with diarrhea in young children during a winter season in Beijing, China. J Clin Virol. 2006;35:69-72.
27. Phan TG, Okame M, Nguyen TA, et al. Human astrovirus, norovirus (GI, GII), and sapovirus infections in Pakistani children with diarrhea. J Med Virol. 2004;73:256-261.
28. Gabbay YB, Luz CR, Costa IV, et al. Prevalence and genetic diversity of astroviruses in children with and without diarrhea in Sao Luis, Maranhao, Brazil. Mem Inst Oswaldo Cruz. 2005;100:709-714.
29. Gaggero A, O'Ryan M, Noel JS, et al. Prevalence of astrovirus infection among Chilean children with acute gastroenteritis. J Clin Microbiol. 1998;36:3691-3693.
30. Kirkwood CD, Clark R, Bogdanovic-Sakran N, Bishop RF. A 5-year study of the prevalence and genetic diversity of human caliciviruses associated with sporadic cases of acute gastroenteritis in young children admitted to hospital in Melbourne, Australia (1998-2002). J Med Virol. 2005;77:96-101.
31. Marshall JA, Hellard ME, Sinclair MI, et al. Incidence and characteristics of endemic Norwalk-like virus-associated gastroenteritis. J Med Virol. 2003;69:568-578.
32. Parashar UD, Li JF, Cama R, et al. Human caliciviruses as a cause of severe gastroenteritis in Peruvian children. J Infect Dis. 2004;190:1088-1092.
33. Bon F, Ambert-Balay K, Giraudon H, et al. Molecular epidemiology of caliciviruses detected in sporadic and outbreak cases of gastroenteritis in France from December 1998 to February 2004. J Clin Microbiol. 2005;43:4659-4664.
34. Fretz R, Herrmann L, Christen A, et al. Frequency of Norovirus in stool samples from patients with gastrointestinal symptoms in Switzerland. Eur J Clin Microbiol Infect Dis. 2005;24:214-216.
35. Hansman GS, Doan LT, Kguyen TA, et al. Detection of norovirus and sapovirus infection among children with gastroenteritis in Ho Chi Minh City, Vietnam. Arch Virol. 2004;149:1673-1688.
36. Fankhauser RL, Monroe SS, Noel JS, et al. Epidemiologic and molecular trends of "Norwalk-like viruses" associated with outbreaks of gastroenteritis in the United States. J Infect Dis. 2002;186:1-7.
37. Martinez N, Espul C, Cuello H, et al. Sequence diversity of human caliciviruses recovered from children with diarrhea in Mendoza, Argentina, 1995-1998. J Med Virol. 2002;67:289-298.
38. Gallimore CI, Barreiros MA, Brown DW, Nascimento JP, Leite JP. Noroviruses associated with acute gastroenteritis in a children's day care facility in Rio de Janeiro, Brazil. Braz J Med Biol Res. 2004;37:321-326.
39. Lindell AT, Grillner L, Svensson L, Wirgart BZ. Molecular epidemiology of norovirus infections in Stockholm, Sweden, during the years 2000 to 2003: association of the GGIIb genetic cluster with infection in children. J Clin Microbiol. 2005;43:1086-1092.
40. Zintz C, Bok K, Parada E, et al. Prevalence and genetic characterization of caliciviruses among children hospitalized for acute gastroenteritis in the United States. Infect Genet Evol. 2005;5:281-290.
41. Ike AC, Brockmann SO, Hartelt K, Marschang RE, Contzen M, Oehme RM. Molecular epidemiology of norovirus in outbreaks of gastroenteritis in southwest Germany from 2001 to 2004. J Clin Microbiol. 2006;44:1262-1267.
42. Vidal R, Roessler P, Solari V, et al. Novel recombinant norovirus causing outbreaks of gastroenteritis in Santiago, Chile. J Clin Microbiol. 2006;44:2271-2275.