N-terminal PDZ-like domain of chromatin organizer SATB1 contributes towards its function as transcription regulator

Journal of Biosciences

Volumn 36, Issue 3, 2011, Pages 461-469

  Notani, Dimple ^a   Ramanujam, Praveena L ^a   Kumar, P Pavan ^a   Gottimukkala, Kamalvishnu P ^a   Kumar Sinha, Chandan ^b,d   Galande, Sanjeev ^a,c  

^a NATIONAL CENTRE FOR CELL SCIENCE   (India)

^b CANCER RESEARCH INSTITUTE   (India)

^c INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH   (India)

^d UNIVERSITY OF MICHIGAN HEALTH SYSTEM   (United States)

Author keywords

Chromatin organization; dominant negative; gene regulation; transcription

Indexed keywords

BINDING PROTEIN; SPECIAL AT RICH DNA BINDING PROTEIN 1; UNCLASSIFIED DRUG;

CELL ORGANELLE; DNA; GENETIC ANALYSIS; GENETIC STRUCTURE; PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; BAG4 GENE; BCL2 GENE; BINDING SITE; CELL STRAIN HEK293; CHUK GENE; CONTROLLED STUDY; COX5A GENE; EHZF GENE; FN GENE; GADD45A GENE; GENE; GENE CONTROL; GENE EXPRESSION PROFILING; HUMAN; HUMAN CELL; NAP1L1 GENE; PDZ DOMAIN; PPMA1 GENE; PROTEIN DNA BINDING; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INTERACTION; TUBB1 GENE; UPREGULATION;

GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENES, REGULATOR; GENES, REPORTER; HEK293 CELLS; HUMANS; MATRIX ATTACHMENT REGION BINDING PROTEINS; PDZ DOMAINS;

EID: 80054828068     PISSN: 02505991     EISSN: 09737138     Source Type: Journal    
DOI: 10.1007/s12038-011-9091-4     Document Type: Article

References (17)

1. JD Alvarez DH Yasui H Niida T Joh DY Loh T Kohwi-Shigematsu 2000 MAR-binding protein SATB1 orchestrates temporal & spatial expression of multiple genes during T-cell development Genes Dev 14 521 535 10716941 1:CAS:528:DC%2BD3cXitFWrsrw%3D (Pubitemid 30159772)
2. LA Dickinson CD Dickinson T Kohwi-Shigematsu 1997 An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region J. Biol. Chem. 272 11463 11470 9111059 10.1074/jbc.272.17.11463 1:CAS:528:DyaK2sXjtVamu7Y%3D (Pubitemid 27184155)
3. AS Fanning JM Anderson 1996 Protein-protein interactions: PDZ domain networks Curr. Biol. 6 1385 1388 8939589 10.1016/S0960-9822(96)00737-3 1:CAS:528:DyaK28XntVKisb0%3D (Pubitemid 27012231)
4. S Galande LA Dickinson SI Mian M Sikorska T Kohwi-Shigematsu 2001 SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization causing detachment from chromatin early in T cell apoptosis Mol. Cell. Biol. 21 5591 5604 11463840 10.1128/MCB.21.16.5591-5604.2001 1:CAS:528:DC%2BD3MXlslOjur8%3D (Pubitemid 32702462)
5. SN Gomperts 1996 Clustering membrane proteins: it's all coming together with the PSD-95/SAP90 protein family Cell 84 659 662 8625403 10.1016/S0092-8674(00)81043-0 1:CAS:528:DyaK28Xhs1Cgurg%3D
6. H-J Han J Russo Y Kohwi T Kohwi-Shigematsu 2008 SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis Nature (London) 452 187 193 10.1038/nature06781 1:CAS:528:DC%2BD1cXjt1Gnurg%3D (Pubitemid 351380252)
7. BZ Harris WA Lim 2001 Mechanism and role of PDZ domains in signaling complex assembly J. Cell Sci 114 3219 3231 11591811 1:CAS:528: DC%2BD3MXns1Gns74%3D (Pubitemid 32998900)
8. E Kim M Niethammer A Rothschild N Jan M Sheng 1995 Clustering of Shaker-type K∈+∈channels by interaction with a family of membrane-associated guanylate kinases Nature (London) 378 85 88 10.1038/378085a0 1:CAS:528:DyaK2MXptVyqsrc%3D
9. PP Kumar PK Purbey DS Ravi D Mitra S Galande 2005 Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells Mol. Cell Biol. 25 1620 1633 15713622 10.1128/MCB.25.5.1620-1633. 2005 (Pubitemid 40280132)
10. PP Kumar PK Purbey CK Sinha D Notani A Limaye RS Jayani S Galande 2006 Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo Mol. Cell. 22 231 243 10.1016/j.molcel.2006.03.010
11. Y Nakayama IS Mian T Kohwi-Shigematsu T Ogawa 2005 A nuclear targeting determinant for SATB1, a genome organizer in the T cell lineage Cell Cycle 4 1099 1106 15970696 10.4161/cc.4.8.1862 1:CAS:528:DC%2BD28Xislyhuro%3D (Pubitemid 41365370)
12. (H)2 differentiation in Wnt-dependent manner PLoS Biol 8 e1000296 20126258 10.1371/journal.pbio.1000296
13. PK Purbey S Singh PP Kumar S Mehta KN Ganesh D Mitra S Galande 2008 PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high affinity DNA binding by SATB1 Nucleic Acids Res 36 2017 2122 10.1093/nar/gkm1151 (Pubitemid 351566987)
14. PK Purbey S Singh D Notani PP Kumar AS Limaye S Galande 2009 Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1 Mol. Cell Biol 29 1321 1337 19103759 10.1128/MCB.00822-08 1:CAS:528:DC%2BD1MXitlylsrs%3D
15. J Seo MM Lozano JP Dudley 2005 Nuclear matrix binding regulates SATB1-mediated transcriptional repression J. Biol. Chem. 280 24600 24609 15851481 10.1074/jbc.M414076200 1:CAS:528:DC%2BD2MXlsFyru7g%3D (Pubitemid 40934548)
16. M Van de Wetering I Oving V Muncan MT Pon Fong H Brantjes D van Leenen FC Holstege TR Brummelkamp R Agami H Clevers 2003 Specific inhibition of gene expression using a stably integrated, inducible small-interfering RNA vector EMBO Rep 4 609 615 12776180 10.1038/sj.embor.embor865 (Pubitemid 36939953)
17. D Yasui M Miyano S Cai P Varga-Weisz T Kohwi-Shigematsu 2002 SATB1 targets chromatin remodeling to regulate genes over long distances Nature (London) 419 641 645 10.1038/nature01084 1:CAS:528:DC%2BD38Xns1Ont74%3D