Occurrence of grapevine leafroll-associated virus complex in Napa Valley

PLoS ONE

Volumn 6, Issue 10, 2011, Pages

  Sharma, Abhineet M ^a   Wang, Jinbo ^a   Duffy, Siobain ^b   Zhang, Siming ^a   Wong, Michelle K ^a   Rashed, Arash ^c   Cooper, Monica L ^d   Daane, Kent M ^a   Almeida, Rodrigo P P ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b The State University of New Jersey   (United States)

^c TEXAS A AND M UNIVERSITY   (United States)

^d UNIVERSITY OF CALIFORNIA COOPERATIVE EXTENSION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLOSTEROVIRIDAE; COAT PROTEIN GENE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC SCREENING; GENETIC VARIABILITY; GRAPEVINE LEAFROLL ASSOCIATED VIRUS; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 1; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 2; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 3; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 4; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 5; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 9; GRAPEVINE LEAFROLL DISEASE; NONHUMAN; PHYLOGENY; PLANT DISEASE; PLANT GENE; PLANT VIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPECIES IDENTIFICATION; UNITED STATES; VINEYARD; VIRUS TYPING; CLASSIFICATION; ISOLATION AND PURIFICATION; RNA VIRUS; STATISTICAL MODEL; VIROLOGY; VITIS;

CLOSTEROVIRIDAE; GRAPEVINE LEAFROLL-ASSOCIATED VIRUS 1; GRAPEVINE LEAFROLL-ASSOCIATED VIRUS 3; HEXAPODA; VITIS;

CALIFORNIA; LIKELIHOOD FUNCTIONS; PHYLOGENY; RNA VIRUSES; VITIS;

EID: 80054791392     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0026227     Document Type: Article

References (29)

1. Martelli G, Agranovsky A, Bar-Joseph M, Boscia D, Candresse T, et al. (2002) The family Closteroviridae revised. Arch Virol 147: 2039-2044.
2. Hoefert LL, Gifford EM, (1967) Grapevine leafroll virus- history and anatomic effects. Hilgardia 38: 403-426.
3. Charles JG, Froud KJ, van den Brink R, Allan DJ, (2009) Mealybugs and the spread of grapevine leafroll-associated virus 3 (GLRaV-3) in a New Zealand vineyard. Australasian Plant Pathol 38: 576-583.
4. Fuchs M, Martinson TE, Loeb GM, Hoch HC, (2009) Survey of the three major leafroll disease-associated viruses in Finger Lakes vineyards in New York. Plant Dis 93: 395-401.
5. Habili N, Fazeli C, Ewart A, Hamilton R, Cirami R, et al. (1995) Natural spread and molecular analysis of grapevine leafroll-associated virus 3 in Australia. Plant Dis 85: 1418-1422.
6. Maliogka V, Dovas C, Katis N, (2008) Evolutionary relationships of virus species belonging to a distinct lineage within the Ampelovirus genus. Virus Res 135: 125-135.
7. Maree HJ, Freeborough MJ, Burger JT, (2008) Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5′UTR of 737 nucleotides. Arch Virol 153: 755-757.
8. Akbas B, Kunter B, Ilhan D, (2007) Occurrence and distribution of Grapevine leafroll-associated viruses 1, 2, 3 and 7 in Turkey. J Phytopathol 155: 122-124.
9. Mafoudhi N, Digiaro M, Dhouibi MH, (2008) Incidence and distribution of grapevine leafroll-associated viruses in Tunisian vineyards. J Phytopathol 156: 556-558.
10. Fiore N, Prodan S, Montealegre J, Aballay E, Pino AM, et al. (2008) Survey of grapevine viruses in Chile. J Plant Pathol 90: 125-130.
11. Over de Linden AJ, Chamberlain EE, (1970) Effect of grapevine leafroll virus on vine growth and fruit yield and quality. N Z J Agri Res 13: 689-698.
12. Bertazzon N, Borgo M, Vanin S, Angelini E, (2010) Genetic variability and pathological properties of Grapevine leafroll-associated virus 2 isolates. Eur J Plant Pathol 127: 185-197.
13. Tsai CW, Rowhani A, Golino DA, Daane KM, Almeida RPP, (2010) Mealybug transmission of grapevine leafroll viruses: An analysis of virus-vector specificity. Phytopathology 100: 830-834.
14. Cabaleiro C, Couceiro C, Pereira S, Cid M, Barrasa M, et al. (2008) Spatial analysis of epidemics of Grapevine leafroll associated virus-3. Eur J Plant Pathol 121: 121-130.
15. Pietersen G, (2007) Tackling the grapevine leafroll disease problem in South Africa. South Afric J Sc 103: II.
16. Golino DA, Weber E, Sim S, Rowhani A, (2008) Leafroll disease is spreading rapidly in a Napa Valley vineyard. Calif Agricult 62: 156-160.
17. Gribaudo I, Gambino G, Bertin S, Bosco D, Cotroneo A, et al. (2009) Monitoring the spread of viruses after vineyard replanting with heat-treated clones of Vitis vinifera 'Nebbiolo'. J Plant Pathol 91: 741-744.
18. Habili N, Nutter F, (1997) Temporal and spatial analysis of grapevine leafroll-associated virus 3 in Pinot Noir grapevines in Australia. Plant Dis 81: 625-628.
19. Osman F, Leutenegger C, Golino D, Rowhani A, (2007) Real-time RT-PCR (TaqMan) assays for the detection of Grapevine Leafroll associated viruses 1-5 and 9. J Virol Methods 141: 22-29.
20. Wang J, Sharma AM, Duffy S, Almeida RPP, (2011) Genetic diversity in the 3′ terminal 4.7-kb region of Grapevine leafroll-associated virus 3. Phytopathology 101: 445-450.
21. Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
22. Swofford DL, (2003) PAUP* Phylogenetic analysis using parsimony (*and other methods). Version 4.0b8. Sinauer Associates, Sunderland, Massachusetts.
23. Posada D, Crandall KA, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
24. Engel EA, Girardi C, Escobar PF, Arredondo V, Dominguez C, et al. (2008) Genome analysis and detection of a Chilean isolate of Grapevine leafroll associated virus-3. Virus Genes 37: 110-118.
25. Jooste AE, Maree HJ, Bellstedt DU, Goszczynski DE, Pietersen G, et al. (2010) Three genetic grapevine leafroll-associated virus 3 variants identified from South African vineyards show high variability in their 5′UTR. Arch Virol 155: 1997-2006.
26. Martin RR, Eastwell KC, Wagner A, Lamprecht S, Tzanetakis IE, (2005) Survey for viruses of grapevine in Oregon and Washington. Plant Dis 89: 763-766.
27. Fajardo TVM, Dianese EC, Eiras M, Cerqueira DM, Lopes DB, et al. (2007) Variability of the coat protein gene of Grapevine leafroll-associated virus 3 in Brazil. Fitopatol Bras 32: 335-340.
28. Turturo C, Saldarelli P, Yafeng D, Digiaro M, Minafra A, et al. (2005) Genetic variability and population structure of Grapevine leafroll-associated virus 3 isolates. J Gen Virol 86: 217-224.
29. Fuchs M, Marsella-Herrick P, Loeb GM, Martinson TE, Hoch HC, (2009) Diversity of ampeloviruses in mealybug and soft scale vectors and in grapevine hosts from leafroll-affected vineyards. Phytopathology 99: 1177-1184.