메뉴 건너뛰기




Volumn 791, Issue , 2011, Pages 125-133

Methylated-CpG Island Recovery Assay

Author keywords

DNA methylation; Methyl CpG binding protein; Methylated CpG island recovery assay; Microarray; Next generation sequencing

Indexed keywords

DNA; MICROSPHERE;

EID: 80054788534     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-316-5_10     Document Type: Chapter
Times cited : (9)

References (25)
  • 1
    • 0028191781 scopus 로고
    • Epigenetics: An overview
    • Holliday, R. (1994) Epigenetics: an overview., Dev Genet 15, 453–457.
    • (1994) Dev Genet , vol.15 , pp. 453-457
    • Holliday, R.1
  • 2
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird, A. (1986) CpG-rich islands and the function of DNA methylation., Nature 321, 209–213.
    • (1986) Nature , vol.321 , pp. 209-213
    • Bird, A.1
  • 4
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones, P., and Baylin, S. (2002) The fundamental role of epigenetic events in cancer., Nat Rev Genet 3, 415–428.
    • (2002) Nat Rev Genet , vol.3 , pp. 415-428
    • Jones, P.1    Baylin, S.2
  • 5
    • 0036753290 scopus 로고    scopus 로고
    • DNA methylation: A profile of methods and applications
    • Fraga, M., and Esteller, M. (2002) DNA methylation: a profile of methods and applications., Biotechniques 33, 632, 634, 636–649.
    • (2002) Biotechniques , vol.33 , pp. 636-649
    • Fraga, M.1    Esteller, M.2
  • 6
    • 0036340020 scopus 로고    scopus 로고
    • An overview of the analysis of DNA methylation in mammalian genomes
    • Shiraishi, M., Oates, A., and Sekiya, T. (2002) An overview of the analysis of DNA methylation in mammalian genomes., Biol Chem 383, 893–906.
    • (2002) Biol Chem , vol.383 , pp. 893-906
    • Shiraishi, M.1    Oates, A.2    Sekiya, T.3
  • 7
    • 27744443057 scopus 로고    scopus 로고
    • Methylated-CpG island recovery assay: A new technique for the rapid detection of methylated-CpG islands in cancer
    • Rauch, T., and Pfeifer, G. (2005) Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer., Lab Invest 85, 1172–1180.
    • (2005) Lab Invest , vol.85 , pp. 1172-1180
    • Rauch, T.1    Pfeifer, G.2
  • 8
    • 33748055105 scopus 로고    scopus 로고
    • MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
    • Rauch, T., Li, H., Wu, X., and Pfeifer, G. (2006) MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells., Cancer Res 66, 7939–7947.
    • (2006) Cancer Res , vol.66 , pp. 7939-7947
    • Rauch, T.1    Li, H.2    Wu, X.3    Pfeifer, G.4
  • 9
    • 0018785482 scopus 로고
    • Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II
    • Singer, J., Roberts-Ems, J., and Riggs, A. (1979) Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II., Science 203, 1019–1021.
    • (1979) Science , vol.203 , pp. 1019-1021
    • Singer, J.1    Roberts-Ems, J.2    Riggs, A.3
  • 10
    • 0028096611 scopus 로고
    • High sensitivity mapping of methylated cytosines
    • Clark, S., Harrison, J., Paul, C., and Frommer, M. (1994) High sensitivity mapping of methylated cytosines., Nucleic Acids Res 22, 2990–2997.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2990-2997
    • Clark, S.1    Harrison, J.2    Paul, C.3    Frommer, M.4
  • 11
    • 0026546877 scopus 로고
    • A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
    • Frommer, M., McDonald, L., Millar, D., Collis, C., Watt, F., Grigg, G., Molloy, P., and Paul, C. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands., Proc Natl Acad Sci USA 89, 1827–1831.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1827-1831
    • Frommer, M.1    McDonald, L.2    Millar, D.3    Collis, C.4    Watt, F.5    Grigg, G.6    Molloy, P.7    Paul, C.8
  • 12
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber, M., Davies, J., Wittig, D., Oakeley, E., Haase, M., Lam, W., and Schübeler, D. (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells., Nat Genet 37, 853–862.
    • (2005) Nat Genet , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.2    Wittig, D.3    Oakeley, E.4    Haase, M.5    Lam, W.6    Schübeler, D.7
  • 13
    • 0035962668 scopus 로고    scopus 로고
    • Methyl CpG binding proteins: Coupling chromatin architecture to gene regulation
    • Wade, P. (2001) Methyl CpG binding proteins: coupling chromatin architecture to gene regulation., Oncogene 20, 3166–3173.
    • (2001) Oncogene , vol.20 , pp. 3166-3173
    • Wade, P.1
  • 14
    • 0034055278 scopus 로고    scopus 로고
    • Mammalian methyltransferases and methyl-CpG-binding domains: Proteins involved in DNA methylation
    • Hendrich, B., and Bird, A. (2000) Mammalian methyltransferases and methyl-CpG-binding domains: proteins involved in DNA methylation., Curr Top Microbiol Immunol 249, 55–74.
    • (2000) Curr Top Microbiol Immunol , vol.249 , pp. 55-74
    • Hendrich, B.1    Bird, A.2
  • 15
    • 0037444026 scopus 로고    scopus 로고
    • The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
    • Fraga, M., Ballestar, E., Montoya, G., Taysavang, P., Wade, P., and Esteller, M. (2003) The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties., Nucleic Acids Res 31, 1765–1774.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1765-1774
    • Fraga, M.1    Ballestar, E.2    Montoya, G.3    Taysavang, P.4    Wade, P.5    Esteller, M.6
  • 16
    • 24044523177 scopus 로고    scopus 로고
    • DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG
    • Klose, R., Sarraf, S., Schmiedeberg, L., McDermott, S., Stancheva, I., and Bird, A. (2005) DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG., Mol Cell 19, 667–678.
    • (2005) Mol Cell , vol.19 , pp. 667-678
    • Klose, R.1    Sarraf, S.2    Schmiedeberg, L.3    McDermott, S.4    Stancheva, I.5    Bird, A.6
  • 17
    • 10644222635 scopus 로고    scopus 로고
    • MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
    • Jiang, C., Jin, S., and Pfeifer, G. (2004) MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex., J Biol Chem 279, 52456–52464.
    • (2004) J Biol Chem , vol.279 , pp. 52456-52464
    • Jiang, C.1    Jin, S.2    Pfeifer, G.3
  • 18
    • 34248361968 scopus 로고    scopus 로고
    • Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay
    • Rauch, T., Wang, Z., Zhang, X., Zhong, X., Wu, X., Lau, S., Kernstine, K., Riggs, A., and Pfeifer, G. (2007) Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay., Proc Natl Acad Sci USA 104, 5527–5532.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 5527-5532
    • Rauch, T.1    Wang, Z.2    Zhang, X.3    Zhong, X.4    Wu, X.5    Lau, S.6    Kernstine, K.7    Riggs, A.8    Pfeifer, G.9
  • 21
    • 73949107850 scopus 로고    scopus 로고
    • Whole-genome microarrays: Applications and technical issues
    • Gregory, B., and Belostotsky, D. (2009) Whole-genome microarrays: applications and technical issues., Methods Mol Biol 553, 39–56.
    • (2009) Methods Mol Biol , vol.553 , pp. 39-56
    • Gregory, B.1    Belostotsky, D.2
  • 24
    • 70249146903 scopus 로고    scopus 로고
    • Advantages of next-generation sequencing versus the microarray in epigenetic research
    • Hurd, P., and Nelson, C. (2009) Advantages of next-generation sequencing versus the microarray in epigenetic research., Brief Funct Genomic Proteomic 8, 174–183.
    • (2009) Brief Funct Genomic Proteomic , vol.8 , pp. 174-183
    • Hurd, P.1    Nelson, C.2
  • 25
    • 63449136848 scopus 로고    scopus 로고
    • DNA methylation patterns in lung carcinomas
    • Pfeifer, G. P., and Rauch, T. A. (2009) DNA methylation patterns in lung carcinomas, Semin Cancer Biol 19, 181–187.
    • (2009) Semin Cancer Biol , vol.19 , pp. 181-187
    • Pfeifer, G.P.1    Rauch, T.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.