-
1
-
-
0028191781
-
Epigenetics: An overview
-
Holliday, R. (1994) Epigenetics: an overview., Dev Genet 15, 453–457.
-
(1994)
Dev Genet
, vol.15
, pp. 453-457
-
-
Holliday, R.1
-
2
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
Bird, A. (1986) CpG-rich islands and the function of DNA methylation., Nature 321, 209–213.
-
(1986)
Nature
, vol.321
, pp. 209-213
-
-
Bird, A.1
-
3
-
-
0343621494
-
Aberrant CpG-island methylation has non-random and tumour-type-specific patterns
-
Costello, J. F., Fruhwald, M. C., Smiraglia, D. J., Rush, L. J., Robertson, G. P., Gao, X., Wright, F. A., Feramisco, J. D., Peltomaki, P., Lang, J. C., Schuller, D. E., Yu, L., Bloomfield, C. D., Caligiuri, M. A., Yates, A., Nishikawa, R., Su Huang, H., Petrelli, N. J., Zhang, X., O’Dorisio, M. S., Held, W. A., Cavenee, W. K., and Plass, C. (2000) Aberrant CpG-island methylation has non-random and tumour-type-specific patterns, Nat Genet, 24, 132.
-
(2000)
Nat Genet
, vol.24
, pp. 132
-
-
Costello, J.F.1
Fruhwald, M.C.2
Smiraglia, D.J.3
Rush, L.J.4
Robertson, G.P.5
Gao, X.6
Wright, F.A.7
Feramisco, J.D.8
Peltomaki, P.9
Lang, J.C.10
Schuller, D.E.11
Yu, L.12
Bloomfield, C.D.13
Caligiuri, M.A.14
Yates, A.15
Nishikawa, R.16
Su Huang, H.17
Petrelli, N.J.18
Zhang, X.19
O’Dorisio, M.S.20
Held, W.A.21
Cavenee, W.K.22
Plass, C.23
more..
-
4
-
-
0036274359
-
The fundamental role of epigenetic events in cancer
-
Jones, P., and Baylin, S. (2002) The fundamental role of epigenetic events in cancer., Nat Rev Genet 3, 415–428.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 415-428
-
-
Jones, P.1
Baylin, S.2
-
5
-
-
0036753290
-
DNA methylation: A profile of methods and applications
-
Fraga, M., and Esteller, M. (2002) DNA methylation: a profile of methods and applications., Biotechniques 33, 632, 634, 636–649.
-
(2002)
Biotechniques
, vol.33
, pp. 636-649
-
-
Fraga, M.1
Esteller, M.2
-
6
-
-
0036340020
-
An overview of the analysis of DNA methylation in mammalian genomes
-
Shiraishi, M., Oates, A., and Sekiya, T. (2002) An overview of the analysis of DNA methylation in mammalian genomes., Biol Chem 383, 893–906.
-
(2002)
Biol Chem
, vol.383
, pp. 893-906
-
-
Shiraishi, M.1
Oates, A.2
Sekiya, T.3
-
7
-
-
27744443057
-
Methylated-CpG island recovery assay: A new technique for the rapid detection of methylated-CpG islands in cancer
-
Rauch, T., and Pfeifer, G. (2005) Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer., Lab Invest 85, 1172–1180.
-
(2005)
Lab Invest
, vol.85
, pp. 1172-1180
-
-
Rauch, T.1
Pfeifer, G.2
-
8
-
-
33748055105
-
MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
-
Rauch, T., Li, H., Wu, X., and Pfeifer, G. (2006) MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells., Cancer Res 66, 7939–7947.
-
(2006)
Cancer Res
, vol.66
, pp. 7939-7947
-
-
Rauch, T.1
Li, H.2
Wu, X.3
Pfeifer, G.4
-
9
-
-
0018785482
-
Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II
-
Singer, J., Roberts-Ems, J., and Riggs, A. (1979) Methylation of mouse liver DNA studied by means of the restriction enzymes msp I and hpa II., Science 203, 1019–1021.
-
(1979)
Science
, vol.203
, pp. 1019-1021
-
-
Singer, J.1
Roberts-Ems, J.2
Riggs, A.3
-
10
-
-
0028096611
-
High sensitivity mapping of methylated cytosines
-
Clark, S., Harrison, J., Paul, C., and Frommer, M. (1994) High sensitivity mapping of methylated cytosines., Nucleic Acids Res 22, 2990–2997.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2990-2997
-
-
Clark, S.1
Harrison, J.2
Paul, C.3
Frommer, M.4
-
11
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer, M., McDonald, L., Millar, D., Collis, C., Watt, F., Grigg, G., Molloy, P., and Paul, C. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands., Proc Natl Acad Sci USA 89, 1827–1831.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.2
Millar, D.3
Collis, C.4
Watt, F.5
Grigg, G.6
Molloy, P.7
Paul, C.8
-
12
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
Weber, M., Davies, J., Wittig, D., Oakeley, E., Haase, M., Lam, W., and Schübeler, D. (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells., Nat Genet 37, 853–862.
-
(2005)
Nat Genet
, vol.37
, pp. 853-862
-
-
Weber, M.1
Davies, J.2
Wittig, D.3
Oakeley, E.4
Haase, M.5
Lam, W.6
Schübeler, D.7
-
13
-
-
0035962668
-
Methyl CpG binding proteins: Coupling chromatin architecture to gene regulation
-
Wade, P. (2001) Methyl CpG binding proteins: coupling chromatin architecture to gene regulation., Oncogene 20, 3166–3173.
-
(2001)
Oncogene
, vol.20
, pp. 3166-3173
-
-
Wade, P.1
-
14
-
-
0034055278
-
Mammalian methyltransferases and methyl-CpG-binding domains: Proteins involved in DNA methylation
-
Hendrich, B., and Bird, A. (2000) Mammalian methyltransferases and methyl-CpG-binding domains: proteins involved in DNA methylation., Curr Top Microbiol Immunol 249, 55–74.
-
(2000)
Curr Top Microbiol Immunol
, vol.249
, pp. 55-74
-
-
Hendrich, B.1
Bird, A.2
-
15
-
-
0037444026
-
The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
-
Fraga, M., Ballestar, E., Montoya, G., Taysavang, P., Wade, P., and Esteller, M. (2003) The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties., Nucleic Acids Res 31, 1765–1774.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1765-1774
-
-
Fraga, M.1
Ballestar, E.2
Montoya, G.3
Taysavang, P.4
Wade, P.5
Esteller, M.6
-
16
-
-
24044523177
-
DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG
-
Klose, R., Sarraf, S., Schmiedeberg, L., McDermott, S., Stancheva, I., and Bird, A. (2005) DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG., Mol Cell 19, 667–678.
-
(2005)
Mol Cell
, vol.19
, pp. 667-678
-
-
Klose, R.1
Sarraf, S.2
Schmiedeberg, L.3
McDermott, S.4
Stancheva, I.5
Bird, A.6
-
17
-
-
10644222635
-
MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
-
Jiang, C., Jin, S., and Pfeifer, G. (2004) MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex., J Biol Chem 279, 52456–52464.
-
(2004)
J Biol Chem
, vol.279
, pp. 52456-52464
-
-
Jiang, C.1
Jin, S.2
Pfeifer, G.3
-
18
-
-
34248361968
-
Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay
-
Rauch, T., Wang, Z., Zhang, X., Zhong, X., Wu, X., Lau, S., Kernstine, K., Riggs, A., and Pfeifer, G. (2007) Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay., Proc Natl Acad Sci USA 104, 5527–5532.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5527-5532
-
-
Rauch, T.1
Wang, Z.2
Zhang, X.3
Zhong, X.4
Wu, X.5
Lau, S.6
Kernstine, K.7
Riggs, A.8
Pfeifer, G.9
-
19
-
-
59149084538
-
The human colon cancer methylome shows similar hypo-and hypermethylation at conserved tissue-specific CpG island shores
-
Irizarry, R., Ladd-Acosta, C., Wen, B., Wu, Z., Montano, C., Onyango, P., Cui, H., Gabo, K., Rongione, M., Webster, M., Ji, H., Potash, J., Sabunciyan, S., and Feinberg, A. (2009) The human colon cancer methylome shows similar hypo-and hypermethylation at conserved tissue-specific CpG island shores., Nat Genet 41, 178–186.
-
(2009)
Nat Genet
, vol.41
, pp. 178-186
-
-
Irizarry, R.1
Ladd-Acosta, C.2
Wen, B.3
Wu, Z.4
Montano, C.5
Onyango, P.6
Cui, H.7
Gabo, K.8
Rongione, M.9
Webster, M.10
Ji, H.11
Potash, J.12
Sabunciyan, S.13
Feinberg, A.14
-
20
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
-
Zhang, X., Yazaki, J., Sundaresan, A., Cokus, S., Chan, S., Chen, H., Henderson, I., Shinn, P., Pellegrini, M., Jacobsen, S., and Ecker, J. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis., Cell 126, 1189–1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.5
Chen, H.6
Henderson, I.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.10
Ecker, J.11
-
21
-
-
73949107850
-
Whole-genome microarrays: Applications and technical issues
-
Gregory, B., and Belostotsky, D. (2009) Whole-genome microarrays: applications and technical issues., Methods Mol Biol 553, 39–56.
-
(2009)
Methods Mol Biol
, vol.553
, pp. 39-56
-
-
Gregory, B.1
Belostotsky, D.2
-
22
-
-
58849091905
-
A human B cell methylome at 100-base pair resolution
-
Rauch, T., Wu, X., Zhong, X., Riggs, A., and Pfeifer, G. (2009) A human B cell methylome at 100-base pair resolution., Proc Natl Acad Sci USA 106, 671–678.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 671-678
-
-
Rauch, T.1
Wu, X.2
Zhong, X.3
Riggs, A.4
Pfeifer, G.5
-
23
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner, A., Mikkelsen, T., Gu, H., Wernig, M., Hanna, J., Sivachenko, A., Zhang, X., Bernstein, B., Nusbaum, C., Jaffe, D., Gnirke, A., Jaenisch, R., and Lander, E. (2008) Genome-scale DNA methylation maps of pluripotent and differentiated cells., Nature 454, 766–770.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
Zhang, X.7
Bernstein, B.8
Nusbaum, C.9
Jaffe, D.10
Gnirke, A.11
Jaenisch, R.12
Lander, E.13
-
24
-
-
70249146903
-
Advantages of next-generation sequencing versus the microarray in epigenetic research
-
Hurd, P., and Nelson, C. (2009) Advantages of next-generation sequencing versus the microarray in epigenetic research., Brief Funct Genomic Proteomic 8, 174–183.
-
(2009)
Brief Funct Genomic Proteomic
, vol.8
, pp. 174-183
-
-
Hurd, P.1
Nelson, C.2
-
25
-
-
63449136848
-
DNA methylation patterns in lung carcinomas
-
Pfeifer, G. P., and Rauch, T. A. (2009) DNA methylation patterns in lung carcinomas, Semin Cancer Biol 19, 181–187.
-
(2009)
Semin Cancer Biol
, vol.19
, pp. 181-187
-
-
Pfeifer, G.P.1
Rauch, T.A.2
|