메뉴 건너뛰기




Volumn 759, Issue , 2011, Pages 61-71

Genome-Wide Approaches to Studying Yeast Chromatin Modifications

Author keywords

ChIP Seq; Chromatin; epigenomics; genomics; histone modifications; nucleosomes

Indexed keywords

MICROCOCCAL NUCLEASE;

EID: 80054771145     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-173-4_4     Document Type: Chapter
Times cited : (5)

References (11)
  • 1
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski, A., Cuddapah, S., Cui, K., et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129, 823–837.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3
  • 2
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • Mikkelsen, T. S., Ku, M., Jaffe, D. B., et al. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553–560.
    • (2007) Nature , vol.448 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3
  • 3
    • 0032531695 scopus 로고    scopus 로고
    • Nucleosome structure of the yeast CHA1 promoter: Analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators
    • Moreira, J. M., and Holmberg, S. (1998) Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators. EMBO J. 17, 6028–6038.
    • (1998) EMBO J , vol.17 , pp. 6028-6038
    • Moreira, J.M.1    Holmberg, S.2
  • 4
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H., Ruan, J., and Durbin, R. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18, 1851–1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 5
    • 41249096306 scopus 로고    scopus 로고
    • Using quality scores and longer reads improves accuracy of Solexa read mapping
    • Smith, A. D., Xuan, Z., and Zhang, M. Q. (2008) Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC Bioinformatics 9, 128.
    • (2008) BMC Bioinformatics , vol.9
    • Smith, A.D.1    Xuan, Z.2    Zhang, M.Q.3
  • 6
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oligonucleotide alignment program
    • Li, R., Li, Y., Kristiansen, K., and Wang, J. (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24, 713–714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 7
    • 85139164584 scopus 로고    scopus 로고
    • Efficient Large-Scale Alignment of Nucleotide Databases (ELAND). Whole genome alignments to a reference genome. Written by Illumina author Anthony J. Cox for the Solexa 1G machine. http://bioinfo. cgrb.oregonstate.edu/docs/solexa/
    • Efficient Large-Scale Alignment of Nucleotide Databases (ELAND). Whole genome alignments to a reference genome. Written by Illumina author Anthony J. Cox for the Solexa 1G machine. http://bioinfo. cgrb.oregonstate.edu/docs/solexa/
  • 8
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent, W. J., Sugnet, C. W., Furey, T. S., et al. (2002) The human genome browser at UCSC. Genome Res. 12, 996–1006.
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1    Sugnet, C.W.2    Furey, T.S.3
  • 9
    • 85139148097 scopus 로고    scopus 로고
    • http://www.affymetrix.com/
  • 10
    • 85139118184 scopus 로고    scopus 로고
    • http://www.ensembl.org
  • 11
    • 43349089437 scopus 로고    scopus 로고
    • GeneTrack – a genomic data processing and visualization framework
    • Albert, I., Wachi, S., Jiang, C., and Pugh, B. F. (2008) GeneTrack – a genomic data processing and visualization framework. Bioinformatics 24, 1305–1306.
    • (2008) Bioinformatics , vol.24 , pp. 1305-1306
    • Albert, I.1    Wachi, S.2    Jiang, C.3    Pugh, B.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.