Plasticicumulans acidivorans gen. nov., sp. nov., a polyhydroxyalkanoate-accumulating gammaproteobacterium from a sequencing-batch bioreactor

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 9, 2011, Pages 2314-2319

  Jiang, Yang ^a   Dimitry, Yu ^a,b   Kleerebezem, Robbert ^a   Muyzer, Gerard ^a   van Loosdrecht, Mark ^a  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^b WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; FATTY ACID; GENOMIC DNA; HYDROXYBUTYRIC ACID; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; BIOREACTOR; GAMMAPROTEOBACTERIA; GENE SEQUENCE; METHYLOCALDUM; METHYLOCOCCUS; NATRONOCELLA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASTICICUMULANS ACIDIVORANS; PRIORITY JOURNAL; PROTEIN ANALYSIS;

AEROBIOSIS; BASE COMPOSITION; BIOREACTORS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAGELLA; GAMMAPROTEOBACTERIA; HYDROGEN-ION CONCENTRATION; LOCOMOTION; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; POLYHYDROXYALKANOATES; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TEMPERATURE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; METHYLOCALDUM; METHYLOCOCCUS; NEGIBACTERIA;

EID: 80054770355     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.021410-0     Document Type: Article

References (30)

1. Asao, M., Takaichi, S. & Madigan, M. T. (2007). Thiocapsa imhoffii, sp. nov., an alkaliphilic purple sulfur bacterium of the family Chromatiaceae from Soap Lake, Washington (USA). Arch Microbiol 188, 665-675.
2. Asselineau, J. & Trüper, H. G. (1982). Lipid composition of six species of the phototrophic bacterial genus Ectothiorhodospira. Biochim Biophys Acta 712, 111-116.
3. Bodrossy, L., Holmes, E. M., Holmes, A. J., Kovács, K. L. & Murrell, J. C. (1997). Analysis of 16S rRNA and methane monooxygenase gene sequences reveals a novel group of thermotolerant and thermophilic methanotrophs, Methylocaldum gen. nov. Arch Microbiol 168, 493-503.
4. Bowman, J. P., Sly, L. I., Nichols, P. D. & Hayward, A. C. (1993). Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs. Int J Syst Bacteriol 43, 735-753.
5. Braunegg, G., Lefebvre, G. & Genser, K. F. (1998). Polyhydroxyalkanoates, biopolyesters from renewable resources: physiological and engineering aspects. J Biotechnol 65, 127-161.
6. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
7. Gorlenko, V. M., Bryantseva, I. A., Rabold, S., Tourova, T. P., Rubtsova, D., Smirnova, E., Thiel, V. & Imhoff, J. F. (2009). Ectothiorhodospira variabilis sp. nov., an alkaliphilic and halophilic purple sulfur bacterium from soda lakes. Int J Syst Evol Microbiol 59, 658-664.
8. Hazeu, W., Batenburg van der Vegte W. H. & Bruyn, J. C. (1980). Some characteristics of Methylococcus mobilis sp. nov. Arch Microbiol 124, 211-220.
9. Imhoff, J. F. (1984). Quinones of phototrophic purple bacteria. FEMS Microbiol Lett 25, 85-89.
10. Imhoff, J. F. (2006). The family Ectothiorhodospiraceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 6, pp. 874-886. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer E & E. Stackebrandt. New York: Springer.
11. Imhoff, J. F., Kushner, D. J., Kushwaha, S. C. & Kates, M. (1982). Polar lipids in phototrophic bacteria of the Rhodospirillaceae and Chromatiaceae families. J Bacteriol 150, 1192-1201.
12. Johnson, K., Jiang, Y., Kleerebezem, R., Muyzer, G. & van Loosdrecht, M. C. M. (2009). Enrichment of a mixed bacterial culture with a high polyhydroxyalkanoate storage capacity. Biomacromolecules 10, 670-676.
13. Kleerebezem, R. & van Loosdrecht, M. C. M. (2007). Mixed culture biotechnology for bioenergy production. Curr Opin Biotechnol 18, 207-212.
14. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
15. Marmur, J. (1961). Procedure for isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
16. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
17. Sarma, C., Sen, A., Varghese, R. & Misra, A. K. (1998). A novel technique for isolation of Frankia and generation of single-spore cultures. Can J Microbiol 44, 490-492.
18. Schroeder, S., Petrovski, S., Campbell, B., McIlroy, S. & Seviour, R. (2009). Phylogeny and in situ identification of a novel gammaproteobacterium in activated sludge. FEMS Microbiol Lett 297, 157-163.
19. Serafim, L. S., Lemos, P. C., Oliveira, R. & Reis, M. A. M. (2004). Optimization of polyhydroxybutyrate production by mixed cultures submitted to aerobic dynamic feeding conditions. Biotechnol Bioeng 87, 145-160.
20. Slater, S. C., Voige, W. H. & Dennis, D. E. (1988). Cloning and expression in Escherichia coli of the Alcaligenes eutrophus H16 poly-bhydroxybutyrate biosynthetic pathway. J Bacteriol 170, 4431-4436.
21. Sorokin, D. Yu., Lysenko, A. M., Mityushina, L. L., Tourova, T. P., Jones, B. E., Rainey, F. A., Robertson, L. A. & Kuenen, G. J. (2001). Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp. nov. and Thioalkalivibrio denitrificans sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic sulfur-oxidizing bacteria from soda lakes. Int J Syst Evol Microbiol 51, 565-580.
22. Sorokin, D. Yu., van Pelt, S., Tourova, T. P., Takaichi, S. & Muyzer, G. (2007). Acetonitrile degradation under haloalkaline conditions by Natronocella acetinitrilica gen. nov., sp. nov. Microbiology 153, 1157-1164.
23. Steinbüchel, A. (2001). Perspectives for biotechnological production and utilization of biopolymers: metabolic engineering of polyhydroxyalkanoate biosynthesis pathways as a successful example. Macromol Biosci 1, 1-24.
24. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
25. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
26. van Loosdrecht, M. C., Pot, M. A. & Heijnen, J. J. (1997). Importance of bacterial storage polymers in bioprocesses. Water Sci Technol 35 (1),41-47.
27. Vishniac, W. & Santer, M. (1957). The thiobacilli. Bacteriol Rev 21, 195-213.
28. Watson, S. W. (1971). Taxonomic considerations of the family Nitrobacteraceae Buchanan. Int J Syst Bacteriol 21, 254-270.
29. Yokota, A., Akagawa-Matsushita, M., Hiraishi, A., Katayama, Y., Urakami, T. & Yamasato, K. (1992). Distribution of quinone systems in microorganisms: gram-negative eubacteria. Bull Jpn Fed Cult Coll 8, 136-171.
30. Zhilina, T. N., Zavarzin, G. A., Rainey, F. A., Pikuta, E. N., Osipov, G. A. & Kostrikina, N. A. (1997). Desulfonatronovibrio hydrogenovorans gen. nov., sp. nov., an alkaliphilic, sulfate-reducing bacterium. Int J Syst Bacteriol 47, 144-149.