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Volumn 35, Issue 7, 2011, Pages 632-637

Approximate and exact tests of Hardy-Weinberg equilibrium using uncertain genotypes

Author keywords

Genotype probabilities; Measurement error; Quality control

Indexed keywords

ARTICLE; CHI SQUARE TEST; COMPUTER SIMULATION; COPY NUMBER VARIATION; ERROR; GENOTYPE; HUMAN; MOLECULAR GENETICS; PROBABILITY; QUALITY CONTROL; SINGLE NUCLEOTIDE POLYMORPHISM; UNCERTAINTY;

EID: 80054746201     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20612     Document Type: Article
Times cited : (13)

References (34)
  • 2
    • 71149112981 scopus 로고    scopus 로고
    • Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies
    • Browning BL, Yu Z. 2009. Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies. Am J Hum Genet 85:847-861.
    • (2009) Am J Hum Genet , vol.85 , pp. 847-861
    • Browning, B.L.1    Yu, Z.2
  • 3
    • 0017262294 scopus 로고
    • An exact test of the Hardy-Weinberg law
    • Chapco W. 1976. An exact test of the Hardy-Weinberg law. Biometrics 32:183-189.
    • (1976) Biometrics , vol.32 , pp. 183-189
    • Chapco, W.1
  • 4
    • 33744454405 scopus 로고    scopus 로고
    • Quantification of the power of Hardy-Weinberg equilibrium testing to detect genotyping error
    • Cox DG, Kraft P. 2006. Quantification of the power of Hardy-Weinberg equilibrium testing to detect genotyping error. Hum Hered 61:10-14.
    • (2006) Hum Hered , vol.61 , pp. 10-14
    • Cox, D.G.1    Kraft, P.2
  • 5
    • 0017659970 scopus 로고
    • Testing for Hardy-Weinberg equilibrium in small samples
    • Elston RC, Forthofer R. 1977. Testing for Hardy-Weinberg equilibrium in small samples. Biometrics 33:536-542.
    • (1977) Biometrics , vol.33 , pp. 536-542
    • Elston, R.C.1    Forthofer, R.2
  • 6
    • 0000448819 scopus 로고
    • A comparison of tests for Hardy-Weinberg Equilibrium
    • Emigh TH. 1980. A comparison of tests for Hardy-Weinberg Equilibrium. Biometrics 36:627-642.
    • (1980) Biometrics , vol.36 , pp. 627-642
    • Emigh, T.H.1
  • 8
    • 1842859051 scopus 로고    scopus 로고
    • Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms
    • Gordon D, Finch SJ, Nothnagel M, Ott J. 2002. Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms. Hum Hered 54:22-33.
    • (2002) Hum Hered , vol.54 , pp. 22-33
    • Gordon, D.1    Finch, S.J.2    Nothnagel, M.3    Ott, J.4
  • 9
    • 77951960922 scopus 로고    scopus 로고
    • The number of markers in the HapMap project: some notes on chi-square and exact tests for Hardy-Weinberg equilibrium
    • author reply 818-819.
    • Graffelman J. 2010. The number of markers in the HapMap project: some notes on chi-square and exact tests for Hardy-Weinberg equilibrium. Am J Hum Genet 86:813-818; author reply 818-819.
    • (2010) Am J Hum Genet , vol.86 , pp. 813-818
    • Graffelman, J.1
  • 10
    • 0026689178 scopus 로고
    • Performing the exact test of Hardy-Weinberg proportion for multiple alleles
    • Guo SW, Thompson EA. 1992. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-372.
    • (1992) Biometrics , vol.48 , pp. 361-372
    • Guo, S.W.1    Thompson, E.A.2
  • 11
    • 0000178020 scopus 로고
    • An exact test for randomness of mating
    • Haldane JBS. 1954. An exact test for randomness of mating. J Genet 52:631-635.
    • (1954) J Genet , vol.52 , pp. 631-635
    • Haldane, J.B.S.1
  • 12
    • 37049251476 scopus 로고
    • Mendelian proportions in a mixed population
    • Hardy GH. 1908. Mendelian proportions in a mixed population. Science 28:49-50.
    • (1908) Science , vol.28 , pp. 49-50
    • Hardy, G.H.1
  • 14
    • 0031492508 scopus 로고    scopus 로고
    • Markov chains for Monte Carlo tests of genetic equilibrium in multidimensional contingency tables
    • Lazzeroni LC, Lange K. 1997. Markov chains for Monte Carlo tests of genetic equilibrium in multidimensional contingency tables. Ann Stat 25:138-168.
    • (1997) Ann Stat , vol.25 , pp. 138-168
    • Lazzeroni, L.C.1    Lange, K.2
  • 15
    • 79957950801 scopus 로고    scopus 로고
    • SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
    • Le SQ, Durbin R. 2011. SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples. Genome Res 21:952-960.
    • (2011) Genome Res , vol.21 , pp. 952-960
    • Le, S.Q.1    Durbin, R.2
  • 16
    • 27744560561 scopus 로고    scopus 로고
    • Detection of genotyping errors and pseudo-SNPs via deviations from Hardy-Weinberg equilibrium
    • Leal SM. 2005. Detection of genotyping errors and pseudo-SNPs via deviations from Hardy-Weinberg equilibrium. Genet Epidemiol 29:204-214.
    • (2005) Genet Epidemiol , vol.29 , pp. 204-214
    • Leal, S.M.1
  • 17
    • 0001882950 scopus 로고
    • On a matching problem arising in genetics
    • Levene H. 1949. On a matching problem arising in genetics. Ann Math Stat 20:91-94.
    • (1949) Ann Math Stat , vol.20 , pp. 91-94
    • Levene, H.1
  • 18
    • 50249144746 scopus 로고    scopus 로고
    • Assessing departure from Hardy-Weinberg equilibrium in the presence of disease association
    • Li M, Li C. 2008. Assessing departure from Hardy-Weinberg equilibrium in the presence of disease association. Genet Epidemiol 32:589-599.
    • (2008) Genet Epidemiol , vol.32 , pp. 589-599
    • Li, M.1    Li, C.2
  • 19
    • 79957951017 scopus 로고    scopus 로고
    • Low-coverage sequencing: implications for design of complex trait association studies
    • Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR. 2011. Low-coverage sequencing: implications for design of complex trait association studies. Genome Res 21:940-951.
    • (2011) Genome Res , vol.21 , pp. 940-951
    • Li, Y.1    Sidore, C.2    Kang, H.M.3    Boehnke, M.4    Abecasis, G.R.5
  • 20
    • 0000555744 scopus 로고
    • Statistical inference concerning Hardy-Weinberg equilibrium
    • Lindley DV. 1988. Statistical inference concerning Hardy-Weinberg equilibrium. Bayesian Stat 3:307-326.
    • (1988) Bayesian Stat , vol.3 , pp. 307-326
    • Lindley, D.V.1
  • 21
    • 0023552085 scopus 로고
    • An exact test for Hardy-Weinberg and multiple alleles
    • Louis EJ, Dempster ER. 1987. An exact test for Hardy-Weinberg and multiple alleles. Biometrics 43:805-811.
    • (1987) Biometrics , vol.43 , pp. 805-811
    • Louis, E.J.1    Dempster, E.R.2
  • 22
    • 77953808087 scopus 로고    scopus 로고
    • Genotype imputation for genome-wide association studies
    • Marchini J, Howie B. 2010. Genotype imputation for genome-wide association studies. Nat Rev Genet 11:499-511.
    • (2010) Nat Rev Genet , vol.11 , pp. 499-511
    • Marchini, J.1    Howie, B.2
  • 23
    • 34347344976 scopus 로고    scopus 로고
    • A new multipoint method for genome-wide association studies by imputation of genotypes
    • Marchini J, Howie B, Myers S, McVean G, Donnelly P. 2007. A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet 39:906-913.
    • (2007) Nat Genet , vol.39 , pp. 906-913
    • Marchini, J.1    Howie, B.2    Myers, S.3    McVean, G.4    Donnelly, P.5
  • 25
    • 0034977815 scopus 로고    scopus 로고
    • An unconditional exact test for the Hardy-Weinberg equilibrium law: sample-space ordering using the Bayes factor
    • Montoya-Delgado LE, Irony TZ, Pereira CA de B, Whittle MR. 2001. An unconditional exact test for the Hardy-Weinberg equilibrium law: sample-space ordering using the Bayes factor. Genetics 158:875-883.
    • (2001) Genetics , vol.158 , pp. 875-883
    • Montoya-Delgado, L.E.1    Irony, T.Z.2    Pereira, C.B.3    Whittle, M.R.4
  • 26
    • 33845401646 scopus 로고    scopus 로고
    • Genuine Bayesian multiallelic significance test for the Hardy-Weinberg equilibrium law
    • Pereira CA de B, Nakano F, Stern JM, Whittle MR. 2006. Genuine Bayesian multiallelic significance test for the Hardy-Weinberg equilibrium law. Genet Mol Res 5:619-631.
    • (2006) Genet Mol Res , vol.5 , pp. 619-631
    • Pereira, C.A.B.1    Nakano, F.2    Stern, J.M.3    Whittle, M.R.4
  • 27
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing.
    • R Development Core Team. 2010. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2010) R: A Language and Environment for Statistical Computing
  • 28
    • 33845225116 scopus 로고    scopus 로고
    • Exact tests of Hardy-Weinberg equilibrium and homogeneity of disequilibrium across strata
    • Schaid DJ, Batzler AJ, Jenkins GD, Hildebrandt MAT. 2006. Exact tests of Hardy-Weinberg equilibrium and homogeneity of disequilibrium across strata. Am J Hum Genet 79:1071-1080.
    • (2006) Am J Hum Genet , vol.79 , pp. 1071-1080
    • Schaid, D.J.1    Batzler, A.J.2    Jenkins, G.D.3    Hildebrandt, M.A.T.4
  • 29
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium.
    • The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 30
    • 0001319742 scopus 로고
    • Über den Nachweis der Vererbung beim Menschen
    • Weinberg W. 1908. Über den Nachweis der Vererbung beim Menschen. Jahresh Ver Vaterl Naturkd Württemb 64:369-382.
    • (1908) Jahresh Ver Vaterl Naturkd Württemb , vol.64 , pp. 369-382
    • Weinberg, W.1
  • 31
    • 4444302308 scopus 로고    scopus 로고
    • Tests for establishing compatibility of an observed genotype distribution with Hardy-Weinberg equilibrium in the case of a biallelic locus
    • Wellek S. 2004. Tests for establishing compatibility of an observed genotype distribution with Hardy-Weinberg equilibrium in the case of a biallelic locus. Biometrics 60:694-703.
    • (2004) Biometrics , vol.60 , pp. 694-703
    • Wellek, S.1
  • 32
  • 34
    • 66249089031 scopus 로고    scopus 로고
    • A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
    • Yu C, Zhang S, Zhou C, Sile S. 2009. A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies. Genet Epidemiol 33:275-280.
    • (2009) Genet Epidemiol , vol.33 , pp. 275-280
    • Yu, C.1    Zhang, S.2    Zhou, C.3    Sile, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.