RNA Sequencing

Methods in Molecular Biology

Volumn 759, Issue , 2011, Pages 125-132

  Waern, Karl ^a,b   Nagalakshmi, Ugrappa ^a   Snyder, Michael ^a,b  

^a YALE UNIVERSITY   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

high throughput sequencing; RNA; RNA Seq; transcription profiling; transcriptome

Indexed keywords

COMPLEMENTARY DNA; FUNGAL RNA;

ARTICLE; BIOSYNTHESIS; CYTOLOGY; GENE LIBRARY; GENETICS; GENOMICS; ISOLATION AND PURIFICATION; METHODOLOGY; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS;

DNA, COMPLEMENTARY; GENE LIBRARY; GENOMICS; RNA, FUNGAL; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, RNA;

EID: 80054742134     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-173-4_8     Document Type: Chapter

References (9)

1. Nagalakshmi, U., Wang, Z., Waern, K., et al. (2008) The transcriptional landscape of the yeast whole genome defined by RNA sequencing. Science 320, 1344–1349.
2. Lister, R., O’Malley, R. C., Tonti-Filippini, J., Gregory, B. D., Millar, A. H., and Ecker, J. R. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133, 523–536.
3. Wilhelm, B. T., Marguerat, S., Watt, S., et al. (2008) Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453, 1239–1243.
4. Marioni, J. C., Mason, C. E., Mane, S. M., Stephens, M., and Gilad, Y. (2008) RNA-seq: an assessment of technical reproducibil-ity and comparison with gene expression arrays. Genome Res. 18, 1509–1517.
5. Parkhomchuk, D., Borodina, T., Amstislavskiy, V., et al. (2009) Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 37, e123.
6. Wang, Z., Gerstein, M., and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57–63.
7. Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., and Wold, B. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621–628.
8. Shendure, J. (2008) The beginning of the end for microarrays? Nat. Methods 5, 585–587.
9. Morozova, O., and Marra, M. A. (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics 92, 255–264.