메뉴 건너뛰기




Volumn 130, Issue 4, 2011, Pages 715-724

Functional characterization of watermelon (Citrullus lanatus L.) EST-SSR by gel electrophoresis and high resolution melting analysis

Author keywords

Cucurbits; Genetic diversity; Genetic relationship; Marker transferability; Melon

Indexed keywords

CULTIVAR; DICOTYLEDON; ELECTROKINESIS; FRUIT; GEL; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; MELTING; PLANT BREEDING; POLYMERASE CHAIN REACTION; POLYMORPHISM;

EID: 80054124371     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2011.08.014     Document Type: Article
Times cited : (34)

References (42)
  • 3
    • 0019302053 scopus 로고
    • Construction of a genetic-linkage map in man using restriction fragment length polymorphisms
    • Botstein D., White R.L., Skolnick M., Davis R.W. Construction of a genetic-linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980, 32:314-331.
    • (1980) Am. J. Hum. Genet. , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 5
    • 0037343608 scopus 로고    scopus 로고
    • Development of microsatellite markers in melon (Cucumis melo L.) and their application to major cucurbit crops
    • Chiba N., Suwabe K., Nunome T., Hirai M. Development of microsatellite markers in melon (Cucumis melo L.) and their application to major cucurbit crops. Breed. Sci. 2003, 53:21-27.
    • (2003) Breed. Sci. , vol.53 , pp. 21-27
    • Chiba, N.1    Suwabe, K.2    Nunome, T.3    Hirai, M.4
  • 6
    • 33846104189 scopus 로고    scopus 로고
    • TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species
    • D'Agostino N., Aversano M., Frusciante L., Chiusano M.L. TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species. Nucleic Acids Res. 2007, 35:901-905.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 901-905
    • D'Agostino, N.1    Aversano, M.2    Frusciante, L.3    Chiusano, M.L.4
  • 7
    • 77649232843 scopus 로고    scopus 로고
    • High resolution melting analysis for gene scanning
    • Erali M., Wittwer C.T. High resolution melting analysis for gene scanning. Methods 2010, 50:250-261.
    • (2010) Methods , vol.50 , pp. 250-261
    • Erali, M.1    Wittwer, C.T.2
  • 11
    • 34250633774 scopus 로고    scopus 로고
    • Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping
    • Herrmann M.G., Durtschi J.D., Wittwer C.T., Voelkerding K.V. Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping. Clin. Chem. 2007, 53:1544-1548.
    • (2007) Clin. Chem. , vol.53 , pp. 1544-1548
    • Herrmann, M.G.1    Durtschi, J.D.2    Wittwer, C.T.3    Voelkerding, K.V.4
  • 12
    • 0036139889 scopus 로고    scopus 로고
    • Evaluation of Citrullus sp. germplasm for resistance to Acidovorax avenae subsp. citrulli
    • Hopkins D.L., Thompson C.M. Evaluation of Citrullus sp. germplasm for resistance to Acidovorax avenae subsp. citrulli. Plant Dis. 2002, 86:61-64.
    • (2002) Plant Dis. , vol.86 , pp. 61-64
    • Hopkins, D.L.1    Thompson, C.M.2
  • 13
    • 77953147001 scopus 로고    scopus 로고
    • Development of novel EST-SSR markers for cucumber (Cucumis sativus) and their transferability to related species
    • Hu J.B., Zhou X.Y., Li J.W. Development of novel EST-SSR markers for cucumber (Cucumis sativus) and their transferability to related species. Sci. Hortic. 2010, 125:534-538.
    • (2010) Sci. Hortic. , vol.125 , pp. 534-538
    • Hu, J.B.1    Zhou, X.Y.2    Li, J.W.3
  • 14
    • 0001447458 scopus 로고
    • Further notes on Cucurbitaceae. III. Some African taxa
    • Jeffrey C. Further notes on Cucurbitaceae. III. Some African taxa. Kew Bull. 1975, 30:475-493.
    • (1975) Kew Bull. , vol.30 , pp. 475-493
    • Jeffrey, C.1
  • 15
    • 78650382446 scopus 로고    scopus 로고
    • Identification of Capsicum species using SNP markers based on high resolution melting analysis
    • Jeong H.J., Jo Y.D., Park S.W., Kang B.C. Identification of Capsicum species using SNP markers based on high resolution melting analysis. Genome 2010, 53:1029-1040.
    • (2010) Genome , vol.53 , pp. 1029-1040
    • Jeong, H.J.1    Jo, Y.D.2    Park, S.W.3    Kang, B.C.4
  • 16
    • 33847368977 scopus 로고    scopus 로고
    • Mining and charactering microsatellites in Cucumis melo expressed sequence tags from sequence database
    • Kong Q., Xiang C., Yu Z., Zhang C., Liu F., Peng C., Peng X. Mining and charactering microsatellites in Cucumis melo expressed sequence tags from sequence database. Mol. Ecol. Notes 2007, 7:281-283.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 281-283
    • Kong, Q.1    Xiang, C.2    Yu, Z.3    Zhang, C.4    Liu, F.5    Peng, C.6    Peng, X.7
  • 17
    • 77956641836 scopus 로고    scopus 로고
    • Informative SSR markers for commercial variety discrimination in watermelon (Citrullus lanatus)
    • Kwon Y.S., Oh Y.H., Yi S.I., Kim H.Y., An J.M., Yang S.G., Ok S.H., Shin J.S. Informative SSR markers for commercial variety discrimination in watermelon (Citrullus lanatus). Genes Genomics 2010, 32:115-122.
    • (2010) Genes Genomics , vol.32 , pp. 115-122
    • Kwon, Y.S.1    Oh, Y.H.2    Yi, S.I.3    Kim, H.Y.4    An, J.M.5    Yang, S.G.6    Ok, S.H.7    Shin, J.S.8
  • 18
    • 0029759568 scopus 로고    scopus 로고
    • Detection of genetic diversity using RAPD-PCR and sugar analysis in watermelon Citrullus lanantus (Thunb) Mansf germplasm
    • Lee S.J., Shin J.S., Park K.W., Hong Y.P. Detection of genetic diversity using RAPD-PCR and sugar analysis in watermelon Citrullus lanantus (Thunb) Mansf germplasm. Theor. Appl. Genet. 1996, 92:719-725.
    • (1996) Theor. Appl. Genet. , vol.92 , pp. 719-725
    • Lee, S.J.1    Shin, J.S.2    Park, K.W.3    Hong, Y.P.4
  • 19
    • 0035653908 scopus 로고    scopus 로고
    • Genetic diversity among watermelon (Citrullus lanatus and Citrullus colocynthis) accessions
    • Levi A., Thomas C.E., Keinath A.P., Wehner T.C. Genetic diversity among watermelon (Citrullus lanatus and Citrullus colocynthis) accessions. Genet. Res. Crop. Evol. 2001, 48:559-566.
    • (2001) Genet. Res. Crop. Evol. , vol.48 , pp. 559-566
    • Levi, A.1    Thomas, C.E.2    Keinath, A.P.3    Wehner, T.C.4
  • 22
    • 68349124986 scopus 로고    scopus 로고
    • EST-PCR markers representing watermelon fruit genes are polymorphic among watermelon heirloom cultivars sharing a narrow genetic base
    • Levi A., Wechter P., Davis A. EST-PCR markers representing watermelon fruit genes are polymorphic among watermelon heirloom cultivars sharing a narrow genetic base. Plant Genet. Res. 2008, 7:16-32.
    • (2008) Plant Genet. Res. , vol.7 , pp. 16-32
    • Levi, A.1    Wechter, P.2    Davis, A.3
  • 24
    • 57949100795 scopus 로고    scopus 로고
    • Development of SSR markers from ESTs of gramineous species and their chromosome location on wheat
    • Li L., Wang J., Guo Y., Jiang F., Xu Y., Wang Y., Pan H., Han G., Li R., Li S. Development of SSR markers from ESTs of gramineous species and their chromosome location on wheat. Prog. Nat. Sci. 2008, 18:1485-1490.
    • (2008) Prog. Nat. Sci. , vol.18 , pp. 1485-1490
    • Li, L.1    Wang, J.2    Guo, Y.3    Jiang, F.4    Xu, Y.5    Wang, Y.6    Pan, H.7    Han, G.8    Li, R.9    Li, S.10
  • 25
    • 44449150364 scopus 로고    scopus 로고
    • A new approach to varietal identification in plants by microsatellite high resolution melting analysis: application to the verification of grapevine and olive cultivars
    • Mackay J.F., Wright C.D., Bonfiglioli R.G. A new approach to varietal identification in plants by microsatellite high resolution melting analysis: application to the verification of grapevine and olive cultivars. Plant Methods 2008, 10.1186/1746-4811-4-8.
    • (2008) Plant Methods
    • Mackay, J.F.1    Wright, C.D.2    Bonfiglioli, R.G.3
  • 26
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:5269-5273.
    • (1979) Proc. Natl. Acad. Sci. U.S.A. , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 28
    • 0029557027 scopus 로고
    • Frequency of microsatellite sequences in rice (Oryza sativa L.)
    • Panaud O., Chen X.L., McCouch S.R. Frequency of microsatellite sequences in rice (Oryza sativa L.). Genome 1995, 38:1170-1176.
    • (1995) Genome , vol.38 , pp. 1170-1176
    • Panaud, O.1    Chen, X.L.2    McCouch, S.R.3
  • 29
    • 77954384999 scopus 로고    scopus 로고
    • Rose (Rosa hybrida L.) EST-derived microsatellite markers and their transferability to strawberry (Fragaria spp.)
    • Park Y.H., Ahn S.G., Choi Y.M., Oh H.J., Ahn D.C., Kim J.G., Kang J.S., Choi Y.W., Jeong B.R. Rose (Rosa hybrida L.) EST-derived microsatellite markers and their transferability to strawberry (Fragaria spp.). Sci. Hortic. 2010, 125:733-739.
    • (2010) Sci. Hortic. , vol.125 , pp. 733-739
    • Park, Y.H.1    Ahn, S.G.2    Choi, Y.M.3    Oh, H.J.4    Ahn, D.C.5    Kim, J.G.6    Kang, J.S.7    Choi, Y.W.8    Jeong, B.R.9
  • 31
    • 2942620715 scopus 로고    scopus 로고
    • Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.)
    • Ritschel P.S., Lins T.C.L., Tristan R.L., Buso G.S.C., Buso J.A., Ferreira M.E. Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol. 2004, 10.1186/1471-2229-4-9.
    • (2004) BMC Plant Biol.
    • Ritschel, P.S.1    Lins, T.C.L.2    Tristan, R.L.3    Buso, G.S.C.4    Buso, J.A.5    Ferreira, M.E.6
  • 33
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal R., Michener C. A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin 1958, 38:1409-1438.
    • (1958) University of Kansas Science Bulletin , vol.38 , pp. 1409-1438
    • Sokal, R.1    Michener, C.2
  • 34
    • 77951088955 scopus 로고    scopus 로고
    • Identifying resistance to powdery mildew race 2W in the USDA-ARS watermelon germplasm collection
    • Tetteh A.Y., Wehner T.C., Davis A.R. Identifying resistance to powdery mildew race 2W in the USDA-ARS watermelon germplasm collection. Crop Sci. 2010, 50:933-939.
    • (2010) Crop Sci. , vol.50 , pp. 933-939
    • Tetteh, A.Y.1    Wehner, T.C.2    Davis, A.R.3
  • 36
    • 77953431001 scopus 로고    scopus 로고
    • Development of EST-SSRs in watermelon (Citrullus lanatus var. lanatus) and their transferability to Cucumis spp
    • Verma M., Arya L. Development of EST-SSRs in watermelon (Citrullus lanatus var. lanatus) and their transferability to Cucumis spp. J. Hortic. Sci. Biotechnol. 2008, 83:732-736.
    • (2008) J. Hortic. Sci. Biotechnol. , vol.83 , pp. 732-736
    • Verma, M.1    Arya, L.2
  • 38
    • 66349095408 scopus 로고    scopus 로고
    • High-resolution DNA melting analysis: advancements and limitations
    • Wittwer C.T. High-resolution DNA melting analysis: advancements and limitations. Hum. Mutat. 2009, 30:857-859.
    • (2009) Hum. Mutat. , vol.30 , pp. 857-859
    • Wittwer, C.T.1
  • 41
    • 33751207081 scopus 로고    scopus 로고
    • Exploitation of pepper EST-SSRs and an SSR-based linkage map
    • Yi G.B., Lee J.M., Lee S., Choi D., Kim B.D. Exploitation of pepper EST-SSRs and an SSR-based linkage map. Theor. Appl. Genet. 2006, 114:113-130.
    • (2006) Theor. Appl. Genet. , vol.114 , pp. 113-130
    • Yi, G.B.1    Lee, J.M.2    Lee, S.3    Choi, D.4    Kim, B.D.5
  • 42
    • 25444491205 scopus 로고    scopus 로고
    • High-resolution DNA melting analysis for simultaneous mutation scanning and genotyping in solution
    • Zhou L.M., Wang L., Palais R., Pryor R., Wittwer C.T. High-resolution DNA melting analysis for simultaneous mutation scanning and genotyping in solution. Clin. Chem. 2005, 51:1770-2177.
    • (2005) Clin. Chem. , vol.51 , pp. 1770-2177
    • Zhou, L.M.1    Wang, L.2    Palais, R.3    Pryor, R.4    Wittwer, C.T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.