Tdd8: A TerD domain-encoding gene involved in Streptomyces coelicolor differentiation

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 100, Issue 3, 2011, Pages 385-398

  Sanssouci, Édith ^a   Lerat, Sylvain ^a   Grondin, Gilles ^a   Shareck, François ^b   Beaulieu, Carole ^a  

^a UNIVERSITÉ DE SHERBROOKE   (Canada)

^b INRS INSTITUT ARMAND FRAPPIER   (Canada)

Author keywords

Actinomycetes; Development; Microscopy; Sporulation; Tellurite

Indexed keywords

BACTERIAL PROTEIN; POTASSIUM TELLURITE; PROTEIN TDD8; TELLURIUM DERIVATIVE; UNCLASSIFIED DRUG;

AGAR MEDIUM; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM CULTURE; CONCENTRATION RESPONSE; CONTROLLED STUDY; DELETION MUTANT; GENE FUNCTION; GENE IDENTIFICATION; GENE OVEREXPRESSION; GENE SEQUENCE; GENETIC RECOMBINATION; LIQUID CULTURE; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FUNCTION; REPORTER GENE; SEQUENCE HOMOLOGY; SERRATIA MARCESCENS; SPECIES DIFFERENTIATION; STREPTOMYCES COELICOLOR; TDD8 GENE; WILD TYPE;

BACTERIAL PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; SPORES, BACTERIAL; STREPTOMYCES COELICOLOR;

ACTINOBACTERIA (CLASS); SERRATIA MARCESCENS; STREPTOMYCES COELICOLOR;

EID: 80054112329     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9593-y     Document Type: Article

References (43)

1. DA Benson MS Boguski DJ Lipman J Ostell BFF Ouellette 1998 GenBank Nucleic Acids Res 26 1 7 9399790 10.1093/nar/26.1.1 1:CAS:528: DyaK1cXovVWlug%3D%3D (Pubitemid 28295262)
2. SD Bentley KF Chater AM Cerdeno-Tarraga, et al. 2002 Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) Nature 417 141 147 12000953 10.1038/417141a (Pubitemid 34506788)
3. TG Chasteen DE Fuentes JC Tantalean CC Vasquez 2009 Tellurite: history, oxidative stress, and molecular mechanisms of resistance FEMS Microbiol Rev 33 820 832 19368559 10.1111/j.1574-6976.2009.00177.x 1:CAS:528:DC%2BD1MXnslGhu7o%3D
4. D Claessen W de Jong L Dijkhuizen HA Wosten 2006 Regulation of Streptomyces development: reach for the sky! Trends Microbiol 14 313 319 16759865 10.1016/j.tim.2006.05.008 1:CAS:528:DC%2BD28XmsFSlt70%3D (Pubitemid 43983060)
5. Clinical and Laboratory Standards Institute (2006) Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobicall; approved standard, 7th edn. Clinical and Laboratory Standards Institute, Wayne
6. T Davidsen E Beck A Ganapathy R Montgomery N Zafar Q Yang R Madupu P Goetz K Galinsky O White G Sutton 2010 The comprehensive microbial resource Nucleic Acids Res 38 D340 D345 19892825 10.1093/nar/gkp912 1:CAS:528: DC%2BC3cXktlKlug%3D%3D
7. E De Boer AE Heuvelink 2000 Methods for the detection and isolation of Shiga toxin-producing Escherichia coli J Appl Microbiol 88 133S 143S (Pubitemid 30336122)
8. R De Mot G Schoofs I Nagy 2007 Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins Arch Microbiol 188 257 271 17486317 10.1007/s00203-007-0243-8 (Pubitemid 47228761)
9. RM Dedrick H Wildschutte JR McCormick 2009 Genetic interactions of smc, ftsK, and parB genes in Streptomyces coelicolor and their developmental genome segregation phenotypes J Bacteriol 191 320 332 18978061 10.1128/JB.00858-08 1:CAS:528:DC%2BD1MXoslChs7g%3D
10. F Denis R Brzezinski 1992 A versatile shuttle cosmid vector for use in Escherichia coli and actinomycetes Gene 111 115 118 1547947 10.1016/0378- 1119(92)90611-R 1:CAS:528:DyaK38XhvVyrsbk%3D
11. RC Fahey S Brody SD Mikolajczyk 1975 Changes in the glutathione thiol-disulfide status of Neurospora crassa conidia during germination and aging J Bacteriol 121 144 151 123243 1:CAS:528:DyaE2MXot1KktA%3D%3D
12. RD Finn J Tate J Mistry PC Coggill SJ Sammut H-R Hotz G Ceric K Forslund SR Eddy ELL Sonnhammer A Bateman 2008 The comprehensive microbial resource Nucleic Acids Res 36 D281 D288 18039703 10.1093/nar/gkm960 1:CAS:528: DC%2BD1cXhtVWiu7c%3D (Pubitemid 351149737)
13. G Gonzalez-Ceron P Licona L Servin-Gonzalez 2001 Modified xylE and xylTE reporter genes for use in Streptomyces: analysis of the effect of xylT FEMS Microbiol Lett 196 229 234 11267784 10.1016/S0378-1097(01)00073-8 1:CAS:528:DC%2BD3MXitVOnt7g%3D (Pubitemid 32232265)
14. U activity in Streptomyces coelicolor J Bacteriol 190 894 904 18065550 10.1128/JB.01759-07 1:CAS:528:DC%2BD1cXhsFSgsro%3D (Pubitemid 351170933)
15. B Gust GL Challis K Fowler T Kieser KF Chater 2003 PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin Proc Natl Acad Sci USA 100 1541 1546 12563033 10.1073/pnas.0337542100 1:CAS:528:DC%2BD3sXhsFGktrY%3D (Pubitemid 36254483)
16. M Kanehisa S Goto M Hattori KF Aoki-Kinoshita M Itoh S Kawashima T Katayama M Araki M Hirakawa 2006 From genomics to chemical genomics: new developments in KEGG Nucleic Acids Res 34 D354 D357 16381885 10.1093/nar/gkj102 1:CAS:528:DC%2BD28XisFyitw%3D%3D
17. CA Kay T Noce AS Tsang 1987 Translocation of an unusual cAMP receptor to the nucleus during development of Dictyostelium discoideum Proc Natl Acad Sci USA 84 2322 2326 3550809 10.1073/pnas.84.8.2322 1:CAS:528:DyaL2sXitFSrsr0%3D (Pubitemid 17075863)
18. Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical streptomyces genetics. John Innes Foundation, Norwich
19. DW Kim K Chater KJ Lee A Hesketh 2005 Changes in the extracellular proteome caused by the absence of the bldA gene product, a developmentally significant tRNA, reveal a new target for the pleiotropic regulator AdpA in Streptomyces coelicolor J Bacteriol 187 2957 2966 15838021 10.1128/JB.187.9. 2957-2966.2005 1:CAS:528:DC%2BD2MXjvVGqtrY%3D (Pubitemid 40571587)
20. R Kormutakova L Klucar J Turna 2000 DNA sequence analysis of the tellurite-resistance determinant from clinical strain of Escherichia coli and identification of essential genes Biometals 13 135 139 11016400 10.1023/A:1009272122989 1:CAS:528:DC%2BD3cXmvFKis78%3D
21. P Langlois S Bourassa GG Poirier C Beaulieu 2003 Identification of Streptomyces coelicolor proteins that are differentially expressed in the presence of plant material Appl Environ Microbiol 69 1884 1889 12676660 10.1128/AEM.69.4.1884-1889.2003 1:CAS:528:DC%2BD3sXivFKrurw%3D (Pubitemid 36443598)
22. Y Lu W Wang D Shu W Zhang L Chen Z Qin S Yang W Jiang 2007 Characterization of a novel two-component regulatory system involved in the regulation of both actinorhodin and a type I polyketide in Streptomyces coelicolor Appl Microbiol Biotechnol 77 625 635 17899070 10.1007/s00253-007- 1184-5 1:CAS:528:DC%2BD2sXht12ktL3F (Pubitemid 350125500)
23. A Manteca U Mader BA Connolly J Sanchez 2006 A proteomic analysis of Streptomyces coelicolor programmed cell death Proteomics 6 6008 6022 17051639 10.1002/pmic.200600147 1:CAS:528:DC%2BD28XhtlWgtL3N (Pubitemid 44851386)
24. A Manteca D Claessen C Lopez-Iglesias J Sanchez 2007 Aerial hyphae in surface cultures of Streptomyces lividans and Streptomyces coelicolor originate from viable segments surviving an early programmed cell death event FEMS Microbiol Lett 274 118 125 17663705 10.1111/j.1574-6968.2007.00825.x 1:CAS:528:DC%2BD2sXhtVSgtL7I (Pubitemid 47174317)
25. R and the thiol redox sensor anti-sigma factor RsrA Mol Microbiol 68 805 809 18430078 10.1111/j.1365-2958.2008.06222.x 1:CAS:528:DC%2BD1cXmtVWnu7s%3D (Pubitemid 351581072)
26. GL Newton K Arnold MS Price C Sherrill SB Delcardayre Y Aharonowitz G Cohen J Davies RC Fahey C Davis 1996 Distribution of thiols in microorganisms: mycothiol is a major thiol in most actinomycetes J Bacteriol 178 1990 1995 8606174 1:CAS:528:DyaK28XhvFOktr8%3D (Pubitemid 26110543)
27. J Novotna J Vohradsky P Berndt H Gramajo H Langen XM Li W Minas L Orsaria D Roeder CJ Thompson 2003 Proteomic studies of diauxic lag in the differentiating prokaryote Streptomyces coelicolor reveal a regulatory network of stress-induced proteins and central metabolic enzymes Mol Microbiol 48 1289 1303 12787356 10.1046/j.1365-2958.2003.03529.x 1:CAS:528:DC%2BD3sXkvVektbY%3D (Pubitemid 36718223)
28. R, an RNA polymerase sigma factor that modulates expression of the thioredoxin system in response to oxidative stress in Streptomyces coelicolor A3(2) EMBO J 17 5776 5782 9755177 10.1093/emboj/17.19.5776 1:CAS:528:DyaK1cXmvVyjsb4%3D (Pubitemid 28445988)
29. R in Streptomyces coelicolor Mol Microbiol 68 861 870 18430082 10.1111/j.1365-2958.2008.06191.x 1:CAS:528:DC%2BD1cXmtVWmsr8%3D (Pubitemid 351581056)
30. MW Pfaffl 2001 A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res 29 2002 2007 10.1093/nar/29.9.e45
31. A Piette A Derouaux P Gerkens EE Noens G Mazzucchelli S Vion HK Koerten F Titgemeyer E De Pauw P Leprince GP van Wezel M Galleni S Rigali 2005 From dormant to germinating spores of Streptomyces coelicolor A3(2): new perspectives from the crp null mutant J Proteome Res 4 1699 1708 16212423 10.1021/pr050155b 1:CAS:528:DC%2BD2MXhtVWmt77M (Pubitemid 41464797)
32. M Redenbach HM Kieser D Denapaite A Eichner J Cullum H Kinashi DA Hopwood 1996 A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome Mol Microbiol 21 77 96 8843436 10.1046/j.1365-2958.1996.6191336.x 1:CAS:528:DyaK28Xks1Gjtbc%3D (Pubitemid 26233084)
33. Sambrook J, Maniatis T, Fritsch EF (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor
34. B Setlow P Setlow 1977 Levels of acetyl coenzyme A, reduced and oxidized coenzyme A, and coenzyme A in disulfide linkage to protein in dormant and germinated spores and growing and sporulating cells of Bacillus megaterium J Bacteriol 132 444 452 410791 1:CAS:528:DyaE1cXivFGi (Pubitemid 8217384)
35. DE Taylor 1999 Bacterial tellurite resistance Trends Microbiol 7 111 115 10203839 10.1016/S0966-842X(99)01454-7 1:STN:280:DyaK1M3is1aqtA%3D%3D (Pubitemid 29271997)
36. DE Taylor M Rooker M Keelan LK Ng I Martin NT Perna NT Burland FR Blattner 2002 Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates J Bacteriol 184 4690 4698 12169592 10.1128/JB.184.17.4690-4698.2002 1:CAS:528:DC%2BD38Xmt12gurk%3D
37. F Touzain S Schbath I Debled-Rennesson B Aigle G Kucherov P Leblond 2008 SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics BMC Bioinformatics 9 73 18237374 10.1186/1471-2105-9-73 (Pubitemid 351420406)
38. AS Tsang M Tasaka 1986 Identification of multiple cyclic AMP-binding proteins in developing Dictyostelium discoideum cells J Biol Chem 261 10753 10759 3015938 1:CAS:528:DyaL28XkvFChtrc%3D (Pubitemid 17194862)
39. J Vohradsky CJ Thompson 2006 Systems level analysis of protein synthesis patterns associated with bacterial growth and metabolic transitions Proteomics 6 785 793 16400688 10.1002/pmic.200500206 1:CAS:528:DC%2BD28XhvFWkurw%3D (Pubitemid 43260204)
40. EG Walter DE Taylor 1992 Plasmid-mediated resistance to tellurite: expressed and cryptic Plasmid 27 52 64 1741460 10.1016/0147-619X(92)90006-V 1:CAS:528:DyaK38Xnslyqtw%3D%3D
41. KF Whelan E Colleran DE Taylor 1995 Phage inhibition, colicin resistance, and tellurite resistance are encoded by a single cluster of genes on the IncHI2 plasmid R478 J Bacteriol 177 5016 5027 7665479 1:CAS:528:DyaK2MXnvVCntbw%3D
42. G Wu DE Culley W Zhang 2005 Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism Microbiology 151 2175 2187 16000708 10.1099/mic.0.27833-0 1:CAS:528:DC%2BD2MXmvV2murw%3D (Pubitemid 40984291)
43. YH Yang E Song EJ Kim K Lee WS Kim SS Park JS Hahn BG Kim 2009 NdgR, an IclR-like regulator involved in amino-acid-dependent growth, quorum sensing, and antibiotic production in Streptomyces coelicolor Appl Microbiol Biotechnol 82 501 511 19083232 10.1007/s00253-008-1802-x 1:CAS:528:DC%2BD1MXhvFWqu74%3D