DNA barcoding of Canada's skates

Molecular Ecology Resources

Volumn 11, Issue 6, 2011, Pages 968-978

  Coulson, M W ^a,e   Denti, D ^a   Van Guelpen, L ^b   Miri, C ^c   Kenchington, E ^d   Bentzen, P ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b Huntsman Marine Science Centre   (Canada)

^c NORTHWEST ATLANTIC FISHERIES CENTRE   (Canada)

^d BEDFORD INSTITUTE OF OCEANOGRAPHY   (Canada)

^e MARINE LABORATORY   (United Kingdom)

Author keywords

DNA barcoding; Mitochondrial DNA; Rajidae; Skates

Indexed keywords

ANIMAL; ARTICLE; ATLANTIC OCEAN; BIOLOGICAL MODEL; CANADA; CLUSTER ANALYSIS; DNA BARCODING; DNA SEQUENCE; ELECTRIC FISH; GENETIC VARIABILITY; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE;

ANIMALS; ATLANTIC OCEAN; BASE SEQUENCE; CANADA; CLUSTER ANALYSIS; DNA BARCODING, TAXONOMIC; GENETIC VARIATION; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SKATES (FISH); SPECIES SPECIFICITY;

AMBLYRAJA; LEUCORAJA OCELLATA; RAJIDAE;

EID: 80054085038     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03034.x     Document Type: Article

References (41)

1. Bremer JRA, Frisk MG, Miller TJ, Turner J, Vinas J, Kwil K (2005) Genetic identification of cryptic juveniles of little skate and winter skate. Journal of Fish Biology, 66, 1177-1182.
2. Capetta H (1987) Chondrichthyes II. Mesazoic and Cenozoic Elasmobranchii. In: Handbook of Paleoichthyology (ed. Shultze HP), pp. 1-193. Gustav Fisher Verlag, New York.
3. Capetta H, Duffin C, Zidek J (1993) Chondrichthyes. In: The Fossil Record 2 (ed. Benton MJ), pp. 593-610. Chapman & Hall, London.
4. Casey JM, Myers RA (1998) Near extinction of a large widely distributed fish. Science, 281, 690-692.
5. Clare EL, Kerr KCR, von Konigslow TE, Wilson JJ, Hebert PDN (2008) Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach. Journal of Molecular Evolution, 66, 362-367.
6. De Astarloa JMD, Mabragana E, Hanner R, Figueroa DE (2008) Morphological and molecular evidence for a new species of longnose skate (Rajiformes: Rajidae: Dipturus) from Argentinean waters based on DNA barcoding. Zootaxa, 1921, 35-46.
7. Dulvy NK, Reynolds JD (2002) Predicting extinction vulnerability in skates. Conservation Biology, 16, 440-450.
8. Dulvy NK, Metcalfe JD, Glanville J, Pawson MG, Reynolds JD (2000) Fishery stability, local extinctions, and shifts in community structure in skates. Conservation Biology, 14, 283-293.
9. Dulvy NK, Baum JK, Clarke S et al. (2008) You can swim but you can't hide: the global status and conservation of oceanic pelagic sharks and rays. Aquatic Conservation - Marine and Freshwater Ecosystems, 18, 459-482.
10. Elphinstone MS, Hinten GN, Anderson MJ, Nock CJ (2003) An inexpensive and high-throughput procedure to extract and purify total genomic DNA for population studies. Molecular Ecology, 3, 317-320.
11. Figueiredo I, Moura T, Bordal-Machado P, Neves A, Rosa C, Gordo LS (2007) Evidence for temporal changes in ray and skate populations in the Portuguese coast (1998-2003) - its implications in the ecosystem. Aquatic Living Resources, 20, 85-93.
12. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003a) Biological identifications through DNA barcodes. Proceedings of the Royal Society Series B - Biological Sciences, 270, 313-321.
13. Hebert PDN, Ratnasingham S, deWaard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Philosophical Transactions of the Royal Society of London Series B - Biological Sciences, 270, S96-S99.
14. Holden MJ (1973) Are long-term sustainable fisheries for elasmobranches possible? Rapports Preces-verbaux Conseil Internationale pour l'Exploration de la Mer, 164, 360-370.
15. Holden MJ (1974) Problems in the rational exploitation of elasmobranch populations and some suggested solutions. In: Sea Fisheries Research (eds Harden Jones FR), pp. 117-138. Halstead Press, John Wiley and Sons, New York, NY.
16. Iglesias SP, Toulhoat L, Sellos DY (2009) Taxonomic confusion and market mislabeling of threatened skates: important consequences for their conservation status. Aquatic Conservation: Marine and Freshwater Ecosystems, 20, 319-333.
17. Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN (2007) Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7, 544-548.
18. Jeong C-H, Nakabo T (2009) Hongeo, a new skate genus (Chondrichthyes: Rajidae), with redescription of the type species. Ichthyological Research, 56, 140-155.
19. Jermin LS, Graur D, Lowe RM, Crozier RH (1994) Analysis of directional mutation pressure and nucleotide content in mitochondrial cytochrome b genes. Journal of Molecular Evolution, 39, 160-173.
20. Kimura M (1980) A simple method of estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Molecular Evolution, 16, 111-120.
21. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Bioinformatics, 5, 150-163.
22. Last PR, Stevens JD (1994) Sharks and Rays of Australia. CSIRO, Hobart, Tasmania, Australia.
23. McEachran JD, Dunn KA (1998) Phylogenetic analysis of skates, a morphologically conservative clade of elasmobranches (Chondrichthyes: Rajidae). Copeia, 1998, 271-290.
24. McEachran JD, Musick JA (1973) Characters for distinguishing between immature specimens of the sibling species, Raja erinacea and Raja ocellata (Pisces: Rajidae). Copeia, 1973, 238-250.
25. McPhie RP, Campana SE (2009) Reproductive characteristics and population decline of four species of skate (Rajidae) off the eastern coast of Canada. Journal of Fish Biology, 75, 223-246.
26. Min XJ, Hickey DA (2007) DNA barcodes provide a quick preview of mitochondrial genome composition. PLoS ONE, 2, e325.
27. NEFSC (2000) 30th Northeast Regional Stock Assessment Workshop (30th SAW), Stock Assessment Review Committee (SARC) Consensus summary of assessments. Northeast Fisheries Science Center Reference Document 00-03 NEFSC, Woods Hole, MA.
28. Nelson JS (1994) Fishes of the World, 3rd edn. New York, John Wiley and Sons.
29. Ratnasingham S, Hebert PDN (2007) BOLD: The Barcode of Life Data System (). Molecular Ecology Notes, 7, 355-364.
30. Saccone C, De Giorgi C, Gissi C, Pesole G, Reyes A (1999) Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene, 238, 195-209.
31. Scott WB, Scott MG (1988). Atlantic fishes of Canada. University of Toronto Press, Toronto.
32. Smith PJ, Steinke D, McVeagh SM, Stewart AL, Struthers CD, Roberts CD (2008) Molecular analysis of Southern Ocean skates (Bathyraja) reveals a new species of Antarctic skate. Journal of Fish Biology, 73, 1170-1182.
33. Spies IB, Gaichas S, Stevenson DE, Orr JW, Canino MF (2006) DNA-based identification of Alaska skates (Amblyraja, Bathyraja and Raja: Rajidae) using cytochrome c oxidase subunit I (COI) variation. Journal of Fish Biology, 69, 283-292.
34. Steinke D, Zemlak TS, Boutillier JA, Hebert PDN (2009) DNA barcoding of Pacific Canada's fishes. Marine Biology, 156, 2641-2647.
35. Stevens JD, Bonfil R, Dulvy NK, Walker PA (2000) The effects of fishing on sharks, rays, and chimaeras (chondrichthyans), and the implications for marine ecosystems. ICES Journal of Marine Science, 57, 476-494.
36. Sulak KJ, MacWhirter PD, Luke KE et al. (2009) Identification guide to skates (Family Rajidae) of the Canadian Atlantic and adjacent regions. Canadian Technical Report Fisheries and Aquatic Sciences, 2850, viii+34.
37. Valsecchi E, Pasolini P, Bertozzi M et al. (2005) Rapid Miocene-Pliocene dispersal and evolution of Mediterranean rajid fauna as inferred by mitochondrial gene variation. Journal of Evolutionary Biology, 18, 436-446.
38. Walker PA, Heesen HJL (1996) Long-term changes in ray populations in the North Sea. ICES Journal of Marine Science, 53, 1085-1093.
39. Ward RD (2009) DNA barcode divergence among species and genera of birds and fishes. Molecular Ecology Resources, 9, 1077-1085.
40. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Proceedings of the Royal Society of London Series B - Biological Sciences, 360, 1847-1857.
41. Ward RD, Holmes BH, White WT, Last PR (2008) DNA barcoding Australasian chondrichthyans: results and potential uses in conservation. Marine and Freshwater Research, 59, 57-71.