메뉴 건너뛰기




Volumn 39, Issue 18, 2011, Pages 7900-7907

A global insight into a cancer transcriptional space using pancreatic data: Importance, findings and flaws

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER CELL CULTURE; CANCER TISSUE; CANCER TRANSCRIPTIONAL SPACE; CONTROLLED STUDY; DATA ANALYSIS; DATA MINING; DISEASE ASSOCIATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC PARAMETERS; HISTOPATHOLOGY; HUMAN; HUMAN CELL; HUMAN TISSUE; INFORMATION PROCESSING; MAJOR CLINICAL STUDY; ONLINE SYSTEM; PANCREAS ADENOCARCINOMA; PANCREAS CANCER; PRIORITY JOURNAL; TUMOR XENOGRAFT;

EID: 80054052368     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr533     Document Type: Article
Times cited : (41)

References (36)
  • 2
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan, D. and Weinberg, R.A. (2000) The hallmarks of cancer. Cell, 100, 57-70. (Pubitemid 30046295)
    • (2000) Cell , vol.100 , Issue.1 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 6
    • 78650371571 scopus 로고    scopus 로고
    • Large scale comparison of global gene expression patterns in human and mouse
    • Zheng-Bradley, X., Rung, J., Parkinson, H. and Brazma, A. Large scale comparison of global gene expression patterns in human and mouse. Genome Biol., 11, R124.
    • Genome Biol. , vol.11
    • Zheng-Bradley, X.1    Rung, J.2    Parkinson, H.3    Brazma, A.4
  • 7
    • 39749183343 scopus 로고    scopus 로고
    • Analysis of mortality rates for pancreatic cancer across the world
    • DOI 10.1080/13651820701883148, PII 790805873
    • Hariharan, D., Saied, A. and Kocher, H.M. (2008) Analysis of mortality rates for pancreatic cancer across the world. HPB, 10, 58-62. (Pubitemid 351298114)
    • (2008) HPB , vol.10 , Issue.1 , pp. 58-62
    • Hariharan, D.1    Saied, A.2    Kocher, H.M.3
  • 8
    • 40849142105 scopus 로고    scopus 로고
    • Current status of gene expression profiling of pancreatic cancer
    • DOI 10.1016/j.ijsu.2006.09.001, PII S1743919106001877
    • Goonetilleke, K.S. and Siriwardena, A.K. (2008) Current status of gene expression profiling of pancreatic cancer. Int. J. Surg., 6, 81-83. (Pubitemid 351400446)
    • (2008) International Journal of Surgery , vol.6 , Issue.1 , pp. 81-83
    • Goonetilleke, K.S.1    Siriwardena, A.K.2
  • 13
    • 0020750980 scopus 로고
    • Percentage points for a generalized esd many-outlier procedure
    • Rosner, B. (1983) Percentage points for a generalized ESD many-outlier procedure. Technometrics, 25, 165-172. (Pubitemid 13540616)
    • (1983) Technometrics , vol.25 , Issue.2 , pp. 165-172
    • Rosner Bernard1
  • 14
    • 58049208277 scopus 로고    scopus 로고
    • Power enhancement via multivariate outlier testing with gene expression arrays
    • Asare, A.L., Gao, Z., Carey, V.J., Wang, R. and Seyfert-Margolis, V. (2009) Power enhancement via multivariate outlier testing with gene expression arrays. Bioinformatics, 25, 48-53.
    • (2009) Bioinformatics , vol.25 , pp. 48-53
    • Asare, A.L.1    Gao, Z.2    Carey, V.J.3    Wang, R.4    Seyfert-Margolis, V.5
  • 15
    • 2542610720 scopus 로고    scopus 로고
    • Preprocessing of oligonucleotide array data
    • author reply 658
    • Wu, Z. and Irizarry, R.A. (2004) Preprocessing of oligonucleotide array data. Nat. Biotechnol., 22, 656-658; author reply 658.
    • (2004) Nat. Biotechnol. , vol.22 , pp. 656-658
    • Wu, Z.1    Irizarry, R.A.2
  • 16
    • 77950395903 scopus 로고    scopus 로고
    • Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
    • Mieczkowski, J., Tyburczy, M.E., Dabrowski, M. and Pokarowski, P. (2010) Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements. BMC Bioinformatics, 11, 104.
    • (2010) BMC Bioinformatics , vol.11 , pp. 104
    • Mieczkowski, J.1    Tyburczy, M.E.2    Dabrowski, M.3    Pokarowski, P.4
  • 17
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth, G.K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, 1.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3 , pp. 1
    • Smyth, G.K.1
  • 18
    • 60849121964 scopus 로고    scopus 로고
    • Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia
    • Badea, L., Herlea, V., Dima, S.O., Dumitrascu, T. and Popescu, I. (2008) Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia. Hepatogastroenterology, 55, 2016-2027.
    • (2008) Hepatogastroenterology , vol.55 , pp. 2016-2027
    • Badea, L.1    Herlea, V.2    Dima, S.O.3    Dumitrascu, T.4    Popescu, I.5
  • 19
    • 77958516882 scopus 로고    scopus 로고
    • Glycogene expression alterations associated with pancreatic cancer epithelial-mesenchymal transition in complementary model systems
    • Maupin, K.A., Sinha, A., Eugster, E., Miller, J., Ross, J., Paulino, V., Keshamouni, V.G., Tran, N., Berens, M., Webb, C. et al. Glycogene expression alterations associated with pancreatic cancer epithelial-mesenchymal transition in complementary model systems. PLoS ONE, 5, e13002.
    • PLoS ONE , vol.5
    • Maupin, K.A.1    Sinha, A.2    Eugster, E.3    Miller, J.4    Ross, J.5    Paulino, V.6    Keshamouni, V.G.7    Tran, N.8    Berens, M.9    Webb, C.10
  • 20
    • 77950128955 scopus 로고    scopus 로고
    • Masitinib combined with standard gemcitabine chemotherapy: In vitro and in vivo studies in human pancreatic tumour cell lines and ectopic mouse model
    • Humbert, M., Casteran, N., Letard, S., Hanssens, K., Iovanna, J., Finetti, P., Bertucci, F., Bader, T., Mansfield, C.D., Moussy, A. et al. (2010) Masitinib combined with standard gemcitabine chemotherapy: in vitro and in vivo studies in human pancreatic tumour cell lines and ectopic mouse model. PLoS ONE, 5, e9430.
    • (2010) PLoS ONE , vol.5
    • Humbert, M.1    Casteran, N.2    Letard, S.3    Hanssens, K.4    Iovanna, J.5    Finetti, P.6    Bertucci, F.7    Bader, T.8    Mansfield, C.D.9    Moussy, A.10
  • 22
    • 34548019460 scopus 로고    scopus 로고
    • Zonal heterogeneity for gene expression in human pancreatic carcinoma
    • DOI 10.1158/0008-5472.CAN-07-0874
    • Nakamura, T., Kuwai, T., Kitadai, Y., Sasaki, T., Fan, D., Coombes, K.R., Kim, S.J. and Fidler, I.J. (2007) Zonal heterogeneity for gene expression in human pancreatic carcinoma. Cancer Res., 67, 7597-7604. (Pubitemid 47281351)
    • (2007) Cancer Research , vol.67 , Issue.16 , pp. 7597-7604
    • Nakamura, T.1    Kuwai, T.2    Kitadai, Y.3    Sasaki, T.4    Fan, D.5    Coombes, K.R.6    Kim, S.-J.7    Fidler, I.J.8
  • 24
    • 77953413882 scopus 로고    scopus 로고
    • Networking of differentially expressed genes in human cancer cells resistant to methotrexate
    • Selga, E., Oleaga, C., Ramirez, S., de Almagro, M.C., Noe, V. and Ciudad, C.J. (2009) Networking of differentially expressed genes in human cancer cells resistant to methotrexate. Genome Med., 1, 83.
    • (2009) Genome Med. , vol.1 , pp. 83
    • Selga, E.1    Oleaga, C.2    Ramirez, S.3    De Almagro, M.C.4    Noe, V.5    Ciudad, C.J.6
  • 29
    • 77952924233 scopus 로고    scopus 로고
    • Transcriptomics: Common disease pathogenesis pathways
    • Alderton, G.K. (2010) Transcriptomics: common disease pathogenesis pathways. Nat. Rev. Cancer, 10, 387.
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 387
    • Alderton, G.K.1
  • 32
    • 3042822267 scopus 로고    scopus 로고
    • Cancer and the chemokine network
    • Balkwill, F. (2004) Cancer and the chemokine network. Nat. Rev. Cancer, 4, 540-550. (Pubitemid 38868623)
    • (2004) Nature Reviews Cancer , vol.4 , Issue.7 , pp. 540-550
    • Balkwill, F.1
  • 35
    • 68449096481 scopus 로고    scopus 로고
    • Organotypic culture model of pancreatic cancer demonstrates that stromal cells modulate E-cadherin, beta-catenin, and Ezrin expression in tumor cells
    • Froeling, F.E., Mirza, T.A., Feakins, R.M., Seedhar, A., Elia, G., Hart, I.R. and Kocher, H.M. (2009) Organotypic culture model of pancreatic cancer demonstrates that stromal cells modulate E-cadherin, beta-catenin, and Ezrin expression in tumor cells. Am. J. Pathol., 175, 636-648.
    • (2009) Am. J. Pathol. , vol.175 , pp. 636-648
    • Froeling, F.E.1    Mirza, T.A.2    Feakins, R.M.3    Seedhar, A.4    Elia, G.5    Hart, I.R.6    Kocher, H.M.7
  • 36
    • 77951163222 scopus 로고    scopus 로고
    • Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology
    • Baggerly, K.A. and Coombes, K.R. (2009) Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology. Ann. Appl. Stat., 3, 1309-1334.
    • (2009) Ann. Appl. Stat. , vol.3 , pp. 1309-1334
    • Baggerly, K.A.1    Coombes, K.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.