Clones identification and genetic characterization of garnacha grapevine by means of different PCR-derived marker systems

Molecular Biotechnology

Volumn 48, Issue 3, 2011, Pages 244-254

  Meneghetti, Stefano ^a   Costacurta, Angelo ^a   Frare, Enrica ^a   Da Rold, Graziana ^a   Migliaro, Daniele ^a   Morreale, Giacomo ^a   Crespan, Manna ^a   Sotés, Vicente ^b   Calò, Antonio ^a  

^a ISTITUTO NAZIONALE DELLA NUTRIZIONE   (Italy)

^b UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

AFLP; Cannonau; Grenache; Intravarietal variability; M AFLP; SAMPL

Indexed keywords

DNA SEQUENCES; SAMPLING;

AFLP; CANNONAU; GRENACHE; INTRAVARIETAL VARIABILITY; M-AFLP;

CLONING;

MOLECULAR MARKER; MICROSATELLITE DNA; PLANT DNA;

ALLELE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CHIMERA; CLONE; CULTIVAR; FRANCE; GENE IDENTIFICATION; GENE LOCUS; GENETIC TRAIT; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC ORIGIN; GRAPE; ITALY; MICROSATELLITE MARKER; NONHUMAN; PLANT MORPHOLOGY; POLYMERASE CHAIN REACTION; SIMPLE SEQUENCE REPEAT; SPAIN; CLASSIFICATION; CLUSTER ANALYSIS; GENETIC MARKER; GENETICS; METHODOLOGY;

VITIS;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CLUSTER ANALYSIS; DNA, PLANT; GENETIC MARKERS; GENETIC VARIATION; ITALY; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; SPAIN; VITIS;

EID: 80054026323     PISSN: 10736085     EISSN: 15590305     Source Type: Journal    
DOI: 10.1007/s12033-010-9365-3     Document Type: Article

References (54)

1. Galet, P. (2000). Dictionnaire encyclopédique des cépages. Paris: Hachette.
2. a edicion, Ed. Madrid, 1645. Madrid.
3. Robinson, J. (2006). The Oxford companion to wine (3rd ed.). NY, USA: Oxford University Press.
4. Calo, A., & Costacurta, A. (2004). Dei vitigni italici. Treviso, Italy: Ed. Matteo.
5. Odart, G. (1874). Traitéde cépages. Paris: Librairie agricole.
6. Clarke, O. (2001). Encyclopedia of grapes (pp. 91-100). Orlando: Harcourt Books.
7. Gregutt, P. (2007). Washington wines and wineries: The essential guide (pp. 67-68). Berkeley, CA: University of California Press.
8. Galet, P. (1979). A practical ampelography: Grapevine identification. Ithaca, New York: University Press.
9. Levadoux, L. (1956). Les populations sauvages et cultivees de Vitis vinifera L. Ann. Amelior Plantes, 6, 59-118.
10. Costacurta, A., & Meneghetti, S. (2008). Evaluation of the intra-varietal variability for the clones identification (I). OIV Oral communication N. CI-GENET 03.2008.05.2. Organisation internationale de la vigne et du vin-Section Experts en Génétique, Paris, le 13 mars 2008.
11. Meneghetti, S., Costacurta, A., & Calò, A. (2009). Evaluation of the intra-varietal variability for the clones identification (II). OIV Oral communication N. CI-GENET 03.2009-07.1., Organisation internationale de la vigne et du vin-Section Experts en Géné-tique, Paris, le 18 mars 2009.
12. Wolf, W. H. (1976). Identification of grape varieties by isozyme banding patterns. American Journal of Enology and Viticulture, 27-2, 68-73.
13. Schwennesen, J., Mielke, E. A., & Wolfe, W. H. (1982). Identification of seedless table grape cultivars and a bud sport with berry isozymes. Hortscience, 17-3, 366-368.
14. Loukas, M., Stavrakakis, M. N., & Krimbas, C. B. (1983). Inheritance of polymorphic isoenzymes in grape cultivars. The Journal of Heredity, 74-3, 181-183.
15. Stavrakakis, M., & Loukas, M. (1983). The between and within grape cultivars genetic variation. Scientia Horticulturae, 19, 321-334.
16. Altube, H., Cabello, F., & Ortiz, J. M. (1991). Caracterizació n de variedades y portainjertos de vid mediante isoenzimas de los sarmientos. Vitis, 30, 203-212.
17. Chaparro, J. X., Goldy, R. G., Mowrey, B. D., & Werner, D. J. (1989). Identification of Vitis vinifera 9 Muscardinia rotundifo-lia small hybrids by starch gel electrophoresis. Hortscience, 24, 128-130.
18. Royo, J. B., Cabello, F., Miranda, S., Gogorcena, Y., González, J., Moreno, S., et al. (1997). The use of isoenzymes in characterization of grapevines (Vitis vinifera L.). Influence of the environment and time of sampling. Scientia Horticulturae, 69, 145-155. (Pubitemid 27269079)
19. Bachmann, K. (1994). Molecular markers in plant ecology. New Phytologist, 126, 403-418.
20. Bachmann, O., & Blaich, R. (1988). Isoeletric focusing of grapevine peroxidases as a tool for ampelography. Vitis, 27, 147-155.
21. de Mart́inez Toda, F., & Sancha, J. C. (1997). Ampelographical characterization of red Vitis vinifera L. cultivars preserved in Rioja. Bull de l'OIV, 70, 220-234.
22. Techera, G., Jubany, A., de Ponce León, S., Boido, I., Dellacassa, E., Carrau, E., et al. (2004). Molecular diversity (SSR) within clones of cv. Tannat (Vitis vinifera). Vitis, 43-44, 179-185. (Pubitemid 40118237)
23. Regner, F., Wiedeck, E., & Stadlbauer, A. (2000). Differentiation and identification of White Riesling clones by genetic markers. Vitis, 39-3, 103-107.
24. Moreno, S., Gogorcena, Y., & Ortiz, J. M. (1995). The use of RAPD markers for identification of cultivated grapevine (Vitis vinifera L.). Scientia Horticulturae, 62-4, 237-243.
25. Böhm, A., & Zyprian, E. (1998). RAPD marker in grapevine (Vitis spp.) similar to plant retrotransposons. Plant Cell Reports, 17-5, 415-421.
26. Cervera, M. T., Cabezas, J. A., Sancha, J. C., de Mart́inez Toda, F., & Martínez-Zapater, J. M. (1998). Application of AFLPs to the characterization of grapevine Vitis vinifera L. genetic resources. A case of study with accessions from Rioja. Theoretical and Applied Genetics, 97-1(2), 51-59. (Pubitemid 28371664)
27. Fanizza, G., Chaabane, R., Ricciardi, L., & Resta, P. (2003). Analysis of a spontaneous mutant and selected clones of cv. Italia (Vitis vinifera) by AFLP markers. Vitis, 42-1, 27-30. (Pubitemid 36408950)
28. Blaich, R., Konradi, J., Rühl, E., & Forneck, A. (2007). Assessing genetic variation among Pinot noir (Vitis vinifera L.) clones with AFLP markers. American Journal of Enology and Viticulture, 58-4, 526-529. (Pubitemid 351196589)
29. Wolf, T., Cabezas, J. A., & Mart́inez-Zapater, J. M. (2003). Genetic characterization of closely related rootstocks varieties based on AFLP and SAMPL markers. Acta Horticulturae, 603, 291-300.
30. Owens, C. L. (2003). SNP detection and genotyping in Vitis. Acta Horticulturae, 603, 139-140.
31. Labra, M., Imazio, S., Grassi, F., Rossoni, M., & Sala, F. (2004). Vine-1 retrotransposon-based sequence-specific amplified polymorphism for Vitis vinifera L. genotyping. Plant Breeding, 123-2, 180-185. (Pubitemid 38583769)
32. Imazio, S., Labra, M., Grassi, F., Winfield, M., Bardini, M., & Scienza, A. (2002). Molecular tools (SSR, AFLP, MSAP) for clone identification: The case of the grapevine cultivar 'Tram-iner'. Plant Breeding, 121-6, 531-535. (Pubitemid 36093140)
33. Pelsey, F., Schehrer, L., & Merdinoglu, D. (2002). Development of grapevine molecular markers based on retrotransposons. Acta Horticulturae, 603, 83-87.
34. D'Onofrio, C., De Lorenzis, G., Giordani, T., Natali, L., Sca-labrelli, G., & Cavallini, A. (2009). Retrotransposon-based molecular markers in grapevine species and cultivars identification and phylogenetic analysis. Acta Horticulturae (ISHS), 827, 45-52.
35. Arroyo-García, R., Ruiz-García, L., Bolling, L., Ocete, R., López, M. A., Arnold, C., et al. (2006). Multiple origins of cultivated grapevine (Vitis vinifera L. ssp. sativa) based on chloroplast DNA polymorphisms. Molecular Ecology, 15-12, 3707-3714. (Pubitemid 44564279)
36. Albertini, E., Porceddu, A., Marconi, G., Barcaccia, G., Pallottini, L., & Falcinelli, M. (2003). Microsatellite-AFLP for genetic mapping of complex polyploids. Genome, 46, 824-832. (Pubitemid 37481517)
37. Calò, A., Costacurta, A., Cancellier, S., & Forti, R. (1990). Garnacha, Grenache, Cannonao, Tocai rosso, un unico vitigno. Vignevini, 9, 45-48.
38. Meneghetti, S., Costacurta, A., Calò, A., Sotés, V., Giannetto, S., & Crespan, M. (2006). Investigation on Italian, Spanish and French Garnacha tinta genetic variability-a preliminary study. Oral communication at the XXIX OIV 2006 International Symposium, Logroño, 25-30 Junio, España.
39. Cretazzo, E., Meneghetti, S., De Andrés, M. T., Frare, E., Gaforio, L., & Cifre, J. (2010). Clone differentiation and varietal identification by means of SSR, AFLP, SAMPL and M-AFLP in order to assist the clonal selection of grapevine. The case of study of manto Negro, callet and Moll, authochthoous cultivar of Majorca. Annals of Applied Biology (Annali of Applied Biology), 157(2), 213-227.
40. Meneghetti, S., Costacurta, A., Crespan, M., Maul, E., Hack, R., & Regner, F. (2009). Deepening inside the homonyms of Wildbacher by means of SSR markers. Vitis, 48-3, 123-129.
41. Crespan, M. (2004). Evidence on the evolution of polymorphism of microsatellite markers in varieties of Vitis vinifera L. Theoretical and Applied Genetics, 108, 231-237. (Pubitemid 38162204)
42. Crespan, M. (2003). The parentage of Muscat of Hamburg. Vitis, 42(4), 193-197. (Pubitemid 38106512)
43. Bowers, J. E., Dangl, G. S., & Meredith, C. P. (1999). Development and characterization of additional microsatellite DNA markers for grape. American Journal of Enology and Viticulture, 53, 125-130.
44. Crespan, M., Cancellier, S., Chies, R., Giannetto, S., & Mene-ghetti, S. (2006). New hypothesis on Raboso veronese origin after its parents identification. Rivista di Viticulture e Enologia, 1, 3-12.
45. Barcaccia, G., Mazzuccato, A., Albertini, E., Zethof, J., Gerats, A., Pezzotti, M., et al. (1998). Inheritance of parthenogenesis in Poa pratensis L.: Auxin test and AFLP linkage analyses support monogenic control. Theoretical and Applied Genetics, 96, 74-82. (Pubitemid 28371666)
46. Meneghetti, S., Barcaccia, G., Paiero, P., & Lucchin, M. (2007). Genetic characterization of Salix alba L. and Salix fragilis L. by means of different PCR-derived marker systems. Plant Biosys-tems, 141-3, 283-291. (Pubitemid 350136367)
47. Barcaccia, G., Meneghetti, S., Albertini, E., Triest, L., & Luc-chin, M. (2003). Linkage mapping in tetraploid willows: Segregation of molecular markers and estimation of linkage phases support an allotetraploid structure for Salix alba 9 Salix fragilis interspecifc hybrids. Heredity, 90, 169-180. (Pubitemid 36380234)
48. Van Eijk, M., De Ruiter, M., Broekhof, J., & Peleman, J. (2001). Discovery and detection of polymorphic microsatellites by micro-satellite-AFLP. In Plant and animal genome IX conference, 143.
49. Dice, L. R. (1945). Measures of the amount of ecological association between species. Ecology, 26, 297-302.
50. Rohlf, F. J. (2000). Numerical taxonomy and multivariate analysis system. Version 2.1. Stony Brook, NY: State University of New York.
51. Powell, W., Machray, G. C., & Provan, J. (1996). Polymorphism revealed by simple sequence repeats. Trends in plant Science, 1, 215-222. (Pubitemid 27140937)
52. Franks, T., Botta, R., & Thomas, M. R. (2002). Chimerism in grapevines: Implications for cultivar identity, ancestry and genetic improvement. Theoretical and Applied Genetics, 104, 192-199. (Pubitemid 36065044)
53. de Mart́inez Toda, F., & Sancha, J. C. (1997). Diferenciacion de cultivares de vid (Vitis vinifera) conocidas como Graciano en Rioja mediante técnicas de taxonoḿia numérica. Viticultura y Enología Profesional, 49, 24-28.
54. Riaz, S., Garrison, K. E., Dangl, G. S., Boursiquot, J. M., & Meredith, C. (2002). Genetic divergence and chimerism within ancient asexually propagated winegrape cultivars. Journal of the American Society for Horticultural Science, 127, 508-514. (Pubitemid 34623442)