-
1
-
-
0032488962
-
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction
-
10.1006/jmbi.1997.1479, 9480776
-
Samudrala R, Moult J. An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction. J Mol Biol 1998, 275:895-916. 10.1006/jmbi.1997.1479, 9480776.
-
(1998)
J Mol Biol
, vol.275
, pp. 895-916
-
-
Samudrala, R.1
Moult, J.2
-
3
-
-
33845976703
-
An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure
-
Robertson TA, Varani G. An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure. Proteins 2007, 66:359-374.
-
(2007)
Proteins
, vol.66
, pp. 359-374
-
-
Robertson, T.A.1
Varani, G.2
-
4
-
-
64549119506
-
Predicting helix-helix interactions from residue contacts in membrane proteins
-
10.1093/bioinformatics/btp114, 2666818, 19244388
-
Lo A, Chiu YY, R dland EA, Lyu PC, Sung TY, Hsu WL. Predicting helix-helix interactions from residue contacts in membrane proteins. Bioinformatics 2009, 25:996. 10.1093/bioinformatics/btp114, 2666818, 19244388.
-
(2009)
Bioinformatics
, vol.25
, pp. 996
-
-
Lo, A.1
Chiu, Y.Y.2
R dland, E.A.3
Lyu, P.C.4
Sung, T.Y.5
Hsu, W.L.6
-
5
-
-
79952412527
-
Protein-protein interaction prediction via Collective Matrix Factorization
-
3003334, 21170175
-
Xu Q, W XE, Yang Q. Protein-protein interaction prediction via Collective Matrix Factorization. 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), ; 18-21 Dec. 2010 2010, 62-67. 3003334, 21170175.
-
(2010)
2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), ; 18-21 Dec. 2010
, pp. 62-67
-
-
Xu, Q.1
W., X.E.2
Yang, Q.3
-
7
-
-
4143064791
-
Moment-based prediction of DNA-binding proteins
-
10.1016/j.jmb.2004.05.058, 15312763
-
Ahmad S, Sarai A. Moment-based prediction of DNA-binding proteins. J Mol Biol 2004, 341:65-71. 10.1016/j.jmb.2004.05.058, 15312763.
-
(2004)
J Mol Biol
, vol.341
, pp. 65-71
-
-
Ahmad, S.1
Sarai, A.2
-
8
-
-
0032190305
-
Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape
-
Liang J, Edelsbrunner H, Fu P, Sudhakar PV, Subramaniam S. Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape. Proteins 1998, 33:1-17.
-
(1998)
Proteins
, vol.33
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
9
-
-
0032189626
-
Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins
-
10.1002/(SICI)1097-0134(19981001)33:1<18::AID-PROT2>3.0.CO;2-H, 9741841
-
Liang J, Edelsbrunner H, Fu P, Sudhakar PV, Subramaniam S. Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins. Proteins 1998, 33:18-29. 10.1002/(SICI)1097-0134(19981001)33:1<18::AID-PROT2>3.0.CO;2-H, 9741841.
-
(1998)
Proteins
, vol.33
, pp. 18-29
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
10
-
-
0344980731
-
Simplicial edge representation of protein structures and alpha contact potential with confidence measure
-
10.1002/prot.10442, 14635122
-
Li X, Hu CY, Liang J. Simplicial edge representation of protein structures and alpha contact potential with confidence measure. Proteins 2003, 53:792-805. 10.1002/prot.10442, 14635122.
-
(2003)
Proteins
, vol.53
, pp. 792-805
-
-
Li, X.1
Hu, C.Y.2
Liang, J.3
-
11
-
-
1842850600
-
Voronoi and Voronoi-related tessellations in studies of protein structure and interaction
-
Poupon A. Voronoi and Voronoi-related tessellations in studies of protein structure and interaction. Curr Opin Struc Biol 2004, 14:233-241.
-
(2004)
Curr Opin Struc Biol
, vol.14
, pp. 233-241
-
-
Poupon, A.1
-
12
-
-
66249114925
-
Defining and characterizing protein surface using alpha shapes
-
10.1002/prot.22301, 19089982
-
Albou LP, Schwarz B, Poch O, Wurtz JM, Moras D. Defining and characterizing protein surface using alpha shapes. Proteins 2009, 76:1-12. 10.1002/prot.22301, 19089982.
-
(2009)
Proteins
, vol.76
, pp. 1-12
-
-
Albou, L.P.1
Schwarz, B.2
Poch, O.3
Wurtz, J.M.4
Moras, D.5
-
13
-
-
77957808349
-
A Discriminatory Function for Prediction of Protein-DNA Interactions based on Alpha Shape Modeling
-
10.1093/bioinformatics/btq478, 20733060
-
Zhou W, Yan H. A Discriminatory Function for Prediction of Protein-DNA Interactions based on Alpha Shape Modeling. Bioinformatics 2010, 26:2541-2548. 10.1093/bioinformatics/btq478, 20733060.
-
(2010)
Bioinformatics
, vol.26
, pp. 2541-2548
-
-
Zhou, W.1
Yan, H.2
-
15
-
-
77955036815
-
Applying the Naive Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites
-
10.1093/bioinformatics/btq302, 20529890
-
Murakami Y, Mizuguchi K. Applying the Naive Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites. Bioinformatics 2010, 26:1841-1848. 10.1093/bioinformatics/btq302, 20529890.
-
(2010)
Bioinformatics
, vol.26
, pp. 1841-1848
-
-
Murakami, Y.1
Mizuguchi, K.2
-
18
-
-
84871671597
-
Computational Geometry Algorithms Library
-
Computational Geometry Algorithms Library. , http://www.cgal.org
-
-
-
-
19
-
-
17644392830
-
TM-align: a protein structure alignment algorithm based on the TM-score
-
10.1093/nar/gki524, 1084323, 15849316
-
Zhang Y, Skolnick J. TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res 2005, 33:2302-2309. 10.1093/nar/gki524, 1084323, 15849316.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2302-2309
-
-
Zhang, Y.1
Skolnick, J.2
-
20
-
-
77950296638
-
Relationship between periodic dinucleotides and the nucleosome structure revealed by alpha shape modeling
-
Zhou W, Yan H. Relationship between periodic dinucleotides and the nucleosome structure revealed by alpha shape modeling. Chemical Physics Letters 2010, 489:225-228.
-
(2010)
Chemical Physics Letters
, vol.489
, pp. 225-228
-
-
Zhou, W.1
Yan, H.2
-
21
-
-
0141912837
-
MySVM-Manual
-
University of Dortmund, Lehrstuhl Informatik 8
-
Rüping S. mySVM-Manual. 2000, University of Dortmund, Lehrstuhl Informatik 8., http://www-ai.cs.uni-dortmund.de/SOFTWARE/MYSVM/
-
(2000)
-
-
Rüping, S.1
|