-
1
-
-
85013312416
-
Tumor angiogenesis: Therapeutic implications
-
Folkman, J. Tumor angiogenesis: therapeutic implications N. Engl. J. Med. 1971, 285, 1182-1186
-
(1971)
N. Engl. J. Med.
, vol.285
, pp. 1182-1186
-
-
Folkman, J.1
-
2
-
-
33947732977
-
Angiogenesis: An organizing principle for drug discovery?
-
DOI 10.1038/nrd2115, PII NRD2115
-
Folkman, J. Angiogenesis: an organizing principle for drug discovery? Nat Rev Drug Discovery 2007, 6, 273-286 (Pubitemid 46505878)
-
(2007)
Nature Reviews Drug Discovery
, vol.6
, Issue.4
, pp. 273-286
-
-
Folkman, J.1
-
3
-
-
0031454617
-
Endostatin: An endogenous inhibitor of angiogenesis and tumor growth
-
DOI 10.1016/S0092-8674(00)81848-6
-
O'Reilly, M. S.; Boehm, T.; Shing, Y.; Fukai, N.; Vasios, G.; Lane, W. S.; Flynn, E.; Birkhead, J. R.; Olsen, B. R.; Folkman, J. Endostatin: an endogenous inhibitor of angiogenesis and tumor growth Cell 1997, 88, 277-285 (Pubitemid 28015876)
-
(1997)
Cell
, vol.88
, Issue.2
, pp. 277-285
-
-
O'Reilly, M.S.1
Boehm, T.2
Shing, Y.3
Fukai, N.4
Vasios, G.5
Lane, W.S.6
Flynn, E.7
Birkhead, J.R.8
Olsen, B.R.9
Folkman, J.10
-
4
-
-
0033979905
-
Canstatin, a novel matrix-derived inhibitor of angiogenesis and tumor growth
-
Kamphaus, G. D.; Colorado, P. C.; Panka, D. J.; Hopfer, H.; Ramchandran, R.; Torre, A.; Maeshima, Y.; Mier, J. W.; Sukhatme, V. P.; Kalluri, R. Canstatin, a novel matrix-derived inhibitor of angiogenesis and tumor growth J. Biol. Chem. 2000, 275, 1209
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 1209
-
-
Kamphaus, G.D.1
Colorado, P.C.2
Panka, D.J.3
Hopfer, H.4
Ramchandran, R.5
Torre, A.6
Maeshima, Y.7
Mier, J.W.8
Sukhatme, V.P.9
Kalluri, R.10
-
5
-
-
54149116062
-
Characterization of the anti-angiogenic properties of arresten, an [alpha] 1 [beta] 1 integrin-dependent collagen-derived tumor suppressor
-
Nyberg, P.; Xie, L.; Sugimoto, H.; Colorado, P.; Sund, M.; Holthaus, K.; Sudhakar, A.; Salo, T.; Kalluri, R. Characterization of the anti-angiogenic properties of arresten, an [alpha] 1 [beta] 1 integrin-dependent collagen-derived tumor suppressor Exp. Cell Res. 2008, 314, 3292-3305
-
(2008)
Exp. Cell Res.
, vol.314
, pp. 3292-3305
-
-
Nyberg, P.1
Xie, L.2
Sugimoto, H.3
Colorado, P.4
Sund, M.5
Holthaus, K.6
Sudhakar, A.7
Salo, T.8
Kalluri, R.9
-
6
-
-
0037016498
-
Tumstatin, an endothelial cell-specific inhibitor of protein synthesis
-
Maeshima, Y.; Sudhakar, A.; Lively, J. C.; Ueki, K.; Kharbanda, S.; Kahn, C. R.; Sonenberg, N.; Hynes, R. O.; Kalluri, R. Tumstatin, an endothelial cell-specific inhibitor of protein synthesis Science 2002, 295, 140
-
(2002)
Science
, vol.295
, pp. 140
-
-
Maeshima, Y.1
Sudhakar, A.2
Lively, J.C.3
Ueki, K.4
Kharbanda, S.5
Kahn, C.R.6
Sonenberg, N.7
Hynes, R.O.8
Kalluri, R.9
-
7
-
-
0037805549
-
Basement membranes: Structure, assembly and role in tumour angiogenesis
-
DOI 10.1038/nrc1094
-
Kalluri, R. Basement membranes: structure, assembly and role in tumour angiogenesis Nat. Rev. Cancer 2003, 3, 422-433 (Pubitemid 37328846)
-
(2003)
Nature Reviews Cancer
, vol.3
, Issue.6
, pp. 422-433
-
-
Kalluri, R.1
-
8
-
-
35748947260
-
Type IV collagen-derived angiogenesis inhibitors
-
DOI 10.1016/j.mvr.2007.05.005, PII S0026286207000751, Therapeutic Applications of Angiogenesis and Anti-angiogenesis
-
Mundel, T. M.; Kalluri, R. Type IV collagen-derived angiogenesis inhibitors Microvasc. Res. 2007, 74, 85-89 (Pubitemid 350051026)
-
(2007)
Microvascular Research
, vol.74
, Issue.2-3
, pp. 85-89
-
-
Mundel, T.M.1
Kalluri, R.2
-
9
-
-
20144379162
-
Endogenous inhibitors of angiogenesis
-
Nyberg, P.; Xie, L.; Kalluri, R. Endogenous inhibitors of angiogenesis Cancer Res. 2005, 65, 3967
-
(2005)
Cancer Res.
, vol.65
, pp. 3967
-
-
Nyberg, P.1
Xie, L.2
Kalluri, R.3
-
10
-
-
52949084316
-
A systematic methodology for proteome-wide identification of peptides inhibiting the proliferation and migration of endothelial cells
-
Karagiannis, E. D.; Popel, A. S. A systematic methodology for proteome-wide identification of peptides inhibiting the proliferation and migration of endothelial cells Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 13775-13780
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 13775-13780
-
-
Karagiannis, E.D.1
Popel, A.S.2
-
11
-
-
4644236059
-
A theoretical model of type I collagen proteolysis by matrix metalloproteinase (MMP) 2 and membrane type 1 MMP in the presence of tissue inhibitor of metalloproteinase 2
-
DOI 10.1074/jbc.M403627200
-
Karagiannis, E. D.; Popel, A. S. A theoretical model of type I collagen proteolysis by matrix metalloproteinase (MMP) 2 and membrane type 1 MMP in the presence of tissue inhibitor of metalloproteinase 2 J. Biol. Chem. 2004, 279, 39105-39114 (Pubitemid 39296073)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.37
, pp. 39105-39114
-
-
Karagiannis, E.D.1
Popel, A.S.2
-
12
-
-
34249666657
-
Anti-angiogenic peptides identified in thrombospondin type I domains
-
DOI 10.1016/j.bbrc.2007.05.041, PII S0006291X07010054
-
Karagiannis, E. D.; Popel, A. S. Anti-angiogenic peptides identified in thrombospondin type I domains Biochem. Biophys. Res. Commun. 2007, 359, 63-69 (Pubitemid 46839218)
-
(2007)
Biochemical and Biophysical Research Communications
, vol.359
, Issue.1
, pp. 63-69
-
-
Karagiannis, E.D.1
Popel, A.S.2
-
13
-
-
34748905971
-
Peptides derived from type I thrombospondin repeat-containing proteins of the CCN family inhibit proliferation and migration of endothelial cells
-
DOI 10.1016/j.biocel.2007.06.018, PII S1357272507002154
-
Karagiannis, E. D.; Popel, A. S. Peptides derived from type I thrombospondin repeat-containing proteins of the CCN family inhibit proliferation and migration of endothelial cells Int. J. Biochem. Cell Biol. 2007, 39, 2314-2323 (Pubitemid 47484285)
-
(2007)
International Journal of Biochemistry and Cell Biology
, vol.39
, Issue.12
, pp. 2314-2323
-
-
Karagiannis, E.D.1
Popel, A.S.2
-
14
-
-
46949106434
-
Novel anti-angiogenic peptides derived from ELR-containing CXC chemokines
-
DOI 10.1002/jcb.21712
-
Karagiannis, E. D.; Popel, A. S. Novel anti-angiogenic peptides derived from ELR-containing CXC chemokines J. Cell. Biochem. 2008, 104, 1356-1363 (Pubitemid 351961706)
-
(2008)
Journal of Cellular Biochemistry
, vol.104
, Issue.4
, pp. 1356-1363
-
-
Karagiannis, E.D.1
Popel, A.S.2
-
15
-
-
72949109758
-
Peptides derived from type IV collagen, CXC chemokines, and thrombospondin-1 domain-containing proteins inhibit neovascularization and suppress tumor growth in MDA-MB-231 breast cancer xenografts
-
Koskimaki, J. E.; Karagiannis, E. D.; Rosca, E. V.; Vesuna, F.; Winnard, P. T., Jr.; Raman, V.; Bhujwalla, Z. M.; Popel, A. S. Peptides derived from type IV collagen, CXC chemokines, and thrombospondin-1 domain-containing proteins inhibit neovascularization and suppress tumor growth in MDA-MB-231 breast cancer xenografts Neoplasia 2009, 11, 1285-1291
-
(2009)
Neoplasia
, vol.11
, pp. 1285-1291
-
-
Koskimaki, J.E.1
Karagiannis, E.D.2
Rosca, E.V.3
Vesuna, F.4
Winnard Jr., P.T.5
Raman, V.6
Bhujwalla, Z.M.7
Popel, A.S.8
-
16
-
-
77349108622
-
Pentastatin-1, a collagen IV derived 20-mer peptide, suppresses tumor growth in a small cell lung cancer xenograft model
-
Koskimaki, J. E.; Karagiannis, E. D.; Tang, B. C.; Hammers, H.; Watkins, D. N.; Pili, R.; Popel, A. S. Pentastatin-1, a collagen IV derived 20-mer peptide, suppresses tumor growth in a small cell lung cancer xenograft model BMC Cancer 2010, 10, 29
-
(2010)
BMC Cancer
, vol.10
, pp. 29
-
-
Koskimaki, J.E.1
Karagiannis, E.D.2
Tang, B.C.3
Hammers, H.4
Watkins, D.N.5
Pili, R.6
Popel, A.S.7
-
17
-
-
68349117234
-
A peptide derived from type 1 thrombospondin repeat-containing protein WISP-1 inhibits corneal and choroidal neovascularization
-
Cano Mdel, V.; Karagiannis, E. D.; Soliman, M.; Bakir, B.; Zhuang, W.; Popel, A. S.; Gehlbach, P. L. A peptide derived from type 1 thrombospondin repeat-containing protein WISP-1 inhibits corneal and choroidal neovascularization Invest. Ophthalmol. Visual Sci. 2009, 50, 3840-3845
-
(2009)
Invest. Ophthalmol. Visual Sci.
, vol.50
, pp. 3840-3845
-
-
Cano Mdel, V.1
Karagiannis, E.D.2
Soliman, M.3
Bakir, B.4
Zhuang, W.5
Popel, A.S.6
Gehlbach, P.L.7
-
18
-
-
79960006764
-
Anti-angiogenic peptides for cancer therapeutics
-
Rosca, E. V.; Koskimaki, J. E.; Rivera, C. G.; Pandey, N. B.; Tamiz, A. P.; Popel, A. S. Anti-angiogenic peptides for cancer therapeutics Curr. Pharm. Biotechnol. 2011, 12, 1101-1116
-
(2011)
Curr. Pharm. Biotechnol.
, vol.12
, pp. 1101-1116
-
-
Rosca, E.V.1
Koskimaki, J.E.2
Rivera, C.G.3
Pandey, N.B.4
Tamiz, A.P.5
Popel, A.S.6
-
19
-
-
33845868822
-
PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results
-
DOI 10.1007/s10822-006-9087-6
-
Dixon, S. L.; Smondyrev, A. M.; Knoll, E. H.; Rao, S. N.; Shaw, D. E.; Friesner, R. A. PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results J. Comput.-Aided Mol. Des. 2006, 20, 647-671 (Pubitemid 46023928)
-
(2006)
Journal of Computer-Aided Molecular Design
, vol.20
, Issue.10-11
, pp. 647-671
-
-
Dixon, S.L.1
Smondyrev, A.M.2
Knoll, E.H.3
Rao, S.N.4
Shaw, D.E.5
Friesner, R.A.6
-
20
-
-
48449086927
-
PharmaGist: A webserver for ligand-based pharmacophore detection
-
Schneidman-Duhovny, D.; Dror, O.; Inbar, Y.; Nussinov, R.; Wolfson, H. J. PharmaGist: a webserver for ligand-based pharmacophore detection Nucleic Acids Res. 2008, 36, W223-228
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 223-228
-
-
Schneidman-Duhovny, D.1
Dror, O.2
Inbar, Y.3
Nussinov, R.4
Wolfson, H.J.5
-
21
-
-
0003675575
-
-
Ed. International Universit Line: La Jolla, CA.
-
Güner, O. F., Ed. Pharmacophore Perception, Development, and Use in Drug Design; International Universit Line: La Jolla, CA, 1999.
-
(1999)
Pharmacophore Perception, Development, and Use in Drug Design
-
-
Güner, O.F.1
-
22
-
-
0033606988
-
New 4-point pharmacophore method for molecular similarity and diversity applications: Overview of the method and applications, including a novel approach to the design of combinatorial libraries containing privileged substructures
-
DOI 10.1021/jm9806998
-
Mason, J. S.; Morize, I.; Menard, P. R.; Cheney, D. L.; Hulme, C.; Labaudiniere, R. F. New 4-point pharmacophore method for molecular similarity and diversity applications: overview of the method and applications, including a novel approach to the design of combinatorial libraries containing privileged substructures J. Med. Chem. 1999, 42, 3251-3264 (Pubitemid 29409714)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.17
, pp. 3251-3264
-
-
Mason, J.S.1
Morize, I.2
Menard, P.R.3
Cheney, D.L.4
Hulme, C.5
Labaudiniere, R.F.6
-
23
-
-
26844473590
-
Introduction: A Review of QSAR Methodology
-
In; Topliss, J. G. Academic Press: New York.
-
Blankley, C. Introduction: A Review of QSAR Methodology. In Quantitative Structure-Activity Relationships of Drugs; Topliss, J. G., Ed.; Academic Press: New York, 1983.
-
(1983)
Quantitative Structure-Activity Relationships of Drugs
-
-
Blankley, C.1
-
24
-
-
33645923096
-
Computational methods in developing quantitative structure-activity relationships (QSAR): A review
-
Dudek, A. Z.; Arodz, T.; Galvez, J. Computational methods in developing quantitative structure-activity relationships (QSAR): a review Comb. Chem. High Throughput Screening 2006, 9, 213-228
-
(2006)
Comb. Chem. High Throughput Screening
, vol.9
, pp. 213-228
-
-
Dudek, A.Z.1
Arodz, T.2
Galvez, J.3
-
26
-
-
0028046665
-
Variable selection in QSAR studies. I. An evolutionary algorithm
-
Kubiny, H. Variable selection in QSAR studies. I. An evolutionary algorithm Quant. Struct.-Act. Relat. 1994, 13, 285-294
-
(1994)
Quant. Struct.-Act. Relat.
, vol.13
, pp. 285-294
-
-
Kubiny, H.1
-
27
-
-
52049120108
-
New descriptors of amino acids and their application to peptide QSAR study
-
Lin, Z. H.; Long, H. X.; Bo, Z.; Wang, Y. Q.; Wu, Y. Z. New descriptors of amino acids and their application to peptide QSAR study Peptides 2008, 29, 1798-1805
-
(2008)
Peptides
, vol.29
, pp. 1798-1805
-
-
Lin, Z.H.1
Long, H.X.2
Bo, Z.3
Wang, Y.Q.4
Wu, Y.Z.5
-
28
-
-
59749104185
-
Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities
-
Zhou, P.; Chen, X.; Shang, Z. Side-chain conformational space analysis (SCSA): a multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities J. Comput.-Aided Mol. Des. 2009, 23, 129-141
-
(2009)
J. Comput.-Aided Mol. Des.
, vol.23
, pp. 129-141
-
-
Zhou, P.1
Chen, X.2
Shang, Z.3
-
29
-
-
0036589852
-
Additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201
-
DOI 10.1021/pr015513z
-
Doytchinova, I. A.; Blythe, M. J.; Flower, D. R. Additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A* 0201 J. Proteome Res. 2002, 1, 263-272 (Pubitemid 36050256)
-
(2002)
Journal of Proteome Research
, vol.1
, Issue.3
, pp. 263-272
-
-
Doytchinova, I.A.1
Blythe, M.J.2
Flower, D.R.3
-
30
-
-
84947924189
-
Geometric Manipulation of Flexible Ligands
-
Applied Computational Geometry: Towards Geometric Engineering
-
Finn, P.; Halperin, D.; Kavraki, L.; Latombe, J. C.; Motwani, R.; Shelton, C.; Venkatasubramanian, S. Geometric manipulation of flexible ligands Appl. Comput. Geom. Geom. Eng. 1996, 67-78 (Pubitemid 126140147)
-
(1996)
Lecture notes in Computer Science
, Issue.1148
, pp. 67-78
-
-
Finn, P.W.1
Halperin, D.2
Kavraki, L.E.3
Latombe, J.-C.4
Motwani, R.5
Shelton, C.6
Venkatasubramanian, S.7
-
31
-
-
85194972808
-
Regression shrinkage and selection via the Lasso
-
Tibshirani, R. Regression shrinkage and selection via the Lasso J. R. Stat. Soc., Ser. B 1994, 58, 267-288
-
(1994)
J. R. Stat. Soc., Ser. B
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
32
-
-
0037361983
-
Assessing model fit by cross-validation
-
Hawkins, D. M.; Basak, S. C.; Mills, D. Assessing model fit by cross-validation J. Chem. Inf. Comput. Sci. 2003, 43, 579-586
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 579-586
-
-
Hawkins, D.M.1
Basak, S.C.2
Mills, D.3
-
33
-
-
42949124873
-
Mammalian collagen IV
-
DOI 10.1002/jemt.20564
-
Khoshnoodi, J.; Pedchenko, V.; Hudson, B. G. Mammalian collagen IV Microsc. Res. Tech. 2008, 71, 357-370 (Pubitemid 351620858)
-
(2008)
Microscopy Research and Technique
, vol.71
, Issue.5
, pp. 357-370
-
-
Khoshnoodi, J.1
Pedchenko, V.2
Hudson, B.G.3
-
34
-
-
0035805614
-
Identification of the anti-angiogenic site within vascular basement membrane-derived tumstatin
-
Maeshima, Y.; Manfredi, M.; Reimer, C.; Holthaus, K. A.; Hopfer, H.; Chandamuri, B. R.; Kharbanda, S.; Kalluri, R. Identification of the anti-angiogenic site within vascular basement membrane-derived tumstatin J. Biol. Chem. 2001, 276, 15240-15248
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15240-15248
-
-
Maeshima, Y.1
Manfredi, M.2
Reimer, C.3
Holthaus, K.A.4
Hopfer, H.5
Chandamuri, B.R.6
Kharbanda, S.7
Kalluri, R.8
-
35
-
-
54449094358
-
Identification of amino acids essential for the antiangiogenic activity of tumstatin and its use in combination antitumor activity
-
Eikesdal, H. P.; Sugimoto, H.; Birrane, G.; Maeshima, Y.; Cooke, V. G.; Kieran, M.; Kalluri, R. Identification of amino acids essential for the antiangiogenic activity of tumstatin and its use in combination antitumor activity Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 15040
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 15040
-
-
Eikesdal, H.P.1
Sugimoto, H.2
Birrane, G.3
Maeshima, Y.4
Cooke, V.G.5
Kieran, M.6
Kalluri, R.7
-
36
-
-
70349497161
-
The endothelial cell tube formation assay on basement membrane turns 20: State of the science and the art
-
Arnaoutova, I.; George, J.; Kleinman, H. K.; Benton, G. The endothelial cell tube formation assay on basement membrane turns 20: state of the science and the art Angiogenesis 2009, 12, 267-274
-
(2009)
Angiogenesis
, vol.12
, pp. 267-274
-
-
Arnaoutova, I.1
George, J.2
Kleinman, H.K.3
Benton, G.4
-
37
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani, R. Regression shrinkage and selection via the lasso J. R. Stat. Soc., Ser. B 1996, 58, 267-288
-
(1996)
J. R. Stat. Soc., Ser. B
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
38
-
-
36849072045
-
Graph implementations for nonsmooth convex programs
-
Grant, M.; Boyd, S. Graph implementations for nonsmooth convex programs Recent Adv. Learn. Control 2008, 95-110
-
(2008)
Recent Adv. Learn. Control
, pp. 95-110
-
-
Grant, M.1
Boyd, S.2
-
39
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T.; Taylor, W. R.; Thornton, J. M. The rapid generation of mutation data matrices from protein sequences Comput. Appl. Biosci. 1992, 8, 275
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
|