Characterisation and natural variation of a dehydrin gene in Quercus petraea (Matt.) Liebl.

Plant Biology

Volumn 13, Issue 6, 2011, Pages 881-887

  Vornam, B ^a   Gailing, O ^a,b   Derory, J ^c   Plomion, C ^c   Kremer, A ^c   Finkeldey, R ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

^c UMR 1202 BIOGECO   (France)

Author keywords

Cold; Dehydrin; Drought; Sessile oak; SNPs

Indexed keywords

DEHYDRIN PROTEINS, PLANT; PLANT DNA; VEGETABLE PROTEIN;

ALLELE; BIOCHEMICAL COMPOSITION; DECIDUOUS TREE; GENE EXPRESSION; GENETIC DIFFERENTIATION; PERENNIAL PLANT; PROTEIN; SAMPLING; SEASONAL VARIATION; SESSILE SPECIES; SURVIVAL;

ALLELE; ALTITUDE; AMINO ACID SUBSTITUTION; ARTICLE; CHEMISTRY; COLD; DNA SEQUENCE; DROUGHT; FRANCE; GENE EXPRESSION REGULATION; GENETIC POLYMORPHISM; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OAK; PHYSIOLOGICAL STRESS; PHYSIOLOGY; PROMOTER REGION;

ALLELES; ALTITUDE; AMINO ACID SUBSTITUTION; BASE SEQUENCE; COLD TEMPERATURE; DNA, PLANT; DROUGHTS; FRANCE; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; POLYMORPHISM, GENETIC; PROMOTER REGIONS, GENETIC; QUERCUS; SEQUENCE ANALYSIS, DNA; STRESS, PHYSIOLOGICAL;

FRANCE; PYRENEES;

QUERCUS PETRAEA;

EID: 80053907963     PISSN: 14358603     EISSN: 14388677     Source Type: Journal    
DOI: 10.1111/j.1438-8677.2011.00446.x     Document Type: Article

References (34)

1. Allagulova C.R., Gimalov F.R., Shakirova F.M., Vakhitov V.A. (2003) The plant dehydrins: structure and putative functions. Biochemistry - Moscow, 68, 945-951.
2. Benedict C., Skinner J.S., Meng R., Chang Y.J., Bhalerao R., Huner N.P.A., Finn C.E., Chen T.H.H., Hurry V. (2006) The CBF1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in Populus spp. Plant, Cell and Environment, 29, 1259-1272.
3. Campbell S.A., Close T.J. (1997) Dehydrins: genes, proteins, and associations with phenotypic traits. New Phytologist, 137, 61-74.
4. Choi D.W., Zhu B., Close T.J. (1999) The barley (Hordeum vulgare L.) dehydrin multigene family: sequences, allele types, chromosome assignments, and expression characteristics of 11 Dhn genes of cv Dicktoo. Theoretical and Applied Genetics, 98, 1234-1247.
5. Close T.J. (1996) Dehydrins: emergence of a biochemical role of a family of plant dehydration proteins. Physiologia Plantarum, 97, 795-803.
6. Close T.J. (1997) Dehydrins: a commonality in the response of plants to dehydration and low temperature. Physiologia Plantarum, 100, 291-296.
7. Derory J., Leger P., Garcia V., Schaeffer J., Hauser M.T., Salin F., Luschnig C., Plomion C., Glossl J., Kremer A. (2006) Transcriptome analysis of bud burst in sessile oak (Quercus petraea). New Phytologist, 170, 723-738.
8. Ducousso A., Guyon J.P., Kremer A. (1996) Latitudinal and altitudinal variation of bud burst in western populations of sessile oak (Quercus petraea (Matt) Liebl). Annales Des Sciences Forestieres, 53, 775-782.
9. Gailing O., Vornam B., Leinemann L., Finkeldey R. (2009) Genetic and genomic approaches to assess adaptive genetic variation in plants: forest trees as a model. Physiologia Plantarum, 137, 509-519.
10. Hall T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
11. Higo K., Ugawa Y., Iwamoto M., Korenaga T. (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Research, 27, 297-300.
12. Ingram J., Bartels D. (1996) The molecular basis of dehydration tolerance in plants. Annual Review of Plant Physiology and Plant Molecular Biology, 47, 377-403.
13. Ismail A.M., Hall A.E., Close T.J. (1999) Allelic variation of a dehydrin gene cosegregates with chilling tolerance during seedling emergence. Proceedings of the National Academy of Sciences USA, 96, 13566-13570.
14. Katzman S., Barrett C., Thiltgen G., Karchin R., Karplus K. (2008) PREDICT-2ND: a tool for generalized protein local structure prediction. Bioinformatics, 24, 2453-2459.
15. Koag M.C., Wilkens S., Fenton R.D., Resnik J., Vo E., Close T.J. (2009) The K-Segment of Maize DHN1 mediates binding to anionic phospholipid vesicles and concomitant structural changes. Plant Physiology, 150, 1503-1514.
16. Kosová K., Vitamvas P., Prasil I.T. (2007) The role of dehydrins in plant response to cold. Biologia Plantarum, 51, 601-617.
17. Lecharny A., Boudet N., Gy I., Aubourg S., Kreis M. (2003) Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure. Journal of Structural and Functional Genomics, 3, 111-116.
18. Natali L., Giordani T., Cavallini A. (2003) Sequence variability of a dehydrin gene within Helianthus annuus. Theoretical and Applied Genetics, 106, 811-818.
19. Prestridge D.S. (1991) Signal Scan - a Computer-Program that Scans DNA Sequences for Eukaryotic Transcriptional Elements. Computer Applications in the Biosciences, 7, 203-206.
20. Puhakainen T., Hess M.W., Makela P., Svensson J., Heino P., Palva E.T. (2004) Overexpression of multiple dehydrin genes enhances tolerance to freezing stress in Arabidopsis. Plant Molecular Biology, 54, 743-753.
21. Renaut J., Hoffmann L., Hausman J.F. (2005) Biochemical and physiological mechanisms related to cold acclimation and enhanced freezing tolerance in poplar plantlets. Physiologia Plantarum, 125, 82-94.
22. Rorat T. (2006) Plant dehydrins - Tissue location, structure and function. Cellular and Molecular Biology Letters, 11, 536-556.
23. Rozas J., Sanchez-Del Barrio J.C., Messeguer X., Rozas R. (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
24. Ruttink T., Arend M., Morreel K., Storme V., Rombauts S., Fromm J., Bhalerao R.P., Boerjan W., Rohde A. (2007) A molecular timetable for apical bud formation and dormancy induction in poplar. The Plant Cell, 19, 2370-2390.
25. Sambrook J., Fritsch E.F., Maniatis T. (1989) Molecular cloning: a laboratory manual, 2nd edition. Cold Spring Harbor Laboratory Press, Plainview, New York.
26. Shinozaki K., Yamaguchi-Shinozaki K. (2000) Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Current Opinion in Plant Biology, 3, 217-223.
27. Shinozaki K., Yamaguchi-Shinozaki K., Seki M. (2003) Regulatory network of gene expression in the drought and cold stress responses. Current Opinion in Plant Biology, 6, 410-417.
28. Svensson J.T., Ismail A., Palva E.T., Close T.J. (2002) Dehydrins. In: Storey K.B., Storey J.M. (Eds), Sensing, signalling and cell adaptation. Elsevier, Amsterdam, pp 155-171.
29. Thompson J.D., Higgins D.G., Gibson T.J. (1994) Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
30. Wachowiak W., Balk P.A., Savolainen O. (2009) Search for nucleotide diversity patterns of local adaptation in dehydrins and other cold-related candidate genes in Scots pine (Pinus sylvestris L.). Tree Genetics and Genomes, 5, 117-132.
31. Weiser C.J. (1970) Cold Resistance and Injury in Woody Plants. Science, 169, 1269-1278.
32. Welling A., Rinne P., Vihera-Aarnio A., Kontunen-Soppela S., Heino P., Palva E.T. (2004) Photoperiod and temperature differentially regulate the expression of two dehydrin genes during overwintering of birch (Betula pubescens Ehrh.). Journal of Experimental Botany, 55, 507-516.
33. Wright S. (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.
34. Yakovlev I.A., Asante D.K.A., Fossdal C.G., Partanen J., Junttila O., Johnsen O. (2008) Dehydrins expression related to timing of bud burst in Norway spruce. Planta, 228, 459-472.