Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance

PLoS ONE

Volumn 6, Issue 10, 2011, Pages

  Liu, Zhong Jian ^a,b,c   Chen, Li Jun ^a   Chen, Sing Chi ^a,d   Cai, Jing ^a   Tsai, Wen Chieh ^e   Hsiao, Yu Yun ^e   Rao, Wen Hui ^a   Ma, Xue Yong ^a   Zhang, Guo Qiang ^a  

^a The National Orchid Conservation Center of China   (China)

^b TSINGHUA UNIVERSITY   (China)

^c SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^d INSTITUTE OF BOTANY   (China)

^e NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER; SPACER DNA;

AERIDES; ARTICLE; CHLOROPLAST GENOME; CLADISTICS; CONTROLLED STUDY; GENETIC DISTANCE; GENETIC VARIABILITY; GENOME ANALYSIS; GEOGRAPHICAL VARIATION (SPECIES); HOLCOGLOSSUM AMESIANUM; HOLCOGLOSSUM FLAVESCENS; HOLCOGLOSSUM KIMBALLIANUM; HOLCOGLOSSUM LINEARIFOLIUM; HOLCOGLOSSUM NUJIANGENSE; HOLCOGLOSSUM OMEIENSE; HOLCOGLOSSUM QUASIPINIFOLIUM; HOLCOGLOSSUM RUPESTRE; HOLCOGLOSSUM SINICUM; HOLCOGLOSSUM SUBULIFOLIUM; HOLCOGLOSSUM TSII; HOLCOGLOSSUM WANGII; HOLCOGLOSSUM WEIXIENSE; INFRASPECIFIC RANK; MATK GENE; MOLECULAR PHYLOGENY; MORPHOLOGICAL TRAIT; NEW GENUS; NONHUMAN; ORCHIDACEAE; PARAHOLCOGLOSSUM; PARSIMONY ANALYSIS; PLANT GENE; PLANT GENOME; RHYNCHOSTYLIS; SPECIES DIFFERENTIATION; TAXONOMIC IDENTIFICATION; TRNL F GENE; TSIORCHIS; VANDA; BAYES THEOREM; CHLOROPLAST GENE; CLASSIFICATION; DNA SEQUENCE; GENETICS; HISTOLOGY; PHYLOGENY; STATISTICAL MODEL;

AERIDES; AERIDINAE; HOLCOGLOSSUM; RHYNCHOSTYLIS;

BAYES THEOREM; DNA, INTERGENIC; GENES, CHLOROPLAST; LIKELIHOOD FUNCTIONS; ORCHIDACEAE; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 80053895718     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0024864     Document Type: Article

References (26)

1. Jin XH, Wood JJ, (2009) Holcoglossum. In: Wu ZY, Raven PH, editors. Flora of China, vol. 25 pp. 499-502 Science Press, Beijing & Missouri Botanical Garden Press, St. Louis.
2. Schlechter R, (1919) Orchideologiae Sino-Japonicae Prodromus. Feddes Repert Spec Nov Regni Veg Beih 4: 285.
3. Garay LA, (1972) On the systematics of the monopodial orchids I. Bot Mus Leafl 23: 149-212.
4. Tsi ZH, (1982) A study of the genus Holcoglossum of Orchidaceae. Acta Phytotax Sin 20: 439-444.
5. Christenson EA, (1987) An infrageneric classification of Holcoglossum Schltr. (Orchidaceae: Sarcanthinae) with a key to the genera of the Aerides-Vanda alliance. Notes Roy Bot Gard Edinburgh 44: 249-256.
6. Seidenfaden G, (1988) The orchid genera in Thailand XIV. Fifty-nine vandoid genera. Opera Bot 95: 304-308.
7. Seidenfaden G, (1992) The orchids of Indochina. Opera Bot 114: 441-443.
8. Jin XH, (2005) Generic delimitation and a new infrageneric system in the genus Holcoglossum (Orchidaceae: Aeridinae). J Linn Soc Bot 149: 465-468.
9. Fan J, Qin HN, Li DZ, Jin XH, (2009) Molecular phylogeny and biogeography of Holcoglossum (Orchidaceae: Aeridinae) based on nuclear ITS, and chloroplast trnL-F and matK. Taxon 3: 849-861.
10. Christenson EA, (1998) Two new species of Holcoglossum Schltr. (Orchidaceae: Aeridinae) from China. Lindleyana 13: 121-124.
11. Marcin G, Ovidiu P, Mark WC, (2010) Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results. Molec Phylog Evol 56: 784-795.
12. Cameron KM, Chase MW, Whitten WM, Kores PJ, Jarrell DC, et al. (1999) A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences. Amer J Bot 86: 208-224.
13. Chase MW, Cameron KM, Hills H, Jarrell D, (1994) DNA sequences and phylogenetics of the Orchidaceae and other lilioid monocots. In: Pridgeon A, editors. pp. 61-73 Proceedings of the Fourteenth World Orchid Conference. Her Majesty's Stationery Office, Glasgow, UK.
14. Freudenstein JV, van den Berg C, Goldman DH, Kores PJ, Molvray M, et al. (2004) An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy. Amer J Bot 91: 149-157.
15. Cameron KM, (2004) Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae. Molec Phylog Evol 31: 1157-1180.
16. Nuebig KM, Whitten WM, Carlsward BS, Blanco MA, Endara L, et al. (2009) Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK. Pl Syst Evol 277: 75-84.
17. Topik H, Yukawa T, Ito M, (2005) Molecular phylogenetics of subtribe Aeridinae (Orchidaceae): insights from plastid matK and nuclear ribosomal ITS sequences. J Pl Res 118: 271-284.
18. Carlsward BS, Whitten WM, Williams NH, Bytebier B, (2006) Molecular phylogenetics of Vandeae (Orchidaceae) and the evolution of leaflessness. Amer J Bot 93: 770-786.
19. Mike T, Lena S, Joachim WK, (1999) The phylogenetic relationships and evolution of the Canarian laurel forest endemic Ixanthus viscosus (Aiton) Griseb. (Gentianaceae): evidence from matK and ITS sequences, and floral morphology and anatomy. Pl Syst Evol 218: 299-317.
20. Taberlet P, Gielly L, Pautou G, Bouvet J, (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl Molec Biol 17: 1105-1109.
21. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution doi:10.1093/molbev/msr121.
22. Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
23. Swofford DL, (2002) PAUP*: Phylogenetic Analysis using Parsimony (* and Other Methods), version 4.0b10. Sinauer, Sunderland.
24. Stamatakis A, Hoover P, Rougemont J, (2008) A rapid bootstrap algorithm for the RAxML Web-Servers. Systematic Biology 75 (5): 758-771.
25. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
26. McNeill J, Barrie FR, Burdet HM, Demoulin V, Hawksworth DL, et al. (2006) International Code of Botanical Nomenclature (Vienna Code). Regnum Vegetabile 146. A. R. G. Gantner Verlang KG, Liechtenstecin. Electronic version at International Association for Plant Taxonomy website. Available: http://ibot.sav.sk/icbn/main.htm (Accessed 2011 Sep. 5).