Carboxydothermus islandicus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic bacterium isolated from a hot spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 10, 2011, Pages 2532-2537

  Novikov, Andrey A ^a   Sokolova, Tatyana G ^b   Lebedinsky, Alexander V ^b   Kolganova, Tatyana V ^c   Bonch Osmolovskaya, Elizaveta A ^b  

^a GUBKIN RUSSIAN STATE UNIVERSITY OF OIL AND GAS   (Russian Federation)

^b WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^c RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; CARBON DIOXIDE; FATTY ACID; HYDROGEN; PYRUVIC ACID; RNA 16S;

ANAEROBIC FERMENTATION; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CARBOXYDOTHERMUS ISLANDICUS; CHEMOLITHOTROPH; DNA BASE COMPOSITION; FATTY ACID ANALYSIS; GENE SEQUENCE; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; THERMAL SPRING; THERMOPHILIC BACTERIUM; TYPE STRAIN; YEAST;

ANAEROBIOSIS; CARBON DIOXIDE; CARBON MONOXIDE; CHEMOAUTOTROPHIC GROWTH; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; GRAM-POSITIVE BACTERIA; HOT SPRINGS; HOT TEMPERATURE; HYDROGEN; HYDROGEN-ION CONCENTRATION; ICELAND; LACTATES; LOCOMOTION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PYRUVIC ACID; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CARBOXYDOTHERMUS;

EID: 80053647655     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.030288-0     Document Type: Article

References (23)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Birnboim, H. C. & Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7, 1513-1523.
3. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
4. Gregersen, T. (1978). Rapid method for distinction of Gram-negative fromGram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
5. Kevbrin, V. V. & Zavarzin, G. A. (1992). Effect of sulfur compounds on the growth of the halophilic homoacetic bacterium Acetohalobium arabaticum. Mikrobiologiia 61, 812-817.
6. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester, UK: Wiley.
7. Owen, R. J., Hill, L. R. & Lapage, S. P. (1969). Determination of DNA base compositions from melting profiles in dilute buffers. Biopolymers 7, 503-516.
8. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
9. Slepova, T. V., Sokolova, T. G., Kolganova, T. V., Tourova, T. P. & Bonch-Osmolovskaya, E. A. (2009). Carboxydothermus siderophilus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic, dissimilatory Fe(III)-reducing bacterium from a Kamchatka hot spring. Int J Syst Evol Microbiol 59, 213-217.
10. Slobodkin, A. I., Reysenbach, A.-L., Strutz, N., Dreier, M. & Wiegel, J. (1997). Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring. Int J Syst Bacteriol 47, 541-547.
11. Slobodkin, A. I., Sokolova, T. G., Lysenko, A. M. & Wiegel, J. (2006). Reclassification of Thermoterrabacterium ferrireducens as Carboxydothermus ferrireducens comb. nov., and emended description of the genus Carboxydothermus. Int J Syst Evol Microbiol 56, 2349-2351.
12. Sokolova, T. G., Kostrikina, N. A., Chernyh, N. A., Tourova, T. P., Kolganova, T. V. & Bonch-Osmolovskaya, E. A. (2002). Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring. Int J Syst Evol Microbiol 52, 1961-1967.
13. Sokolova, T. G., Hanel, J., Onyenwoke, R. U., Reysenbach, A.-L., Banta, A., Geyer, R., Gonza ́ lez, J. M., Whitman, W. B. & Wiegel, J. (2007). Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov. Extremophiles 11, 145-157.
14. Sokolova, T. G., Henstra, A. M., Sipma, J., Parshina, S. N., Stams, A. J. M. & Lebedinsky, A. V. (2009). Diversity and ecophysiological features of thermophilic carboxydotrophic anaerobes. FEMS Microbiol Ecol 68, 131-141.
15. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155. http://www.sgm.ac.uk/pubs/micro_today/pdf/110602.pdf
16. Svetlichny, V. A., Sokolova, T. G., Gerhardt, M., Ringpfeil, M., Kostrikina, N. A. & Zavarzin, G. A. (1991). Carboxydothermus hydrogenoformans gen. nov., sp. nov., a CO-utilizing thermophilic anaerobic bacterium from hydrothermal environments of Kunashir Island. Syst Appl Microbiol 14, 254-260.
17. Svetlichny, V.A., Sokolova, T.G., Kostrikina, N. A. & Lysenko, A.M. (1994). Carboxydothermus restrictus sp. nov. - a new thermophilic anaerobic carboxydotrophic bacterium. Mikrobiologiya 63, 523-528 (in Russian).
18. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
19. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
20. Tindall, B. J., Rosselló-Mó ra, R., Busse, H.-J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
21. Trüper, H. G. & Schlegel, H. G. (1964). Sulfur metabolism in Thiorhodaceae. I. Quantitative measurements on growing cells of Chromatium okenii. Antonie van Leeuwenhoek 30, 225-238.
22. Wolin, E. A., Wolin, M. J. & Wolfe, R. S. (1963). Formation of methane by bacterial extracts. J Biol Chem 238, 2882-2886.
23. Wu, M., Ren, Q., Durkin, A. S., Daugherty, S. C., Brinkac, L. M., Dodson, R. J., Madupu, R., Sullivan, S. A., Kolonay, J. F. & other authors (2005). Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. PLoS Genet 1, e65.