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Volumn 12, Issue SUPPL. 9, 2011, Pages

On the weight of indels in genomic distances

Author keywords

[No Author keywords available]

Indexed keywords

POLYNOMIAL APPROXIMATION;

EID: 80053517192     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-S9-S13     Document Type: Article
Times cited : (13)

References (12)
  • 1
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    • Transforming men into mice (polynomial algorithm for genomic distance problem)
    • Hannenhalli S, Pevzner P. Transforming men into mice (polynomial algorithm for genomic distance problem). Proc. of FOCS 1995, 1995:581-592.
    • (1995) Proc. of FOCS , vol.1995 , pp. 581-592
    • Hannenhalli, S.1    Pevzner, P.2
  • 2
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • 10.1093/bioinformatics/bti535, 15951307
    • Yancopoulos S, Attie O, Friedberg R. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 2005, 21:3340-3346. 10.1093/bioinformatics/bti535, 15951307.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3
  • 4
    • 77958067329 scopus 로고    scopus 로고
    • The solution space of sorting by DCJ
    • 10.1089/cmb.2010.0109, 20874401
    • Braga MDV, Stoye J. The solution space of sorting by DCJ. Journal of Computational Biology 2010, 17(9):1145-1165. 10.1089/cmb.2010.0109, 20874401.
    • (2010) Journal of Computational Biology , vol.17 , Issue.9 , pp. 1145-1165
    • Braga, M.D.V.1    Stoye, J.2
  • 5
    • 0033391532 scopus 로고    scopus 로고
    • Genome rearrangement with gene families
    • 10.1093/bioinformatics/15.11.909, 10743557
    • Sankoff D. Genome rearrangement with gene families. Bioinformatics 1999, 15(11):909-917. 10.1093/bioinformatics/15.11.909, 10743557.
    • (1999) Bioinformatics , vol.15 , Issue.11 , pp. 909-917
    • Sankoff, D.1
  • 6
    • 4544335270 scopus 로고    scopus 로고
    • The complexity of calculating exemplar distances
    • Sankoff D, Nadeau JH
    • Bryant D. The complexity of calculating exemplar distances. Comparative Genomics 2000, 207-212. Sankoff D, Nadeau JH.
    • (2000) Comparative Genomics , pp. 207-212
    • Bryant, D.1
  • 8
    • 84856832577 scopus 로고    scopus 로고
    • Genome rearrangements with duplications
    • 10.1186/1471-2105-11-S1-S27, 3026374, 20946611
    • Bader M. Genome rearrangements with duplications. BMC Bioinformatics 2010, 11(Suppl 1):S27. 10.1186/1471-2105-11-S1-S27, 3026374, 20946611.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 1
    • Bader, M.1
  • 9
    • 0344794387 scopus 로고    scopus 로고
    • Sorting Signed Permutations by Reversals and Insertions/Deletions of Contiguous Segments
    • El-Mabrouk N. Sorting Signed Permutations by Reversals and Insertions/Deletions of Contiguous Segments. Journal of Discrete Algorithms 2001, 1:105-122.
    • (2001) Journal of Discrete Algorithms , vol.1 , pp. 105-122
    • El-Mabrouk, N.1
  • 10
    • 80052638701 scopus 로고    scopus 로고
    • Double Cut and Join with Insertions and Deletions
    • DOI: 10.1089/cmb.2011.0118, 10.1089/cmb.2011.0118, 21899423
    • Braga MDV, Willing E, Stoye J. Double Cut and Join with Insertions and Deletions. Journal of Computational Biology 2011, 18:1167-1184. DOI: 10.1089/cmb.2011.0118, 10.1089/cmb.2011.0118, 21899423.
    • (2011) Journal of Computational Biology , vol.18 , pp. 1167-1184
    • Braga, M.D.V.1    Willing, E.2    Stoye, J.3
  • 11
    • 80053523144 scopus 로고    scopus 로고
    • Genomic distance under gene substitutions
    • doi:10.1186/1471-2105-12-S9-S8, 3044316, 21342591
    • Braga MDV, Machado R, Ribeiro LC, Stoye J. Genomic distance under gene substitutions. BMC Bioinformatics 2011, 12(Suppl 9):S8. doi:10.1186/1471-2105-12-S9-S8, 3044316, 21342591.
    • (2011) BMC Bioinformatics , vol.12 , Issue.SUPPL. 9
    • Braga, M.D.V.1    Machado, R.2    Ribeiro, L.C.3    Stoye, J.4
  • 12
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    • DCJ path formulation for genome transformations which include insertions, deletions, and duplications
    • 10.1089/cmb.2009.0092, 19803734
    • Yancopoulos S, Friedberg R. DCJ path formulation for genome transformations which include insertions, deletions, and duplications. Journal of Computational Biology 2009, 16(10):1311-1338. 10.1089/cmb.2009.0092, 19803734.
    • (2009) Journal of Computational Biology , vol.16 , Issue.10 , pp. 1311-1338
    • Yancopoulos, S.1    Friedberg, R.2


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