-
1
-
-
0034882101
-
The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms
-
Mattick J, Gagen M. The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms. Molecular Biology and Evolution 2001, 18(9):1611-1630.
-
(2001)
Molecular Biology and Evolution
, vol.18
, Issue.9
, pp. 1611-1630
-
-
Mattick, J.1
Gagen, M.2
-
3
-
-
30744475434
-
The origins of eukaryotic gene structure
-
Lynch M. The origins of eukaryotic gene structure. Molecular Biology and Evolution 2006, 23(2):450-468.
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.2
, pp. 450-468
-
-
Lynch, M.1
-
4
-
-
0037630627
-
Introns in gene evolution
-
Fedorova L, Fedorov A. Introns in gene evolution. Genetica 2003, 118(2-3):123-131.
-
(2003)
Genetica
, vol.118
, Issue.2-3
, pp. 123-131
-
-
Fedorova, L.1
Fedorov, A.2
-
5
-
-
2342540912
-
The ever-increasing complexities of the exon junction complex
-
10.1016/j.ceb.2004.03.012, 15145352
-
Tange T, Nott A, Moore M. The ever-increasing complexities of the exon junction complex. Current Opinion in Cell Biology 2004, 16(3):279-284. 10.1016/j.ceb.2004.03.012, 15145352.
-
(2004)
Current Opinion in Cell Biology
, vol.16
, Issue.3
, pp. 279-284
-
-
Tange, T.1
Nott, A.2
Moore, M.3
-
6
-
-
0037406116
-
A quantitative analysis of intron effects on mammalian gene expression
-
10.1261/rna.5250403, 1370426, 12702819
-
Nott A, Meislin S, Moore M. A quantitative analysis of intron effects on mammalian gene expression. RNA 2003, 9:607-617. 10.1261/rna.5250403, 1370426, 12702819.
-
(2003)
RNA
, vol.9
, pp. 607-617
-
-
Nott, A.1
Meislin, S.2
Moore, M.3
-
7
-
-
0037407941
-
Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells
-
10.1261/rna.5260303, 1370427, 12702820
-
Lu S, Cullen B. Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells. RNA 2003, 9:618-630. 10.1261/rna.5260303, 1370427, 12702820.
-
(2003)
RNA
, vol.9
, pp. 618-630
-
-
Lu, S.1
Cullen, B.2
-
8
-
-
79953020169
-
Critical association of ncRNA with introns
-
10.1093/nar/gkq1080, 3064772, 21071396
-
Rearick D, Prakash A, McSweeny A, Shepard S, Fedorova L, Fedorov A. Critical association of ncRNA with introns. Nucleic Acids Research 2011, 39(6):2357-2366. 10.1093/nar/gkq1080, 3064772, 21071396.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.6
, pp. 2357-2366
-
-
Rearick, D.1
Prakash, A.2
McSweeny, A.3
Shepard, S.4
Fedorova, L.5
Fedorov, A.6
-
9
-
-
42049118334
-
Intron delays and transcriptional timing during development
-
10.1016/j.devcel.2008.02.002, 2825037, 18331713
-
Swinburne I, Silver P. Intron delays and transcriptional timing during development. Developmental cell 2008, 14(3):324-330. 10.1016/j.devcel.2008.02.002, 2825037, 18331713.
-
(2008)
Developmental cell
, vol.14
, Issue.3
, pp. 324-330
-
-
Swinburne, I.1
Silver, P.2
-
10
-
-
56949089071
-
Oscillating signaling pathways during embryonic development
-
10.1016/j.ceb.2008.09.002, 18845254
-
Aulehla APO. Oscillating signaling pathways during embryonic development. Current Opinion in Cell Biology 2008, 20(6):632-637. 10.1016/j.ceb.2008.09.002, 18845254.
-
(2008)
Current Opinion in Cell Biology
, vol.20
, Issue.6
, pp. 632-637
-
-
Aulehla, A.P.O.1
-
11
-
-
79952766407
-
Intronic delay is essential for oscillatory expression in the segmentation clock
-
10.1073/pnas.1014418108, 3044385, 21300886
-
Takashima Y, Ohtsuka T, González A, Miyachi H, Kageyama R. Intronic delay is essential for oscillatory expression in the segmentation clock. Proceedings of the National Academy of Sciences of the United States of America 2011, 108(8):3300-3305. 10.1073/pnas.1014418108, 3044385, 21300886.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, Issue.8
, pp. 3300-3305
-
-
Takashima, Y.1
Ohtsuka, T.2
González, A.3
Miyachi, H.4
Kageyama, R.5
-
12
-
-
0035887251
-
Dynamic expression and essential functions of Hes7 in somite segmentation
-
10.1101/gad.930601, 312810, 11641270
-
Bessho Y, Sakata R, Komatsu S, Shiota K, Yamada S, Kageyama R. Dynamic expression and essential functions of Hes7 in somite segmentation. Genes and Development 2001, 15(20):2642-2647. 10.1101/gad.930601, 312810, 11641270.
-
(2001)
Genes and Development
, vol.15
, Issue.20
, pp. 2642-2647
-
-
Bessho, Y.1
Sakata, R.2
Komatsu, S.3
Shiota, K.4
Yamada, S.5
Kageyama, R.6
-
13
-
-
0035984002
-
HairyE/(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish
-
Oates A, Ho R. HairyE/(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. Development 2002, 129(12):2929-2946.
-
(2002)
Development
, vol.129
, Issue.12
, pp. 2929-2946
-
-
Oates, A.1
Ho, R.2
-
14
-
-
70350743147
-
Expression of the oscillating gene her1 is directly regulated by hairy/enhancer of split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock
-
10.1002/dvdy.22100, 2943421, 19795510
-
Brend T, Holley S. Expression of the oscillating gene her1 is directly regulated by hairy/enhancer of split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock. Developmental Dynamics 2009, 238(11):2745-2759. 10.1002/dvdy.22100, 2943421, 19795510.
-
(2009)
Developmental Dynamics
, vol.238
, Issue.11
, pp. 2745-2759
-
-
Brend, T.1
Holley, S.2
-
15
-
-
78651305141
-
OrthoDB: The hierarchical catalog of eukaryotic orthologs in 2011
-
3013786, 20972218
-
Waterhouse R, Zdobnov E, Tegenfeldt F, Li J, Kriventseva E. OrthoDB: The hierarchical catalog of eukaryotic orthologs in 2011. Nucleic Acids Research 2011, 39(SUPPL. 1):D283-D288. 3013786, 20972218.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
Waterhouse, R.1
Zdobnov, E.2
Tegenfeldt, F.3
Li, J.4
Kriventseva, E.5
-
16
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
10.1093/nar/gkn923, 2615629, 19033363
-
Huang D, Sherman B, Lempicki R. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Research 2009, 37:1-13. 10.1093/nar/gkn923, 2615629, 19033363.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 1-13
-
-
Huang, D.1
Sherman, B.2
Lempicki, R.3
-
17
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang D, Sherman B, Lempicki R. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 2009, 4:44-57.
-
(2009)
Nature Protocols
, vol.4
, pp. 44-57
-
-
Huang, D.1
Sherman, B.2
Lempicki, R.3
-
18
-
-
0034800374
-
InterProScan - An integration platform for the signature-recognition methods in InterPro
-
10.1093/bioinformatics/17.9.847, 11590104
-
Zdobnov EAR, Apweiler R. InterProScan - An integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17(9):847-848. 10.1093/bioinformatics/17.9.847, 11590104.
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 847-848
-
-
Zdobnov, E.A.R.1
Apweiler, R.2
-
19
-
-
33644652318
-
" Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison
-
10.1101/gr.4318206, 1415212, 16461636
-
Vinogradov A. " Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison. Genome Research 2006, 16(3):347-354. 10.1101/gr.4318206, 1415212, 16461636.
-
(2006)
Genome Research
, vol.16
, Issue.3
, pp. 347-354
-
-
Vinogradov, A.1
-
20
-
-
77951083459
-
Major role for mRNA stability in shaping the kinetics of gene induction
-
10.1186/1471-2164-11-259, 2864252, 20409322
-
Elkon R, Zlotorynski E, Zeller K, Agami R. Major role for mRNA stability in shaping the kinetics of gene induction. BMC Genomics 2010, 11:259. 10.1186/1471-2164-11-259, 2864252, 20409322.
-
(2010)
BMC Genomics
, vol.11
, pp. 259
-
-
Elkon, R.1
Zlotorynski, E.2
Zeller, K.3
Agami, R.4
-
21
-
-
0036699596
-
Selection for short introns in highly expressed genes
-
Castillo-Davis C, Mekhedov S, Hartl D, Koonin E, Kondrashov F. Selection for short introns in highly expressed genes. Nature Genetics 2002, 31(4):415-418.
-
(2002)
Nature Genetics
, vol.31
, Issue.4
, pp. 415-418
-
-
Castillo-Davis, C.1
Mekhedov, S.2
Hartl, D.3
Koonin, E.4
Kondrashov, F.5
-
22
-
-
79955407832
-
Real-time observation of transcription initiation and elongation on an endogenous yeast gene
-
10.1126/science.1202142, 3152976, 21512033
-
Larson D, Zenklusen D, Wu B, Chao J, Singer R. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science 2011, 332(6028):475-478. 10.1126/science.1202142, 3152976, 21512033.
-
(2011)
Science
, vol.332
, Issue.6028
, pp. 475-478
-
-
Larson, D.1
Zenklusen, D.2
Wu, B.3
Chao, J.4
Singer, R.5
-
23
-
-
35548988487
-
The transcriptional cycle of HIV-1 in real-time and live cells
-
10.1083/jcb.200706018, 2064765, 17954611
-
Boireau S, Maiuri P, Basyuk E, De La Mata M, Knezevich A, Pradet-Balade B, Bäcker V, Kornblihtt A, Marcello A, Bertrand E. The transcriptional cycle of HIV-1 in real-time and live cells. Journal of Cell Biology 2007, 179(2):291-304. 10.1083/jcb.200706018, 2064765, 17954611.
-
(2007)
Journal of Cell Biology
, vol.179
, Issue.2
, pp. 291-304
-
-
Boireau, S.1
Maiuri, P.2
Basyuk, E.3
De La Mata, M.4
Knezevich, A.5
Pradet-Balade, B.6
Bäcker, V.7
Kornblihtt, A.8
Marcello, A.9
Bertrand, E.10
-
24
-
-
78651289449
-
Ensembl 2011
-
3013672, 21045057
-
Flicek P, Amode M, Barrell D, Beal K, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Gordon L, Hendrix M, Hourlier T, Johnson N, Kähäri A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Kulesha E, Larsson P, Longden I, McLaren W, Overduin B, Pritchard B, Riat H, Rios D, Ritchie G, Ruffier M, Schuster M, Sobral D, Spudich G, Tang Y, Trevanion S, Vandrovcova J, Vilella A, White S, Wilder S, Zadissa A, Zamora J, Aken B, Birney E, Cunningham F, Dunham I, Durbin R, Fernández-Suarez X, Herrero J, Hubbard T, Parker A, Proctor G, Vogel J, Searle S. Ensembl 2011. Nucleic Acids Research 2011, 39(SUPPL. 1):D800-D806. 3013672, 21045057.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
Flicek, P.1
Amode, M.2
Barrell, D.3
Beal, K.4
Brent, S.5
Chen, Y.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
Gordon, L.11
Hendrix, M.12
Hourlier, T.13
Johnson, N.14
Kähäri, A.15
Keefe, D.16
Keenan, S.17
Kinsella, R.18
Kokocinski, F.19
Kulesha, E.20
Larsson, P.21
Longden, I.22
McLaren, W.23
Overduin, B.24
Pritchard, B.25
Riat, H.26
Rios, D.27
Ritchie, G.28
Ruffier, M.29
Schuster, M.30
Sobral, D.31
Spudich, G.32
Tang, Y.33
Trevanion, S.34
Vandrovcova, J.35
Vilella, A.36
White, S.37
Wilder, S.38
Zadissa, A.39
Zamora, J.40
Aken, B.41
Birney, E.42
Cunningham, F.43
Dunham, I.44
Durbin, R.45
Fernández-Suarez, X.46
Herrero, J.47
Hubbard, T.48
Parker, A.49
Proctor, G.50
Vogel, J.51
Searle, S.52
more..
-
25
-
-
33845873289
-
Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
-
10.1093/bioinformatics/btl529, 17050570
-
Letunic I, Bork P. Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation. Bioinformatics 2007, 23:127-128. 10.1093/bioinformatics/btl529, 17050570.
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
26
-
-
84888279483
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Research
-
Nucleic Acids Research
-
-
Letunic, I.1
Bork, P.2
-
27
-
-
58149185123
-
Ensembl 2009
-
2686571, 19033362
-
Hubbard T, Aken B, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Graf S, Haider S, Hammond M, Holland R, Howe K, Jenkinson A, Johnson N, Kahari A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Rios D, Schuster M, Slater G, Smedley D, Spooner W, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wilder S, Zadissa A, Birney E, Cunningham F, Curwen V, Durbin R, Fernandez-Suarez X, Herrero J, Kasprzyk A, Proctor G, Smith J, Searle S, Flicek P. Ensembl 2009. Nucleic Acids Research 2009, 37(SUPPL. 1):D690-D697. 2686571, 19033362.
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.SUPPL. 1
-
-
Hubbard, T.1
Aken, B.2
Ayling, S.3
Ballester, B.4
Beal, K.5
Bragin, E.6
Brent, S.7
Chen, Y.8
Clapham, P.9
Clarke, L.10
Coates, G.11
Fairley, S.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Gordon, L.15
Graf, S.16
Haider, S.17
Hammond, M.18
Holland, R.19
Howe, K.20
Jenkinson, A.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Keenan, S.25
Kinsella, R.26
Kokocinski, F.27
Kulesha, E.28
Lawson, D.29
Longden, I.30
Megy, K.31
Meidl, P.32
Overduin, B.33
Parker, A.34
Pritchard, B.35
Rios, D.36
Schuster, M.37
Slater, G.38
Smedley, D.39
Spooner, W.40
Spudich, G.41
Trevanion, S.42
Vilella, A.43
Vogel, J.44
White, S.45
Wilder, S.46
Zadissa, A.47
Birney, E.48
Cunningham, F.49
Curwen, V.50
Durbin, R.51
Fernandez-Suarez, X.52
Herrero, J.53
Kasprzyk, A.54
Proctor, G.55
Smith, J.56
Searle, S.57
Flicek, P.58
more..
-
28
-
-
55549095155
-
Genome-wide nucleotide-level mammalian ancestor reconstruction
-
10.1101/gr.076521.108, 2577868, 18849525
-
Paten B, Herrero J, Fitzgerald S, Beal K, Flicek P, Holmes I, Birney E. Genome-wide nucleotide-level mammalian ancestor reconstruction. Genome Research 2008, 18(11):1829-1843. 10.1101/gr.076521.108, 2577868, 18849525.
-
(2008)
Genome Research
, vol.18
, Issue.11
, pp. 1829-1843
-
-
Paten, B.1
Herrero, J.2
Fitzgerald, S.3
Beal, K.4
Flicek, P.5
Holmes, I.6
Birney, E.7
|