Gene expression profiling in human high-grade astrocytomas

Comparative and Functional Genomics

Volumn 2011, Issue , 2011, Pages

  Lu, Yicheng ^c   Liu, Zhongyu ^a   Yao, Zhiqiang ^a   Li, Chao ^b   Gao, Chunfang ^a  

^a No 150 Central Hospital of PLA   (China)

^b SICHUAN CANCER HOSPITAL   (China)

^c SECOND MILITARY MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

ADULT; AGED; ARTICLE; ASTROCYTOMA; CANCER CLASSIFICATION; CANCER GRADING; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE ONTOLOGY; GENETICS; GLIOBLASTOMA; HUMAN; HUMAN TISSUE; MALE; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; PREDICTION ANALYSIS FOR MICROARRAY; PRIORITY JOURNAL;

EID: 80053462301     PISSN: 15316912     EISSN: 15326268     Source Type: Journal    
DOI: 10.1155/2011/245137     Document Type: Article

References (31)

1. A free encyclopedia to glossary on the Internet: Citation formats. July 2009, http://en.wikipedia.org/wiki/Astrocytoma
2. Scott J. N., Rewcastle N. B., Brasher P. M. A., Fulton D., Hagen N. A., MacKinnon J. A., Sutherland G., Cairncross J. G., Forsyth P., Long-term glioblastoma multiforme survivors: a population-based study Canadian Journal of Neurological Sciences 1998 25 3 197 201 (Pubitemid 28368794)
3. Everitt B., Cluster Analysis 1974 London, UK Heinemann
4. Tibshirani R., Hastie T., Narasimhan B., Chu G., Diagnosis of multiple cancer types by shrunken centroids of gene expression Proceedings of the National Academy of Sciences of the United States of America 2002 99 10 6567 6572 (Pubitemid 34526173)
5. Kanehisa M., A database for post-genome analysis Trends in Genetics 1997 13 9 375 376 (Pubitemid 27376679)
6. Kanehisa M., Goto S., KEGG: Kyoto encyclopedia of genes and genomes Nucleic Acids Research 2000 28 1 27 30 (Pubitemid 30047706)
7. Ashburner M., Ball C. A., Blake J. A., Botstein D., Butler H., Cherry J. M., Davis A. P., Dolinski K., Dwight S. S., Eppig J. T., Harris M. A., Hill D. P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J. C., Richardson J. E., Ringwald M., Rubin G. M., Sherlock G., Gene ontology: tool for the unification of biology Nature Genetics 2000 25 1 25 29 (Pubitemid 30257031)
8. RDevelopmentCoreTeam, R: A language and environment for statistical computing. In R Foundation for Statistical Computing Vienna, 2006
9. Gentleman R. C., Carey V. J., Bates D. M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry R., Leisch F., Li C., Maechler M., Rossini A. J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J. Y., Zhang J., Bioconductor: open software development for computational biology and bioinformatics Genome Biology 2004 5 10 R80
10. Wu Z., Irizarry R. A., Stochastic models inspired by hybridization theory for short oligonucleotide arrays Journal of Computational Biology 2005 12 6 882 893 (Pubitemid 41170488)
11. Affymetrix, Affymetrix Microarray Suite User Guide. Affymetrix, 2001
12. Schuster E. F., Blanc E., Partridge L., Thornton J. M., Correcting for sequence biases in present/absent calls Genome Biology 2007 8 6
13. Roux J., Robinson-Rechavi M., Developmental constraints on vertebrate genome evolution PLoS Genetics 2008 4 12
14. McClintick J. N., Edenberg H. J., Effects of filtering by Present call on analysis of microarray experiments BMC Bioinformatics 2006 7
15. Saeed A. I., Sharov V., White J., Li J., Liang W., Bhagabati N., Braisted J., Klapa M., Currier T., Thiagarajan M., Sturn A., Snuffin M., Rezantsev A., Popov D., Ryltsov A., Kostukovich E., Borisovsky I., Liu Z., Vinsavich A., Trush V., Quackenbush J., TM4: a free, open-source system for microarray data management and analysis BioTechniques 2003 34 2 374 378 (Pubitemid 36184095)
16. Zar J. H., Biostatistical Analysis 1999 4th New York, NY, USA Prentice Hall
17. Wu Z., Irizarry R. A., Stochastic models inspired by hybridization theory for short oligonucleotide arrays Journal of Computational Biology 2005 12 6 882 893 (Pubitemid 41170488)
18. Huang D. W., Sherman B. T., Lempicki R. A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nature Protocols 2009 4 1 44 57
19. Drghici S., Khatri P., Martins R. P., Ostermeier G. C., Krawetz S. A., Global functional profiling of gene expression Genomics 2003 81 2 98 104 (Pubitemid 36298600)
20. Benjamini Y., Yekutieli D., The control of the false discovery rate in multiple testing under dependency Annals of Statistics 2001 29 4 1165 1188 (Pubitemid 33575263)
21. Dennis G., Sherman B. T., Hosack D. A., Yang J., Gao W., Lane H. C., Lempicki R. A., DAVID: database for annotation, visualization, and integrated discovery Genome Biology 2003 4 5 P3
22. Zhang B., Kirov S., Snoddy J., WebGestalt: an integrated system for exploring gene sets in various biological contexts Nucleic Acids Research 2005 33 2 W741 W748
23. Cadman E. D., Witte D. G., Lee C. M., Regulation of the release of interleukin-6 from human astrocytoma cells Journal of Neurochemistry 1994 63 3 980 987 (Pubitemid 24266611)
24. Wang D., Grammer J. R., Cobbs C. S., Stewart J. E., Liu Z., Rhoden R., Hecker T. P., Ding Q., Gladson C. L., P125 focal adhesion kinase promotes malignant astrocytoma cell proliferation in vivo Journal of Cell Science 2000 113 23 4221 4230 (Pubitemid 32000689)
25. Braet K., Cabooter L., Paemeleire K., Leybaert L., Calcium signal communication in the central nervous system Biology of the Cell 2004 96 1 79 91 (Pubitemid 38240401)
26. Skinner M. K., Anway M. D., Savenkova M. I., Gore A. C., Crews D., Transgenerational epigenetic programming of the brain transcriptome and anxiety behavior PLoS One 2008 3 11
27. Chang L., Karin M., Mammalian MAP kinase signalling cascades Nature 2001 410 6824 37 40 (Pubitemid 32225829)
28. Dhillon A. S., Hagan S., Rath O., Kolch W., MAP kinase signalling pathways in cancer Oncogene 2007 26 22 3279 3290 (Pubitemid 46763021)
29. Bakin R. E., Gioeli D., Sikes R. A., Bissonette E. A., Weber M. J., Constitutive activation of the Ras/mitogen-activated protein kinase signaling pathway promotes androgen hypersensitivity in LNCaP prostate cancer cells Cancer Research 2003 63 8 1981 1989 (Pubitemid 36460867)
30. Zafon C., Obiols G., The mitogen-activated protein kinase (MAPK) signaling pathway in papillary thyroid cancer. From the molecular bases to clinical practice Endocrinologia y Nutricion 2009 56 4 176 186
31. Mizoguchi M., Betensky R. A., Batchelor T. T., Bernay D. C., Louis D. N., Nutt C. L., Activation of STAT3, MAPK, and AKT in malignant astrocytic gliomas: correlation with EGFR status, tumor grade, and survival Journal of Neuropathology and Experimental Neurology 2006 65 12 1181 1188 (Pubitemid 44885942)