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Volumn 7, Issue 9, 2011, Pages

Inference of relationships in population data using identity-by-descent and identity-by-state

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHILD PARENT RELATION; CHROMOSOME; COMPUTER PROGRAM; GENETIC ASSOCIATION; GENETIC PARAMETERS; GENETIC VARIABILITY; HAPLOTYPE; HETEROZYGOSITY; HIDDEN MARKOV MODEL; HOMOZYGOSITY; IDENTITY BY DESCENT; IDENTITY BY STATE; INBREEDING; MOLECULAR PHYLOGENY; PEDIGREE; POPULATION GENETICS; SIBLING RELATION; ALGORITHM; ALLELE; COMPUTER SIMULATION; GENETIC LINKAGE; GENETICS; GENOTYPE; HOMOZYGOTE; HUMAN; HUMAN GENOME; METHODOLOGY; PROBABILITY; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS;

EID: 80053460553     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002287     Document Type: Article
Times cited : (70)

References (40)
  • 1
    • 43049146524 scopus 로고    scopus 로고
    • A HapMap harvest of insights into the genetics of common disease
    • Manolio TA, Brooks LD, Collins FS, (2008) A HapMap harvest of insights into the genetics of common disease. J Clin Invest 118: 1590-1605.
    • (2008) J Clin Invest , vol.118 , pp. 1590-1605
    • Manolio, T.A.1    Brooks, L.D.2    Collins, F.S.3
  • 2
    • 0025093523 scopus 로고
    • The power of identity-by-state methods for linkage analysis
    • Bishop DT, Williamson JA, (1990) The power of identity-by-state methods for linkage analysis. Am J Hum Genet 46: 254-265.
    • (1990) Am J Hum Genet , vol.46 , pp. 254-265
    • Bishop, D.T.1    Williamson, J.A.2
  • 3
    • 0346882598 scopus 로고    scopus 로고
    • Testing the genetic relation between two individuals using a panel of frequency-unknown single nucleotide polymorphisms
    • Lee W, (2003) Testing the genetic relation between two individuals using a panel of frequency-unknown single nucleotide polymorphisms. Ann Hum Genet pp. 618-619.
    • (2003) Ann Hum Genet , pp. 618-619
    • Lee, W.1
  • 4
    • 33749575795 scopus 로고    scopus 로고
    • Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives
    • Rosenberg NA, (2006) Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives. Ann Hum Genet 70: 841-847.
    • (2006) Ann Hum Genet , vol.70 , pp. 841-847
    • Rosenberg, N.A.1
  • 5
    • 0004135251 scopus 로고
    • A calculus for statistico-genetics: Ohio State University
    • Cotterman C, (1940) A calculus for statistico-genetics: Ohio State University.
    • (1940)
    • Cotterman, C.1
  • 6
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5
  • 7
    • 79851497145 scopus 로고    scopus 로고
    • A fast, powerful method for detecting identity by descent
    • Browning BL, Browning SR, (2011) A fast, powerful method for detecting identity by descent. Am J Hum Genet 88: 173-182.
    • (2011) Am J Hum Genet , vol.88 , pp. 173-182
    • Browning, B.L.1    Browning, S.R.2
  • 8
    • 77950332127 scopus 로고    scopus 로고
    • High-resolution detection of identity by descent in unrelated individuals
    • Browning SR, Browning BL, (2010) High-resolution detection of identity by descent in unrelated individuals. Am J Hum Genet 86: 526-539.
    • (2010) Am J Hum Genet , vol.86 , pp. 526-539
    • Browning, S.R.1    Browning, B.L.2
  • 9
    • 59949088494 scopus 로고    scopus 로고
    • Whole population, genome-wide mapping of hidden relatedness
    • Gusev A, Lowe JK, Stoffel M, Daly MJ, Altshuler D, et al. (2009) Whole population, genome-wide mapping of hidden relatedness. Genome Res 19: 318-326.
    • (2009) Genome Res , vol.19 , pp. 318-326
    • Gusev, A.1    Lowe, J.K.2    Stoffel, M.3    Daly, M.J.4    Altshuler, D.5
  • 10
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • Consortium IH, (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
    • Consortium, I.H.1
  • 11
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • Durbin RM, Abecasis GR, Altshuler DL, Auton A, Brooks LD, et al. (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Durbin, R.M.1    Abecasis, G.R.2    Altshuler, D.L.3    Auton, A.4    Brooks, L.D.5
  • 12
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5
  • 14
    • 77950301214 scopus 로고    scopus 로고
    • Variance component model to account for sample structure in genome-wide association studies
    • Kang HM, Sul JH, Service SK, Zaitlen NA, Kong SY, et al. (2010) Variance component model to account for sample structure in genome-wide association studies. Nat Genet 42: 348-354.
    • (2010) Nat Genet , vol.42 , pp. 348-354
    • Kang, H.M.1    Sul, J.H.2    Service, S.K.3    Zaitlen, N.A.4    Kong, S.Y.5
  • 15
    • 69249222850 scopus 로고    scopus 로고
    • Visualization of shared genomic regions and meiotic recombination in high-density SNP data
    • doi:10.1371/journal.pone.0006711
    • Roberson ED, Pevsner J, (2009) Visualization of shared genomic regions and meiotic recombination in high-density SNP data. PLoS ONE 4: e6711 doi:10.1371/journal.pone.0006711.
    • (2009) PLoS ONE , vol.4
    • Roberson, E.D.1    Pevsner, J.2
  • 16
    • 84859968290 scopus 로고    scopus 로고
    • PLINK website:
    • PLINK website:http://pngu.mgh.harvard.edu/purcell/plink/.
  • 17
    • 77954158128 scopus 로고    scopus 로고
    • Whole-genome sequencing of a single proband together with linkage analysis identifies a Mendelian disease gene
    • doi: 10.1371/journal.pgen.1000991
    • Sobreira NL, Cirulli ET, Avramopoulos D, Wohler E, Oswald GL, et al. (2010) Whole-genome sequencing of a single proband together with linkage analysis identifies a Mendelian disease gene. PLoS Genet 6: e1000991 doi:10.1371/journal.pgen.1000991.
    • (2010) PLoS Genet , vol.6
    • Sobreira, N.L.1    Cirulli, E.T.2    Avramopoulos, D.3    Wohler, E.4    Oswald, G.L.5
  • 18
    • 77957753324 scopus 로고    scopus 로고
    • Inference of unexpected genetic relatedness among individuals in HapMap Phase III
    • Pemberton TJ, Wang C, Li JZ, Rosenberg NA, (2010) Inference of unexpected genetic relatedness among individuals in HapMap Phase III. Am J Hum Genet 87: 457-464.
    • (2010) Am J Hum Genet , vol.87 , pp. 457-464
    • Pemberton, T.J.1    Wang, C.2    Li, J.Z.3    Rosenberg, N.A.4
  • 19
    • 33748786787 scopus 로고    scopus 로고
    • Genetic relatedness analysis: modern data and new challenges
    • Weir BS, Anderson AD, Hepler AB, (2006) Genetic relatedness analysis: modern data and new challenges. Nat Rev Genet 7: 771-780.
    • (2006) Nat Rev Genet , vol.7 , pp. 771-780
    • Weir, B.S.1    Anderson, A.D.2    Hepler, A.B.3
  • 20
    • 66749139020 scopus 로고    scopus 로고
    • Using allele sharing distance for detecting human population stratification
    • Gao X, Martin ER, (2009) Using allele sharing distance for detecting human population stratification. Hum Hered 68: 182-191.
    • (2009) Hum Hered , vol.68 , pp. 182-191
    • Gao, X.1    Martin, E.R.2
  • 21
    • 67349285774 scopus 로고    scopus 로고
    • Application of genome-wide SNP data for uncovering pairwise relationships and quantitative trait loci
    • Sham PC, Cherny SS, Purcell S, (2009) Application of genome-wide SNP data for uncovering pairwise relationships and quantitative trait loci. Genetica 136: 237-243.
    • (2009) Genetica , vol.136 , pp. 237-243
    • Sham, P.C.1    Cherny, S.S.2    Purcell, S.3
  • 22
    • 0003946510 scopus 로고    scopus 로고
    • Principal Component Analysis: Springer
    • Jolliffe IT, (2002) Principal Component Analysis: Springer.
    • (2002)
    • Jolliffe, I.T.1
  • 23
    • 71449083275 scopus 로고    scopus 로고
    • Genomic dissection of population substructure of Han Chinese and its implication in association studies
    • Xu S, Yin X, Li S, Jin W, Lou H, et al. (2009) Genomic dissection of population substructure of Han Chinese and its implication in association studies. Am J Hum Genet 85: 762-774.
    • (2009) Am J Hum Genet , vol.85 , pp. 762-774
    • Xu, S.1    Yin, X.2    Li, S.3    Jin, W.4    Lou, H.5
  • 24
    • 71149105110 scopus 로고    scopus 로고
    • Genetic structure of the Han Chinese population revealed by genome-wide SNP variation
    • Chen J, Zheng H, Bei JX, Sun L, Jia WH, et al. (2009) Genetic structure of the Han Chinese population revealed by genome-wide SNP variation. Am J Hum Genet 85: 775-785.
    • (2009) Am J Hum Genet , vol.85 , pp. 775-785
    • Chen, J.1    Zheng, H.2    Bei, J.X.3    Sun, L.4    Jia, W.H.5
  • 25
    • 49649084390 scopus 로고    scopus 로고
    • Correlation between genetic and geographic structure in Europe
    • Lao O, Lu TT, Nothnagel M, Junge O, Freitag-Wolf S, et al. (2008) Correlation between genetic and geographic structure in Europe. Curr Biol 18: 1241-1248.
    • (2008) Curr Biol , vol.18 , pp. 1241-1248
    • Lao, O.1    Lu, T.T.2    Nothnagel, M.3    Junge, O.4    Freitag-Wolf, S.5
  • 28
  • 29
    • 76249102674 scopus 로고    scopus 로고
    • Genome-wide patterns of population structure and admixture in West Africans and African Americans
    • Bryc K, Auton A, Nelson MR, Oksenberg JR, Hauser SL, et al. (2010) Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc Natl Acad Sci U S A 107: 786-791.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 786-791
    • Bryc, K.1    Auton, A.2    Nelson, M.R.3    Oksenberg, J.R.4    Hauser, S.L.5
  • 31
    • 57549105439 scopus 로고    scopus 로고
    • Analysis of East Asia genetic substructure using genome-wide SNP arrays
    • doi: 10.1371/journal.pone.0003862
    • Tian C, Kosoy R, Lee A, Ransom M, Belmont JW, et al. (2008) Analysis of East Asia genetic substructure using genome-wide SNP arrays. PLoS ONE 3: e3862 doi:10.1371/journal.pone.0003862.
    • (2008) PLoS ONE , vol.3
    • Tian, C.1    Kosoy, R.2    Lee, A.3    Ransom, M.4    Belmont, J.W.5
  • 33
    • 73349108482 scopus 로고    scopus 로고
    • A genealogical interpretation of principal components analysis
    • doi: 10.1371/journal.pgen.1000686
    • McVean G, (2009) A genealogical interpretation of principal components analysis. PLoS Genet 5: e1000686 doi:10.1371/journal.pgen.1000686.
    • (2009) PLoS Genet , vol.5
    • McVean, G.1
  • 34
    • 77950420274 scopus 로고    scopus 로고
    • Rapid assessment of genetic ancestry in populations of unknown origin by genome-wide genotyping of pooled samples
    • 0866, doi: 10.1371/journal.pgen.1000866
    • Chiang CW, Gajdos ZK, Korn JM, Kuruvilla FG, Butler JL, et al. (0866) Rapid assessment of genetic ancestry in populations of unknown origin by genome-wide genotyping of pooled samples. PLoS Genet 6: e1000866 doi:10.1371/journal.pgen.1000866.
    • PLoS Genet , vol.6
    • Chiang, C.W.1    Gajdos, Z.K.2    Korn, J.M.3    Kuruvilla, F.G.4    Butler, J.L.5
  • 35
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • doi: 10.1371/journal.pgen.1000695
    • Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD, (2009) Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet 5: e1000695 doi:10.1371/journal.pgen.1000695.
    • (2009) PLoS Genet , vol.5
    • Gutenkunst, R.N.1    Hernandez, R.D.2    Williamson, S.H.3    Bustamante, C.D.4
  • 36
    • 77955505802 scopus 로고    scopus 로고
    • The Effect of Recent Admixture on Inference of Ancient Human Population History
    • doi: 10.1534/genetics.109.113761
    • Lohmueller KE, Bustamante CD, Clark AG, (2010) The Effect of Recent Admixture on Inference of Ancient Human Population History. Genetics doi:10.1534/genetics.109.113761.
    • (2010) Genetics
    • Lohmueller, K.E.1    Bustamante, C.D.2    Clark, A.G.3
  • 37
    • 39449116116 scopus 로고    scopus 로고
    • High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans
    • Coop G, Wen X, Ober C, Pritchard JK, Przeworski M, (2008) High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science 319: 1395-1398.
    • (2008) Science , vol.319 , pp. 1395-1398
    • Coop, G.1    Wen, X.2    Ober, C.3    Pritchard, J.K.4    Przeworski, M.5
  • 40
    • 84859944412 scopus 로고    scopus 로고
    • Pevsner lab website:
    • Pevsner lab website:http://pevsnerlab.kennedykrieger.org/.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.