Metannogen: Annotation of biological reaction networks

Bioinformatics

Volumn 27, Issue 19, 2011, Pages 2763-2764

  Gille, Christoph ^a   Hübner, Katrin ^b   Hoppe, Andreas ^a   Holzhütter, Hermann Georg ^a  

^a CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; BIOLOGICAL PHENOMENA AND FUNCTIONS CONCERNING THE ENTIRE ORGANISM; COMPUTER PROGRAM; DATA BASE; METABOLISM;

BIOLOGICAL PROCESSES; DATABASE MANAGEMENT SYSTEMS; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; SOFTWARE DESIGN;

EID: 80053446839     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr456     Document Type: Article

References (14)

1. Bornstein, B.J. et al. (2008) LibSBML: an API library for SBML. Bioinformatics, 24, 880-881.
2. Duarte, N.C. et al. (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc. Natl Acad. Sci. USA, 104, 1777-1782.
3. Forth, T. et al. (2010) MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format. Bioinformatics, 26, 2352-2353.
4. Gille, C. et al. (2010) HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology. Mol. Syst. Biol., 6, 411.
5. Gille, C. et al. (2007) METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. BMC Syst. Biol., 1, 5.
6. Gille, C. et al. (2008) Web-links as a means to document annotated sequence and 3Dstructure alignments in systems biology. Genome Inform., 20, 277-284.
7. Hoppe, A. et al. (2011) FASIMU: flexible software for flux-balance computation series in large metabolic networks. BMC Bioinformatics, 12, 28.
8. Hucka, M. and Le Novere, N. (2010) Software that goes with the flow in systems biology. BMC Biol., 8, 140.
9. Kanehisa, M. (2002) The KEGG database. Novartis Found Symp., 247, 91-52.
10. Krause, F. et al. (2010) Annotation and merging of SBML models with semanticSBML. Bioinformatics, 26, 421-422.
11. Le Novere, N. et al. (2005) Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol., 23, 1509-1515.
12. Pabinger, S. et al. (2011) MEMOSys: Bioinformatics platform for genome-scale metabolic models. BMC Syst. Biol., 5, 20.
13. Wang, Y.T. et al. (2010) PINT: Pathways INtegration Tool. Nucleic Acids Res., 38, 124-131.
14. Weidemann, A. et al. (2008) SYCAMORE-a systems biology computational analysis and modeling research environment. Bioinformatics, 24, 1463-1464.