-
1
-
-
33644877164
-
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
-
Le Novere,N., Bornstein,B., Broicher,A., Courtot,M., Donizelli,M., Dharuri,H., Li,L., Sauro,H., Schilstra,M., Shapiro,B. et al. (2006) BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res., 34, D689-D691.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Le Novere, N.1
Bornstein, B.2
Broicher, A.3
Courtot, M.4
Donizelli, M.5
Dharuri, H.6
Li, L.7
Sauro, H.8
Schilstra, M.9
Shapiro, B.10
-
2
-
-
70349581595
-
PANTHER pathway: an ontology-based pathway database coupled with data analysis tools
-
Mi,H. and Thomas,P. (2009) PANTHER pathway: an ontology-based pathway database coupled with data analysis tools. Methods Mol. Biol., 563, 123-140.
-
(2009)
Methods Mol. Biol.
, vol.563
, pp. 123-140
-
-
Mi, H.1
Thomas, P.2
-
3
-
-
58149186477
-
PID: the Pathway Interaction Database
-
Schaefer,C.F., Anthony,K., Krupa,S., Buchoff,J., Day,M., Hannay,T. and Buetow,K.H. (2009) PID: the Pathway Interaction Database. Nucleic Acids Res., 37, D674-D679.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
Day, M.5
Hannay, T.6
Buetow, K.H.7
-
4
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
Hucka,M., Finney,A., Sauro,H.M., Bolouri,H., Doyle,J.C., Kitano,H., Arkin,A.P., Bornstein,B.J., Bray,D., Cornish-Bowden,A. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
-
5
-
-
44449113812
-
Getting started in biological pathway construction and analysis
-
Viswanathan,G.A., Seto,J., Patil,S., Nudelman,G. and Sealfon,S.C. (2008) Getting started in biological pathway construction and analysis. PLoS Comput. Biol., 4, e16.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Viswanathan, G.A.1
Seto, J.2
Patil, S.3
Nudelman, G.4
Sealfon, S.C.5
-
6
-
-
46049111677
-
PATIKAmad: putting microarray data into pathway context
-
Babur,O., Colak,R., Demir,E. and Dogrusoz,U. (2008) PATIKAmad: putting microarray data into pathway context. Proteomics, 8, 2196-2198.
-
(2008)
Proteomics
, vol.8
, pp. 2196-2198
-
-
Babur, O.1
Colak, R.2
Demir, E.3
Dogrusoz, U.4
-
7
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon,P., Markiel,A., Ozier,O., Baliga,N.S., Wang,J.T., Ramage,D., Amin,N., Schwikowski,B. and Ideker,T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
8
-
-
77949499064
-
ChiBE: interactive visualization and manipulation of BioPAX pathway models
-
Babur,O., Dogrusoz,U., Demir,E. and Sander,C. (2010) ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics, 26, 429-431.
-
(2010)
Bioinformatics
, vol.26
, pp. 429-431
-
-
Babur, O.1
Dogrusoz, U.2
Demir, E.3
Sander, C.4
-
9
-
-
59149086623
-
Estrogen signaling pathway and hormonal therapy
-
Hayashi,S. and Yamaguchi,Y. (2008) Estrogen signaling pathway and hormonal therapy. Breast Cancer, 15, 256-261.
-
(2008)
Breast Cancer
, vol.15
, pp. 256-261
-
-
Hayashi, S.1
Yamaguchi, Y.2
-
10
-
-
68249106060
-
BH3-only proteins in apoptosis and beyond: an overview
-
Lomonosova,E. and Chinnadurai,G. (2008) BH3-only proteins in apoptosis and beyond: an overview. Oncogene, 27(Suppl. 1), S2-S19.
-
(2008)
Oncogene
, vol.27
, Issue.SUPPL. 1
-
-
Lomonosova, E.1
Chinnadurai, G.2
-
11
-
-
68149112387
-
Mimicking the BH3 domain to kill cancer cells
-
Chonghaile,T.N. and Letai,A. (2008) Mimicking the BH3 domain to kill cancer cells. Oncogene, 27(Suppl. 1), S149-S157.
-
(2008)
Oncogene
, vol.27
, Issue.SUPPL. 1
-
-
Chonghaile, T.N.1
Letai, A.2
-
12
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
Jonsson,P.F. and Bates,P.A. (2006) Global topological features of cancer proteins in the human interactome. Bioinformatics, 22, 2291-2297.
-
(2006)
Bioinformatics
, vol.22
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
13
-
-
57149142362
-
Cross-talk between the ErbB/HER family and the type I insulin-like growth factor receptor signaling pathway in breast cancer
-
Jin,Q. and Esteva,F.J. (2008) Cross-talk between the ErbB/HER family and the type I insulin-like growth factor receptor signaling pathway in breast cancer. J. Mammary Gland Biol. Neoplasia, 13, 485-498.
-
(2008)
J. Mammary Gland Biol. Neoplasia
, vol.13
, pp. 485-498
-
-
Jin, Q.1
Esteva, F.J.2
-
14
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
Le Novere,N., Finney,A., Hucka,M., Bhalla,U.S., Campagne,F., Collado-Vides,J., Crampin,E.J., Halstead,M., Klipp,E., Mendes,P. et al. (2005) Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol., 23, 1509-1515.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1509-1515
-
-
Le Novere, N.1
Finney, A.2
Hucka, M.3
Bhalla, U.S.4
Campagne, F.5
Collado-Vides, J.6
Crampin, E.J.7
Halstead, M.8
Klipp, E.9
Mendes, P.10
-
15
-
-
68449103579
-
The systems biology graphical notation
-
Le Novere,N., Hucka,M., Mi,H., Moodie,S., Schreiber,F., Sorokin,A., Demir,E., Wegner,K., Aladjem,M.I., Wimalaratne,S.M. et al. (2009) The systems biology graphical notation. Nat. Biotechnol., 27, 735-741.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 735-741
-
-
Le Novere, N.1
Hucka, M.2
Mi, H.3
Moodie, S.4
Schreiber, F.5
Sorokin, A.6
Demir, E.7
Wegner, K.8
Aladjem, M.I.9
Wimalaratne, S.M.10
-
16
-
-
23444439817
-
Using process diagrams for the graphical representation of biological networks
-
Kitano,H., Funahashi,A., Matsuoka,Y. and Oda,K. (2005) Using process diagrams for the graphical representation of biological networks. Nat. Biotechnol., 23, 961-966.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 961-966
-
-
Kitano, H.1
Funahashi, A.2
Matsuoka, Y.3
Oda, K.4
-
17
-
-
38549117309
-
The HGNC Database in 2008, a resource for the human genome
-
Bruford,E.A., Lush,M.J., Wright,M.W., Sneddon,T.P., Povey,S. and Birney,E. (2008) The HGNC Database in 2008: a resource for the human genome. Nucleic Acids Res., 36, D445-D448.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Bruford, E.A.1
Lush, M.J.2
Wright, M.W.3
Sneddon, T.P.4
Povey, S.5
Birney, E.6
-
18
-
-
75549092202
-
Chemical Entities of Biological Interest: an update
-
de Matos,P., Alcantara,R., Dekker,A., Ennis,M., Hastings,J., Haug,K., Spiteri,I., Turner,S. and Steinbeck,C. (2010) Chemical Entities of Biological Interest: an update. Nucleic Acids Res., 38, D249-D254.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
de Matos, P.1
Alcantara, R.2
Dekker, A.3
Ennis, M.4
Hastings, J.5
Haug, K.6
Spiteri, I.7
Turner, S.8
Steinbeck, C.9
-
19
-
-
33947623106
-
SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML)
-
Rodriguez,N., Donizelli,M. and Le Novere,N. (2007) SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML). BMC Bioinform., 8, 79.
-
(2007)
BMC Bioinform
, vol.8
, pp. 79
-
-
Rodriguez, N.1
Donizelli, M.2
Le Novere, N.3
-
20
-
-
0035964458
-
Ras and Rho regulation of the cell cycle and oncogenesis
-
Pruitt,K. and Der,C.J. (2001) Ras and Rho regulation of the cell cycle and oncogenesis. Cancer Lett., 171, 1-10.
-
(2001)
Cancer Lett
, vol.171
, pp. 1-10
-
-
Pruitt, K.1
Der, C.J.2
-
21
-
-
3442890204
-
Role of HER receptors family in development and differentiation
-
Casalini,P., Iorio,M.V., Galmozzi,E. and Menard,S. (2004) Role of HER receptors family in development and differentiation. J. Cell. Physiol., 200, 343-350.
-
(2004)
J. Cell. Physiol.
, vol.200
, pp. 343-350
-
-
Casalini, P.1
Iorio, M.V.2
Galmozzi, E.3
Menard, S.4
-
22
-
-
0028173667
-
Acceleration of the G1/S phase transition by expression of cyclins D1 and E with an inducible system
-
Resnitzky,D., Gossen,M., Bujard,H. and Reed,S.I. (1994) Acceleration of the G1/S phase transition by expression of cyclins D1 and E with an inducible system. Mol. Cell. Biol., 14, 1669-1679.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 1669-1679
-
-
Resnitzky, D.1
Gossen, M.2
Bujard, H.3
Reed, S.I.4
-
23
-
-
0024389073
-
Expression of the c-erbB-2 proto-oncogene protein in human breast cancer
-
Gullick,W.J. (1989) Expression of the c-erbB-2 proto-oncogene protein in human breast cancer. Recent Results Cancer Res., 113, 51-56.
-
(1989)
Recent Results Cancer Res
, vol.113
, pp. 51-56
-
-
Gullick, W.J.1
-
24
-
-
59449106950
-
Network-based approaches for linking metabolism with environment
-
Janga,S.C. and Babu,M.M. (2008) Network-based approaches for linking metabolism with environment. Genome Biol., 9, 239.
-
(2008)
Genome Biol
, vol.9
, pp. 239
-
-
Janga, S.C.1
Babu, M.M.2
|