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Volumn 27, Issue 19, 2011, Pages 2767-2768

NetDS: A Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; COMPUTER PROGRAM; FEEDBACK SYSTEM; METABOLISM; PHYSIOLOGY; SIGNAL TRANSDUCTION;

EID: 80053440200     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr466     Document Type: Article
Times cited : (25)

References (18)
  • 1
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G. and Hogue, C. (2003) An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics, 4, 2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.1    Hogue, C.2
  • 2
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, A.L. and Albert, R. (1999) Emergence of scaling in random networks. Science, 286, 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 4
    • 34248576314 scopus 로고    scopus 로고
    • NetMatch: a Cytoscape plugin for searching biological networks
    • Ferro, A. et al. (2007) NetMatch: a Cytoscape plugin for searching biological networks, Bioinformatics, 23, 910-912.
    • (2007) Bioinformatics , vol.23 , pp. 910-912
    • Ferro, A.1
  • 5
    • 0034715919 scopus 로고    scopus 로고
    • Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks
    • Huang, S. and Ingber, D.E. (2000) Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks. Exp. Cell Res., 261, 91-103.
    • (2000) Exp. Cell Res. , vol.261 , pp. 91-103
    • Huang, S.1    Ingber, D.E.2
  • 6
    • 0345598902 scopus 로고    scopus 로고
    • Random Boolean network models and the yeast transcriptional network
    • Kauffman, S. et al. (2003) Random Boolean network models and the yeast transcriptional network. Proc. Natl Acad. Sci. USA, 100, 14796-14799.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 14796-14799
    • Kauffman, S.1
  • 7
    • 40049093544 scopus 로고    scopus 로고
    • Afeed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake
    • Kremling, A. et al. (2008) Afeed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake. Bioinformatics, 24, 704-710.
    • (2008) Bioinformatics , vol.24 , pp. 704-710
    • Kremling, A.1
  • 8
    • 50549104276 scopus 로고    scopus 로고
    • Coherent coupling of feedback loops: a design principle of cell signaling networks
    • Kwon, Y.-K. and Cho, K.-H. (2008a) Coherent coupling of feedback loops: a design principle of cell signaling networks. Bioinformatics, 24, 1926-1932.
    • (2008) Bioinformatics , vol.24 , pp. 1926-1932
    • Kwon, Y.-K.1    Cho, K.-H.2
  • 9
    • 41349112310 scopus 로고    scopus 로고
    • Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics
    • Kwon, Y.-K. and Cho, K.-H. (2008b) Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics. Bioinformatics, 24, 987-994.
    • (2008) Bioinformatics , vol.24 , pp. 987-994
    • Kwon, Y.-K.1    Cho, K.-H.2
  • 10
    • 36849052504 scopus 로고    scopus 로고
    • Investigations into the relationship between feedback loops and functional importance of a signal transduction network based on Boolean network modeling
    • Kwon, Y.-K. et al. (2007) Investigations into the relationship between feedback loops and functional importance of a signal transduction network based on Boolean network modeling. BMC Bioinformatics, 8, 384.
    • (2007) BMC Bioinformatics , vol.8 , pp. 384
    • Kwon, Y.-K.1
  • 11
    • 77950491448 scopus 로고    scopus 로고
    • Perturbation Analyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks
    • Li, F. et al. (2009) PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. Bioinformatics, 26, 275-277.
    • (2009) Bioinformatics , vol.26 , pp. 275-277
    • Li, F.1
  • 12
    • 27844551326 scopus 로고    scopus 로고
    • Dynamic properties of network motifs contribute to biological network organization
    • Prill, R.J. et al. (2005) Dynamic properties of network motifs contribute to biological network organization. PLoS Biol., 3, e343.
    • (2005) PLoS Biol , vol.3
    • Prill, R.J.1
  • 13
    • 75149120711 scopus 로고    scopus 로고
    • NeMo: network module identification in Cytoscape
    • Rivera, C. et al. (2010) NeMo: network module identification in Cytoscape. BMC Bioinformatics, 11, S61.
    • (2010) BMC Bioinformatics , vol.11
    • Rivera, C.1
  • 14
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 15
    • 0141480040 scopus 로고    scopus 로고
    • The role of certain post classes in Boolean network models of genetic networks
    • Shmulevich, I. et al. (2003) The role of certain post classes in Boolean network models of genetic networks. Proc. Natl Acad. Sci. USA, 100, 10734-10739.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 10734-10739
    • Shmulevich, I.1
  • 16
    • 39749141109 scopus 로고    scopus 로고
    • Network motif analysis of a multi-mode genetic-interaction network
    • Taylor, R.J. et al. (2007) Network motif analysis of a multi-mode genetic-interaction network. Genome Biol., 8, R160.
    • (2007) Genome Biol , vol.8
    • Taylor, R.J.1
  • 17
    • 75249087912 scopus 로고    scopus 로고
    • SimBoolNet-a Cytoscape plugin for dynamic simulation of signaling networks
    • Zheng, J. et al. (2010) SimBoolNet-a Cytoscape plugin for dynamic simulation of signaling networks. Bioinformatics, 26, 141-142.
    • (2010) Bioinformatics , vol.26 , pp. 141-142
    • Zheng, J.1
  • 18
    • 40749087306 scopus 로고    scopus 로고
    • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    • Zinovyev, A. et al. (2008) BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. Bioinformatics, 24, 876-877.
    • (2008) Bioinformatics , vol.24 , pp. 876-877
    • Zinovyev, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.