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Volumn 51, Issue 9, 2011, Pages 2345-2351

Anatomy of high-performance 2D similarity calculations

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Indexed keywords

PROGRAM PROCESSORS;

EID: 80053326488     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci200235e     Document Type: Article
Times cited : (32)

References (24)
  • 2
    • 33644861784 scopus 로고    scopus 로고
    • Diversity in medicinal chemistry space
    • Gorse, A. D. Diversity in medicinal chemistry space Curr. Top. Med. Chem. 2006, 6, 3-18
    • (2006) Curr. Top. Med. Chem. , vol.6 , pp. 3-18
    • Gorse, A.D.1
  • 3
    • 13844312649 scopus 로고    scopus 로고
    • ZINC - A free database of commercially available compounds for virtual screening
    • DOI 10.1021/ci049714+
    • Irwin, J. J.; Shoichet, B. K. ZINC-A Free Database of Commercially Available Compounds for Virtual Screening J. Chem. Inf. Model. 2005, 45, 177-182 (Pubitemid 40736970)
    • (2005) Journal of Chemical Information and Modeling , vol.45 , Issue.1 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 4
    • 67649619336 scopus 로고    scopus 로고
    • 970 Million Druglike Small Molecules for Virtual Screening in the Chemical Universe Database GDB-13
    • Blum, L. C.; Reymond, J.-L. 970 Million Druglike Small Molecules for Virtual Screening in the Chemical Universe Database GDB-13 J. Am. Chem. Soc. 2009, 131, 8732-8733
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 8732-8733
    • Blum, L.C.1    Reymond, J.-L.2
  • 5
    • 79960275000 scopus 로고    scopus 로고
    • Accelerating Two Algorithms for Large-Scale Compound Selection on GPUs
    • Liao, Q.; Wang, J.; Watson, I. A. Accelerating Two Algorithms for Large-Scale Compound Selection on GPUs J. Chem. Inf. Model. 2011, 51, 1017-1024
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1017-1024
    • Liao, Q.1    Wang, J.2    Watson, I.A.3
  • 6
    • 72449199553 scopus 로고    scopus 로고
    • PAPER - Accelerating parallel evaluations of ROCS
    • Haque, I. S.; Pande, V. S. PAPER - Accelerating parallel evaluations of ROCS J. Comput. Chem. 2009, 31, 117-132
    • (2009) J. Comput. Chem. , vol.31 , pp. 117-132
    • Haque, I.S.1    Pande, V.S.2
  • 7
    • 77952004390 scopus 로고    scopus 로고
    • SIML: A Fast SIMD Algorithm for Calculating LINGO Chemical Similarities on GPUs and CPUs
    • Haque, I. S.; Pande, V. S.; Walters, W. P. SIML: A Fast SIMD Algorithm for Calculating LINGO Chemical Similarities on GPUs and CPUs J. Chem. Inf. Model. 2010, 50, 560-564
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 560-564
    • Haque, I.S.1    Pande, V.S.2    Walters, W.P.3
  • 9
    • 77954037387 scopus 로고    scopus 로고
    • SCISSORS: A Linear-Algebraical Technique to Rapidly Approximate Chemical Similarities
    • Haque, I. S.; Pande, V. S. SCISSORS: A Linear-Algebraical Technique to Rapidly Approximate Chemical Similarities J. Chem. Inf. Model. 2010, 50, 1075-1088
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1075-1088
    • Haque, I.S.1    Pande, V.S.2
  • 10
    • 34247228558 scopus 로고    scopus 로고
    • Bounds and algorithms for fast exact searches of chemical fingerprints in linear and sublinear time
    • DOI 10.1021/ci600358f
    • Swamidass, S. J.; Baldi, P. Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints in Linear and Sublinear Time J. Chem. Inf. Model. 2007, 47, 302-317 (Pubitemid 46615935)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.2 , pp. 302-317
    • Swamidass, S.J.1    Baldi, P.2
  • 11
    • 10044246048 scopus 로고    scopus 로고
    • Accelerated K-Means Clustering in Metric Spaces
    • Smellie, A. Accelerated K-Means Clustering in Metric Spaces J. Chem. Inf. Comput. Sci. 2004, 44, 1929-1935
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1929-1935
    • Smellie, A.1
  • 12
    • 65249127524 scopus 로고    scopus 로고
    • Compressed Binary Bit Trees: A New Data Structure for Accelerating Database Searching
    • Smellie, A. Compressed Binary Bit Trees: A New Data Structure For Accelerating Database Searching J. Chem. Inf. Model. 2009, 49, 257-262
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 257-262
    • Smellie, A.1
  • 14
    • 77952772341 scopus 로고    scopus 로고
    • Extended-connectivity fingerprints
    • Rogers, D.; Hahn, M. Extended-connectivity fingerprints J. Chem. Inf. Model 2010, 50, 742-754
    • (2010) J. Chem. Inf. Model , vol.50 , pp. 742-754
    • Rogers, D.1    Hahn, M.2
  • 15
    • 33845482367 scopus 로고    scopus 로고
    • Daylight Chemical Information Systems, Inc. (accessed May 1, 2011)
    • Fingerprints-Screening and Similarity; Daylight Chemical Information Systems, Inc.: 2008; http://www.daylight.com/dayhtml/doc/theory/theory.finger. html (accessed May 1, 2011).
    • (2008) Fingerprints-Screening and Similarity
  • 17
    • 30844443282 scopus 로고    scopus 로고
    • Molecular similarity and diversity in chemoinformatics: From theory to applications
    • DOI 10.1007/s11030-006-8697-1
    • Maldonado, A.; Doucet, J.; Petitjean, M.; Fan, B.-T. Molecular similarity and diversity in chemoinformatics: From theory to applications Mol. Divers 2006, 10, 39-79 (Pubitemid 43102376)
    • (2006) Molecular Diversity , vol.10 , Issue.1 , pp. 39-79
    • Maldonado, A.G.1    Doucet, J.P.2    Petitjean, M.3    Fan, B.-T.4
  • 19
    • 84877689037 scopus 로고    scopus 로고
    • (accessed 1 May 2011)
    • Mula, W. SSSE3: fast popcount. http://wm.ite.pl/articles/sse-popcount. html (accessed 1 May 2011), 2010.
    • (2010) SSSE3: Fast Popcount
    • Mula, W.1
  • 21
    • 0024662190 scopus 로고
    • Clustering a large number of compounds. 1. Establishing the method on an initial sample
    • Hodes, L. Clustering a large number of compounds. 1. Establishing the method on an initial sample J. Chem. Inf. Comput. Sci. 1989, 29, 66-71
    • (1989) J. Chem. Inf. Comput. Sci. , vol.29 , pp. 66-71
    • Hodes, L.1
  • 23
    • 78651310799 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Sayers, E. W. Database resources of the National Center for Biotechnology Information Nucleic Acids Res. 2011, 39, 38-51
    • (2011) Nucleic Acids Res. , vol.39 , pp. 38-51
    • Sayers, E.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.