NMR-based metabolomic investigations on the differential responses in adductor muscles from two pedigrees of Manila clam Ruditapes philippinarum to cadmium and zinc

Marine Drugs

Volumn 9, Issue 9, 2011, Pages 1566-1579

  Wu, Huifeng ^a   Liu, Xiaoli ^a,b   Zhao, Jianmin ^a   Yu, Junbao ^a  

^a YANTAI INSTITUTE OF COASTAL ZONE RESEARCH   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Biomonitor; Heavy metal; Metabolomics; NMR; Ruditapes philippinarum

Indexed keywords

4 AMINOBUTYRIC ACID; ALANINE; BRANCHED CHAIN AMINO ACID; CADMIUM; GLUTAMINE; HOMARINE; HYPOTAURINE; ISOLEUCINE; LEUCINE; PHOSPHORYLCHOLINE; SUCCINIC ACID; TISSUE EXTRACT; UNCLASSIFIED DRUG; VALINE; ZINC;

ADDUCTOR MUSCLE; ANIMAL TISSUE; ARTICLE; BIOACCUMULATION; BIOLOGICAL MONITORING; CLAM; CONTROLLED STUDY; ECOTOXICITY; ENVIRONMENTAL EXPOSURE; HEAVY METAL POISONING; INDICATOR ORGANISM; METABOLOMICS; MUSCLE TISSUE; NONHUMAN; PEDIGREE; POLLUTION MONITORING; PROTON NUCLEAR MAGNETIC RESONANCE; RUDITAPES PHILIPPINARUM; SENSITIVITY ANALYSIS; SPECIES DIFFERENCE;

BIVALVIA; EQUUS SUBG. HIPPOTIGRIS; VENERUPIS (RUDITAPES) PHILIPPINARUM;

EID: 80053322202     PISSN: None     EISSN: 16603397     Source Type: Journal    
DOI: 10.3390/md9091566     Document Type: Article

References (42)

1. Daviss, B. Growing pains for metabolomics. Scientist 2005, 19, 25-28. (Pubitemid 40704807)
2. Lindon, J.C.; Nicholson, J.K.; Holmes, E.; Everett, J.R. Metabonomics: Metabolic processes studied by NMR spectroscopy of biofluids. Concepts Magn. Reson. 2000, 12, 289-320.
3. Viant, M.R.; Eric, S.; Rosenblum, E.S.; Tjeerdema, R.S. Optimized method for the determination of phosphoarginine in abalone tissue by high-performance liquid chromatography. J. Chromatogr. B 2001, 765, 107-111. (Pubitemid 33055814)
4. 1H-NMR-based metabonomics. Nat. Med. 2002, 8, 1439-1444.
5. Bundy, J.G.; Spurgeon, D.J.; Svendsen, C.; Hankard, P.K.; Weeks, J.M.; Osborn, D.; Lindon, J.C.; Nicholson, J.K. Environmental metabonomics: Applying combination biomarker analysis in earthworms at a metal contaminated site. Ecotoxicology 2004, 13, 797-806. (Pubitemid 40380955)
6. 1H nuclear magnetic resonance spectroscopy and pattern recognition. Anal. Biochem. 2005, 339, 242-248.
7. 1H NMR metabolomics. Aquat. Toxicol. 2006, 76, 329-342.
8. 1H NMR metabolomics. Aquat. Toxicol. 2006, 77, 359-371.
9. Nicholson, J.K.; Timbrell, J.A.; Sadler, P.J. Mercury nephrotoxicity and the detection of abnormal urinary metabolite excretion patterns by high resolution proton nuclear magnetic resonance spectroscopy. Mol. Pharmacol. 1985, 27, 644-651.
10. Plumb, R.S.; Stumpf, C.L.; Granger, J.H.; Castro-Perez, J.; Haselden, J.N.; Dear, G.J. Use of liquid chromatography/time-of-flight mass spectrometry and multivariate statistical analysis shows promise for the detection of drug metabolites in biological fluids. Rapid Commun. Mass Spectrom. 2003, 17, 2632-2638. (Pubitemid 37498776)
11. 1H nuclear magnetic resonance spectroscopy of liver tissues. Anal. Biochem. 2003, 323, 26-32.
12. 1H NMR spectroscopy of urine combined with pattern recognition. J. Inorg. Biochem. 2005, 99, 644-651.
13. Jones, O.A.H.; Dondero, F.; Viarengo, A.; Griffin, J.L. Metabolic profiling of Mytilus galloprovincialis and its potential applications for pollution assessment. Mar. Ecol. Prog. Ser. 2008, 369, 169-179.
14. 1H NMR metabolomic study of the exposure of the marine mussel Mytilus edulis to atrazine, lindane, hypoxia and starvation. Metabolomics 2009, 5, 33-43.
15. Wu, H.; Wang, W.-X. NMR-based metabolomic studies on the toxicological effects of cadmium and copper on green mussels Perna viridis. Aquat. Toxicol. 2010, 100, 339-345.
16. 1H-NMR spectroscopy. Mar. Drugs 2010, 8, 2578-2596.
17. Lannig, G.; Eilers, S.; Pörtner, H.O.; Sokolova, I.M.; Bock, C. Impact of ocean acidification on energy metabolism of oyster, Crassostrea gigas - Changes in metabolic pathways and thermal response. Mar. Drugs 2010, 8, 2318-2339.
18. Gordon, B.R.; Leggat, W. Symbiodinium - Invertebrate symbioses and the role of metabolomics. Mar. Drugs 2010, 8, 2546-2568.
19. Ji, J.; Choi, H.J.; Ahn, I.-Y. Evaluation of Manila clam Ruditapes philippinarum as a sentinel species for metal pollution monitoring in estuarine tidal flats of Korea: Effects of size, sex, and spawning on baseline accumulation. Mar. Pollut. Bull. 2006, 52, 447-468.
20. Laing, I.; Child, A.R. Comparative tolerance of small juvenile palourdes (Tapes decussates L.) and Manila clams (Tapes philippinarum Adams & Reeve) to low temperature. J. Exp. Mar. Biol. Ecol. 1996, 195, 267-285.
21. Matozzo, V.; Ballarin, L.; Marin, M.G. Exposure of the clam Tapes philippinarum to 4-nonylphenol: Changes in anti-oxidant enzyme activities and re-burrowing capability. Mar. Pollut. Bull. 2004, 48, 563-571. (Pubitemid 38229758)
22. Hegaret, H.; Da Silva, P.M.; Wikfors, G.H.; Lambert, C.; de Bettignies, T.; Shumway, S.E.; Soudant, P. Hemocyte responses of Manila clams, Ruditapes philippinarum, with varying parasite, Perkinsus olseni, severity to toxic-algal exposures. Aquat. Toxicol. 2007, 84, 469-479. (Pubitemid 47336980)
23. Moraga, D.; Mdelgi-Lasram, E.; Romdhane, M.S.; El Abed, A.; Boutet, I.; Tanguy, A.; Auffret, M. Genetic responses to metal contamination in two clams: Ruditapes decussatus and Ruditapes philippinarum. Mar. Environ. Res. 2002, 54, 521-525. (Pubitemid 35286471)
24. Yan, X.; Zhang, G.; Yang, F.; Liang, J. A comparison of growth and development of Manila Clam (Ruditapes philippinarum) from two pedigrees (in Chinese). J. Dalian Fish. Univ. 2005, 20, 266-269.
25. Zhang, Y.; Yan, X.; Yao, T.; Huo, Z.; Yang, F.; Zhang, G. Study on population hybridization of two shell color strains of Manila clam Ruditapes philippinarum (in Chinese). South China Fish. Sci. 2008, 4, 27-32.
26. Liu, X.; Zhang, L.; You, L.; Yu, J.; Zhao, J.; Li, L.; Wang, Q.; Li, F.; Li, C.; Liu, D.; Wu, H. Differential toxicological effects induced by mercury in gills from three pedigrees of Manila clam Ruditapes philippinarum by NMR-based metabolomics. Ecotoxicology 2011, 20, 177-186.
27. Mao, T.Y.; Dai, M.X.; Peng, S.T.; Li, G.L. Temporal-spatial variation trend analysis of heavy metals (Cu, Zn, Pb, Cd, Hg) in Bohai Bay in 10 Years (in Chinese). J. Tianjin Univ. 2009, 9, 817-825.
28. Zhang, X. Investigation of pollution of Pb, Cd, Hg, As in sea water and deposit of Bohai Sea area (in Chinese). Heilongjiang Environ. J. 2001, 25, 87-90.
29. Wu, H.; Wang, W.-X. Tissue-specific toxicological effects of cadmium in green mussel (Perna viridis): Nuclear magnetic resonance-based metabolomics study, Environ. Toxicol. Chem. 2011, 30, 806-812.
30. Wu, H.; Southam, A.D.; Hines, A.; Viant, M.R. High throughput tissue extraction protocol for NMR and mass spectrometry based metabolomics. Anal. Biochem. 2008, 372, 204-212.
31. Lin, C.Y.; Wu, H.; Tjeerdema, R.S.; Viant, M.R. Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics. Metabolomics 2007, 3, 55-67. (Pubitemid 46443556)
32. Viant, M.R.; Rosenblum, E.S.; Tjeerdema, R.S. NMR-based metabolomics: A powerful approach for characterizing the effects of environmental stressors on organism health. Environ. Sci. Technol. 2003, 37, 4982-4989. (Pubitemid 37369890)
33. Preston, R.L. Transport of amino acids by marine invertebrates. Comp. Physiol. Biochem. 2005, 265, 410-421.
34. Liu, X.; Zhang, L.; You, L.; Cong, M.; Zhao, J.; Wu, H.; Li, C.; Liu, D.; Yu, J. Toxicological responses to acute mercury exposure for three species of Manila clam Ruditapes philippinarum by NMR-based metabolomics. Environ. Toxicol. Pharmacol. 2011, 31, 323-332.
35. Fan, W.M.T. Metabolite profiling by one- and two-dimensional NMR analysis of complex mixtures. Prog. Nucl. Magn. Reson. 1996, 28, 161-219.
36. Purohit, P.V.; Rocke, D.M.; Viant, M.R.; Woodruff, D.L. Discrimination models using variance-stabilizing transformation of metabolomic NMR data. OMICS J. Integr. Biol. 2004, 8, 118-130. (Pubitemid 38988609)
37. Parsons, H.M.; Ludwig, C.; Gunther, U.L.; Viant, M.R. Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation. BMC Bioinform. 2007, 8, 234.
38. Xu, L. Methods of Chemometrics; Science Press: Beijing, China, 2004; pp. 221-227.
39. Keun, H.C.; Ebbels, T.M.D.; Antti, H.; Bollard, M.E.; Beckonert, O.; Holmes, E.; Lindon, J.C.; Nicholson, J.K. Improved analysis of multivariate data by variable stability scaling: Application to NMR-based metabolic profiling. Anal. Chim. Acta 2003, 490, 265-276. (Pubitemid 37281308)
40. Rubingh, C.M.; Bijlsma, S.; Derks, E.P.A.; Bobeldijk, I.; Verheij, E.R.; Kochhar, S.; Smilde, A.K. Assessing the performance of statistical validation tools for megavariate metabolomics data. Metabolomics 2006, 2, 53-61. (Pubitemid 44184264)
41. Lindon, J.C.; Nicholson, J.K.; Everett, J.R. NMR spectroscopy of biofluid. Ann. Rep. NMR Spectrosc. 1999, 38, 1-88.
42. Katsiadaki, I.; Williams, T.D.; Ball, J.S.; Bean, T.P.; Sanders, M.B.; Wu, H.; Santos, E.M.; Brown, M.M.; Baker, P.; Ortega, F.; et al. Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol. Aquat. Toxicol. 2009, 97, 174-187.