Pore-spanning lipid membrane under indentation by a probe tip: A molecular dynamics simulation study

Langmuir

Volumn 27, Issue 19, 2011, Pages 11930-11942

  Huang, Chen Hsi ^a   Hsiao, Pai Yi ^a   Tseng, Fan Gang ^a   Fan, Shih Kang ^b   Fu, Chien Chung ^a   Pan, Rong Long ^a  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b NATIONAL CHIAO TUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BI-LAYERED STRUCTURE; HYDROPHOBIC SUBSTRATE; INTERDIGITATED STRUCTURE; LARGE STRAINS; LIPID MEMBRANES; LIPID MOLECULES; MACROSCOPIC PROPERTIES; MICROSCOPIC STRUCTURES; MOLECULAR DYNAMICS SIMULATIONS; NEMATIC ORDER; PHYSICAL QUANTITIES; POINT OF CONTACT; PORE REGION; PROBE TIPS; STRUCTURAL TRANSITIONS; TILT ANGLE;

DYNAMICS; LIPIDS; MEMBRANES; NANOPORES;

MOLECULAR DYNAMICS;

ARTICLE; ARTIFICIAL MEMBRANE; CHEMICAL PHENOMENA; MOLECULAR DYNAMICS; NANOPORE;

HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; MEMBRANES, ARTIFICIAL; MOLECULAR DYNAMICS SIMULATION; NANOPORES;

EID: 80053308640     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la201977d     Document Type: Article

References (69)

1. Alberts, B.; Bray, D.; Hopkin, K.; Johnson, A. Essential Cell Biology; Garland Science: New York, 2010.
2. Gennis, R. B. Biomembranes: Molecular Structure and Function; Springer-Verlag: New York, 1989.
3. Ellison, L.; Michel, D.; Barmes, F.; Cleaver, D. Phys. Rev. Lett. 2006, 97, 237801
4. Lee, W.; Mezzenga, R.; Fredrickson, G. Phys. Rev. Lett. 2007, 99, 187801
5. Angelov, B.; Angelova, A.; Garamus, V. M.; Lebas, G.; Lesieur, S.; Ollivon, M.; Funari, S. S.; Willumeit, R.; Couvreur, P. J. Am. Chem. Soc. 2007, 129, 13474
6. Lenz, O.; Schmid, F. Phys. Rev. Lett. 2007, 98, 058104
7. Stevens, M.; Hoh, J.; Woolf, T. Phys. Rev. Lett. 2003, 91, 188102
8. Grafmüller, A.; Shillcock, J.; Lipowsky, R. Phys. Rev. Lett. 2007, 98, 218101
9. Li, S.; Zhang, X.; Dong, W.; Wang, W. Langmuir 2008, 24, 9344
10. Stevens, M. J. J. Chem. Phys. 2004, 121, 11942
11. Lenz, O.; Schmid, F. J. Mol. Liq. 2005, 117, 147
12. Kranenburg, M.; Venturoli, M.; Smit, B. J. Phys. Chem. B 2003, 107, 11491
13. Kranenburg, M.; Vlaar, M.; Smit, B. Biophys. J. 2004, 87, 1596
14. Furuike, S.; Levadny, V. G.; Li, S. J.; Yamazaki, M. Biophys. J. 1999, 77, 2015
15. Koynova, R.; Caffrey, M. Biochim. Biophys. Acta, Rev. Biomembr. 1998, 1376, 91
16. Venturoli, M.; Maddalenasperotto, M.; Kranenburg, M.; Smit, B. Phys. Rep. 2006, 437, 1
17. Stora, T.; Dienes, Z.; Vogel, H.; Duschl, C. Langmuir 2000, 16, 5471
18. Lahiri, J.; Kalal, P.; Frutos, A. G.; Jonas, S. T.; Schaeffler, R. Langmuir 2000, 16, 7805
19. Lin, Y.; Huang, K.; Chiang, J.; Yang, C.; Lai, T. Sens. Actuators, B 2006, 117, 464
20. Simon, A.; Girard-Egrot, A.; Sauter, F.; Pudda, C.; Picollet D'Hahan, N.; Blum, L.; Chatelain, F.; Fuchs, A. J. Colloid Interface Sci. 2007, 308, 337
21. Maurer, J. A.; White, V. E.; Dougherty, D. A.; Nadeau, J. L. Biosens. Bioelectron. 2007, 22, 2577
22. Chang, J. M.; Tseng, F. G.; Chieng, C. C. IEEE Trans. Nanobiosci. 2010, 9, 289
23. Safinya, C. R.; Roux, D.; Smith, G. S.; Sinha, S. K.; Dimon, P.; Clark, N. A.; Bellocq, A. M. Phys. Rev. Lett. 1986, 57, 2718
24. Nagle, J. F.; Tristram-Nagle, S. Biochim. Biophys. Acta, Rev. Biomembr. 2000, 1469, 159
25. Salditt, T.; Li, C.; Spaar, A.; Mennicke, U. Eur. Phys. J. E 2002, 7, 105
26. Salditt, T. Curr. Opin. Struct. Biol. 2003, 13, 467
27. Miller, C. E.; Majewski, J.; Gog, T.; Kuhl, T. L. Phys. Rev. Lett. 2005, 94, 238104
28. Novakova, E.; Giewekemeyer, K.; Salditt, T. Phys. Rev. E 2006, 74, 051911
29. Sackmann, E. Science 1996, 271, 43
30. Beerlink, A.; Wilbrandt, P. J.; Ziegler, E.; Carbone, D.; Metzger, T. H.; Salditt, T. Langmuir 2008, 24, 4952
31. Hennesthal, C.; Steinem, C. J. Am. Chem. Soc. 2000, 122, 8085
32. McGeoch, J. E. M.; McGeoch, M. W.; Carter, D. J. D.; Shuman, R. F.; Guidotti, G. Med. Biol. Eng. Comput. 2000, 38, 113
33. Trojanowicz, M. Fresenius' J. Anal. Chem. 2001, 371, 246
34. Mey, I.; Stephan, M.; Schmitt, E. K.; Muller, M. M.; Ben Amar, M.; Steinem, C.; Janshoff, A. J. Am. Chem. Soc. 2009, 131, 7031
35. Gonçalves, R. P.; Agnus, G.; Sens, P.; Houssin, C.; Bartenlian, B.; Scheuring, S. Nat. Methods 2006, 3, 1007
36. Kwok, R.; Evans, E. Biophys. J. 1981, 35, 637
37. Evans, E.; Needham, D. J. Phys. Chem. 1987, 91, 4219
38. Needham, D.; McIntosh, T. J.; Evans, E. Biochemistry 1988, 27, 4668
39. Needham, D.; Nunn, R. S. Biophys. J. 1990, 58, 997
40. Rawicz, W.; Olbrich, K. C.; McIntosh, T.; Needham, D.; Evans, E. Biophys. J. 2000, 79, 328
41. Evans, E.; Heinrich, V.; Ludwig, F.; Rawicz, W. Biophys. J. 2003, 85, 2342
42. Tieleman, D. P.; Leontiadou, H.; Mark, A. E.; Marrink, S. J. J. Am. Chem. Soc. 2003, 125, 6382
43. Leontiadou, H.; Mark, A. E.; Marrink, S. J. Biophys. J. 2004, 86, 2156
44. Neder, J. r.; West, B.; Nielaba, P.; Schmid, F. J. Chem. Phys. 2010, 132, 115101
45. Steltenkamp, S.; Müller, M. M.; Deserno, M.; Hennesthal, C.; Steinem, C.; Janshoff, A. Biophys. J. 2006, 91, 217
46. Fine, T.; Mey, I.; Rommel, C.; Wegener, J.; Steinem, C.; Janshoff, A. Soft Matter 2009, 5, 3262
47. Chandross, M.; Lorenz, C. D.; Stevens, M. J.; Grest, G. S. Langmuir 2008, 24, 1240
48. Chandross, M.; Lorenz, C. D.; Stevens, M. J.; Grest, G. S. ASME J. Manuf. Sci. Eng. 2010, 132, 030916
49. Wallace, E. J.; Sansom, M. S. P. Nano Lett. 2008, 8, 2751
50. Shelley, J. C.; Shelley, M. Y.; Reeder, R. C.; Bandyopadhyay, S.; Moore, P. B.; Klein, M. L. J. Phys. Chem. B 2001, 105, 9785
51. Bennun, S. V.; Dickey, A. N.; Xing, C.; Faller, R. Fluid Phase Equilib. 2007, 261, 18
52. Español, P.; Warren, P. B. Europhys. Lett. 1995, 30, 191
53. Groot, R. D.; Warren, P. B. J. Chem. Phys. 1997, 107, 4423
54. Malevanets, A.; Kapral, R. J. Chem. Phys. 2000, 112, 7260
55. Gompper, G.; Ihle, T.; Kroll, D.; Winkler, R. In Advanced Computer Simulation Approaches for Soft Matter Sciences III; Holm, C.; Kremer, K., Eds.; Springer: Berlin, 2009; Vol. 221, p 1.
56. Ovalle-García, E.; Torres-Heredia, J. J.; Antillón, A.; Ortega-Blake, I. J. Phys. Chem. B 2011, 115, 4826
57. Helm, C.; Israelachvili, J.; McGuiggan, P. Science 1989, 246, 919
58. Nose, S. Mol. Phys. 1984, 52, 255
59. Nose, S. J. Chem. Phys. 1984, 81, 511
60. The simulations were run using the LAMMPS package (http://lammps.sandia. gov/).
61. Martyna, G. J.; Tobias, D. J.; Klein, M. L. J. Chem. Phys. 1994, 101, 4177
62. de Gennes, P. G.; Prost, J. The Physics of Liquid Crystals; Clarendon Press: Oxford, U.K., 1993.
63. Matsuki, H.; Okuno, H.; Sakano, F.; Kusube, M.; Kaneshina, S. Biochim. Biophys. Acta, Biomembr. 2005, 1712, 92
64. Nagle, J. F.; Zhang, R. T.; TristramNagle, S.; Sun, W. J.; Petrache, H. I.; Suter, R. M. Biophys. J. 1996, 70, 1419
65. Tristramnagle, S.; Zhang, R.; Suter, R. M.; Worthington, C. R.; Sun, W. J.; Nagle, J. F. Biophys. J. 1993, 64, 1097
66. Tenchov, B.; Koynova, R.; Rapp, G. Biophys. J. 2001, 80, 1873
67. McIntosh, T. J. Biophys. J. 1980, 29, 237
68. Kocun, M.; Mueller, W.; Maskos, M.; Mey, I.; Geil, B.; Steinem, C.; Janshoff, A. Soft Matter 2010, 6, 2508
69. Norouzi, D.; Muller, M. M.; Deserno, M. Phys. Rev. E 2006, 74, 061914