Comparison of penalty functions for sparse canonical correlation analysis

Computational Statistics and Data Analysis

Volumn 56, Issue 2, 2012, Pages 245-254

  Chalise, Prabhakar ^a   Fridley, Brooke L ^a  

^a MAYO CLINIC   (United States)

Author keywords

BIC; Elastic net; Lasso; MRNA expression; Penalty; SCAD; SCCA; SNP

Indexed keywords

BIC; ELASTIC-NET; LASSO; MRNA EXPRESSION; PENALTY; SCAD; SCCA; SNP;

COVARIANCE MATRIX;

GENES;

EID: 80053274374     PISSN: 01679473     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.csda.2011.07.012     Document Type: Article

References (24)

1. A. Antoniadis Wavelets in statistics: a review with discussion Journal of the Italian Statistical Association 6 1997 97 144
2. Leo Breiman Better subset regression using the non-negative Garrote Technometrics 37 1995 373 384
3. David L. Donoho, and Iain M. Johnstone Ideal spatial adaptation by wavelet shrinkage Biometrika 81 1994 425 455
4. David L. Donoho, and Iain M. Johnstone Wavelet shrinkage: asymptopia? Journal of Royal Statistical Society 57 1995 301 369
5. Jianqing Fan Comments on wavelets in statistics: a review Journal of the Italian Statistical Association 6 1997 131 138
6. Jianqing Fan, and Runze Li Variable selection via nonconcave penalized likelihood and its oracle properties Journal of American Statistical Association 96 2001 1348 1360 (Pubitemid 33695585)
7. W.J. Gauderman, C. Murcray, F. Gilliand, and D.V. Conti Testing association between disease and multiple SNPs in a candidate gene Genetic Epidemiology 31 2007 383 395 (Pubitemid 47051001)
8. Arthur E. Hoerl, and Robert W. Kennard Ridge regression: biased estimation for non orthogonal problems Technometrics 12 1970 55 57
9. Harold Hotelling Relations between two sets of variants Biometrika 28 1936 321 377
10. Kim-Anh Le Cao, G.P. Martin Pascal, Robert Granie Christine, and Philippe Besse Sparse canonical methods for biological data integration: application to a cross-platform study BMC Bioinformatics 10 2009
11. L. Li, B. Fridley, K. Kalari, G. Jenkins, A. Batzler, and S. Safgren Gemcitabine and cytosine arabinoside cytotoxicity: association with lymphoblastoid cell expression Cancer Research 68 2008 7050 7058
12. L. Li, B. Fridley, K. Kalari, G. Jenkins, A. Batzler, and R.M. Weinshilboum Gemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers PLoS One 4 2009 e7765
13. Anastasia Lykou, and Joe Whittaker Sparse CCA using a lasso with positivity constraints Computational Statistics and Data Analysis 2009
14. N. Niu, Y. Qin, B.L. Fridley, J. Hou, K.R. Kalari, M. Zhu, T.Y. Wu, and G.D. Jenkins Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines Genome Res 20 2010 1482 1492
15. Elena Parkhomenko, David Tritchler, and Joseph Beyene Sparse canonical correlation analysis with application to genomic data integration Statistical Application s in Genetics and Molecular Biology 8 2009
16. A. Rinaldo, S.A. Bacanu, B. Devlin, V. Sonpar, L. Wasserman, and K. Roeder Characterization of multilocus linkage disequilibrium Genetic Epidemiology 28 2005 193 206 (Pubitemid 40404574)
17. P. Scheet, and M.A. Stephens Fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase The American Journal of Human Genetics 78 2006 629 644
18. Robert Tibshirani Regression shrinkage and selection via the lasso Journal of Royal Statistical Society B Series 58 1996 267 288
19. H. Vinod Canonical ridge and econometrics of joint production Journal of Econometrics 4 1976 117 166
20. Sandra Waaijenborg, Philip WittHamer, and H. Zwinderman Aeiko Quantifying the association between gene expression and DNA-markers by penalized canonical correlation analysis Statistical Applications in Genetics and Molecular Biology 7 2008
21. Daniela M. Witten, and Robert J. Tibshirani Extension of sparse canonical correlation analysis with application to genomic data Statistical Applications in Genetics and Molecular Biology 8 2009
22. Wu R.A.I. Zhijin, R. Gentleman, and F. Martinez-Murillo A model-based background adjustment for oligonucleotide expression arrays Forrest Spencer Journal of the American Statistical Association 99 2004 909
23. Jianhui Zhou, and Xuming He Dimension reduction based on constrained canonical correlation and variable filtering The Annals of Statistics 36 2008 1649 1668
24. Hui Zou, and Trevor Hastie Regularization and variable selection via the elastic net Journal of Royal Statistical Society 67 2005 301 320 (Pubitemid 40465877)