Smith-Waterman alignment of huge sequences with GPU in linear space

Proceedings - 25th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2011

Volumn , Issue , 2011, Pages 1199-1211

  Sandes, Edans Flavius De O ^a   De Melo, Alba Cristina M A ^a  

^a UNIVERSITY OF BRASILIA   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BASE PAIRS; CROSS-SPECIES; EXACT METHODS; EXACT RESULTS; HIGH PERFORMANCE COMPUTING; LINEAR SPACES; MEMORY REQUIREMENTS; OPTIMAL ALIGNMENTS; SMITH-WATERMAN; SMITH-WATERMAN ALGORITHM;

ALGORITHMS; BIOINFORMATICS; CHROMOSOMES; COMPUTER SOFTWARE SELECTION AND EVALUATION; DISTRIBUTED PARAMETER NETWORKS; OPTIMIZATION; PROGRAM PROCESSORS;

ALIGNMENT;

EID: 80053237428     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IPDPS.2011.114     Document Type: Conference Paper

References (20)

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