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Volumn 12, Issue 5, 2011, Pages 463-473

Orthodisease: Tracking disease gene orthologs across 100 species

Author keywords

Database; Disease; Gene duplication; Orthology

Indexed keywords

ANIMAL; ARTICLE; CLASSIFICATION; COMPUTER PROGRAM; DISEASE MODEL; DISEASES; GENETIC DATABASE; GENETIC PREDISPOSITION; GENETICS; GENOME; HUMAN; PHYLOGENY; SPECIES DIFFERENCE;

EID: 80053215377     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbr024     Document Type: Article
Times cited : (14)

References (29)
  • 1
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch W. Distinguishing homologous from analogous proteins. System Zool 1970;19:99-113.
    • (1970) System Zool , vol.19 , pp. 99-113
    • Fitch, W.1
  • 2
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and inparalogs from pairwise species comparisons
    • Remm M, Storm C, Sonnhammer E. Automatic clustering of orthologs and inparalogs from pairwise species comparisons. J Mol Biol 2001;314:1041-52.
    • (2001) J Mol Biol , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.2    Sonnhammer, E.3
  • 3
    • 0036889686 scopus 로고    scopus 로고
    • Orthology, paralogy and proposed classification for paralog subtypes
    • Sonnhammer E, Koonin E. Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet 2002; 18:619-20.
    • (2002) Trends Genet , vol.18 , pp. 619-620
    • Sonnhammer, E.1    Koonin, E.2
  • 4
    • 77950819120 scopus 로고    scopus 로고
    • Getting started in Gene Orthology and functional analysis
    • Fang G, Bhardwaj N, Robilotto R, et al. Getting started in Gene Orthology and functional analysis. Plos Comput Biol 2010;6:e1000703.
    • (2010) Plos Comput Biol , vol.6
    • Fang, G.1    Bhardwaj, N.2    Robilotto, R.3
  • 5
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul S, Madden T, Schaffer A, etal. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schaffer, A.3
  • 6
    • 0032509179 scopus 로고    scopus 로고
    • Comparison of the complete protein sets of worm and yeast: orthology and divergence
    • Chervitz S, Aravind L, Sherlock G, et al. Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 1998;282:2022-8.
    • (1998) Science , vol.282 , pp. 2022-2028
    • Chervitz, S.1    Aravind, L.2    Sherlock, G.3
  • 7
    • 0034739818 scopus 로고    scopus 로고
    • Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale
    • Xie T, Ding D. Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale. Gene 2000;261:305-10.
    • (2000) Gene , vol.261 , pp. 305-310
    • Xie, T.1    Ding, D.2
  • 8
    • 0036737630 scopus 로고    scopus 로고
    • Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs
    • Nembaware V. Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs. Genome Res 2002;12:1370-6.
    • (2002) Genome Res , vol.12 , pp. 1370-1376
    • Nembaware, V.1
  • 10
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert C Jr, Roos D. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003; 13:2178-89.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.2    Roos, D.3
  • 11
    • 78651316211 scopus 로고    scopus 로고
    • OMA 2011 orthology inference among 1000 complete genomes
    • Altenhoff A, Schneider A, Gonnet G, et al. OMA 2011: orthology inference among 1000 complete genomes. Nucleic Acids Res 2011;39(Suppl. 1):D289-94.
    • (2011) Nucleic Acids Res , vol.39 , Issue.SUPPL. 1
    • Altenhoff, A.1    Schneider, A.2    Gonnet, G.3
  • 12
    • 75549086594 scopus 로고    scopus 로고
    • InParanoid 7 new algorithms and tools for eukaryotic orthology analysis
    • Östlund G, Schmitt T, Forslund K, et al. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res 2010;38(Suppl. 1):D196-203.
    • (2010) Nucleic Acids Res , vol.38 , Issue.SUPPL. 1
    • Östlund, G.1    Schmitt, T.2    Forslund, K.3
  • 13
    • 13444266370 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    • Hamosh A, Scott A, Amberger J, et al. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 2005; 33(Suppl. 1):D514-17.
    • (2005) Nucleic Acids Res , vol.33 , Issue.SUPPL. 1
    • Hamosh, A.1    Scott, A.2    Amberger, J.3
  • 14
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt KD, Maglott DR. RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 2001;29: 137-40.
    • (2001) Nucleic Acids Res , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 15
    • 76249116971 scopus 로고    scopus 로고
    • The Human Gene Mutation Database:providing a comprehensive central mutation database for molecular diagnostics and personalized genomics
    • Stenson PD, Ball EV, Howells K, et al. The Human Gene Mutation Database:providing a comprehensive central mutation database for molecular diagnostics and personalized genomics. Hum Genomics 2009;4:69-72.
    • (2009) Hum Genomics , vol.4 , pp. 69-72
    • Stenson, P.D.1    Ball, E.V.2    Howells, K.3
  • 16
    • 78049480691 scopus 로고    scopus 로고
    • GeneCards Version 3: the human gene integrator
    • Advanced access published 5 August doi: 10. 1093/database/
    • Safran M, Dalah I, Alexander J, et al. GeneCards Version 3: the human gene integrator. Database. Advanced access published 5 August 2010; doi: 10.1093/database/baq020.
    • (2010) Database
    • Safran, M.1    Dalah, I.2    Alexander, J.3
  • 17
    • 0033981361 scopus 로고    scopus 로고
    • Medical significance of Caenorhabditis elegans
    • Aboobaker AA, Blaxter ML. Medical significance of Caenorhabditis elegans. Ann Med 2000;32:23-30.
    • (2000) Ann Med , vol.32 , pp. 23-30
    • Aboobaker, A.A.1    Blaxter, M.L.2
  • 18
    • 0036081081 scopus 로고    scopus 로고
    • Homophila: human disease gene cognates in Drosophila
    • Chien S, Reiter L, Bier E, et al. Homophila: human disease gene cognates in Drosophila. Nucleic Acids Res 2002;30: 149-51.
    • (2002) Nucleic Acids Res , vol.30 , pp. 149-151
    • Chien, S.1    Reiter, L.2    Bier, E.3
  • 19
    • 0035165581 scopus 로고    scopus 로고
    • The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species
    • Quackenbush J, Cho J, Lee D, et al. The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res 2001;29: 159-64.
    • (2001) Nucleic Acids Res , vol.29 , pp. 159-164
    • Quackenbush, J.1    Cho, J.2    Lee, D.3
  • 20
    • 3442889367 scopus 로고    scopus 로고
    • OrthoDisease: a database of human disease orthologs
    • O'Brien K, Westerlund I, Sonnhammer E. OrthoDisease: a database of human disease orthologs. Hum Mutat 2004;24: 112-19.
    • (2004) Hum Mutat , vol.24 , pp. 112-119
    • O'Brien, K.1    Westerlund, I.2    Sonnhammer, E.3
  • 21
    • 0031021132 scopus 로고    scopus 로고
    • Mouse models of human disease. Part I: techniques and resources for genetic analysis in mice.
    • Bedell MA, Jenkins NA, Copeland NG. Mouse models of human disease. Part I: techniques and resources for genetic analysis in mice. Genes Dev 1997;11:1-10.
    • (1997) Genes Dev , vol.11 , pp. 1-10
    • Bedell, M.A.1    Jenkins, N.A.2    Copeland, N.G.3
  • 22
    • 42949160024 scopus 로고    scopus 로고
    • From protein-disease associations to disease informatics
    • Dalkilic M, Costello J, Clark W, et al. From protein-disease associations to disease informatics. Front Biosci 2008;13: 3391-407.
    • (2008) Front Biosci , vol.13 , pp. 3391-3407
    • Dalkilic, M.1    Costello, J.2    Clark, W.3
  • 23
    • 3543106033 scopus 로고    scopus 로고
    • Genome-wide identification of genes likely to be involved in human genetic disease
    • Lopez-Bigas N, Ouzounis CA. Genome-wide identification of genes likely to be involved in human genetic disease. Nucleic Acids Res 2004;32:3108-14.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3108-3114
    • Lopez-Bigas, N.1    Ouzounis, C.A.2
  • 24
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu Z, Steinmetz L, Gu X, et al. Role of duplicate genes in genetic robustness against null mutations. Nature 2003;421: 63.
    • (2003) Nature , vol.421 , pp. 63
    • Gu, Z.1    Steinmetz, L.2    Gu, X.3
  • 25
    • 0141853996 scopus 로고    scopus 로고
    • Asymmetric sequence divergence of duplicate genes
    • Conant G, Wagner A. Asymmetric sequence divergence of duplicate genes. Genome Res 2003;13:2052-8.
    • (2003) Genome Res , vol.13 , pp. 2052-2058
    • Conant, G.1    Wagner, A.2
  • 26
    • 34447637417 scopus 로고    scopus 로고
    • Mouse duplicate genes are as essential as singletons
    • Liao B, Zhang J. Mouse duplicate genes are as essential as singletons. Trends Genet 2007;23:378-381.
    • (2007) Trends Genet , vol.23 , pp. 378-381
    • Liao, B.1    Zhang, J.2
  • 27
    • 70349850981 scopus 로고    scopus 로고
    • Benchmarking homology detection procedures with low complexity filters
    • Forslund K, Sonnhammer EL. Benchmarking homology detection procedures with low complexity filters. Bioinformatics 2009;25:2500-2505.
    • (2009) Bioinformatics , vol.25 , pp. 2500-2505
    • Forslund, K.1    Sonnhammer, E.L.2
  • 29
    • 45749086679 scopus 로고    scopus 로고
    • The amphioxus genome and the evolution of the chordate karyotype
    • Putnam NH, Butts T, Ferrier DEK, et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 2008;453:1064-1071.
    • (2008) Nature , vol.453 , pp. 1064-1071
    • Putnam, N.H.1    Butts, T.2    Ferrier, D.E.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.