메뉴 건너뛰기




Volumn 20, Issue 10, 2011, Pages 1668-1674

Determination of protein fold class from Raman or Raman optical activity spectra using random forests

Author keywords

helix; sheet; Machine learning; Protein structure; Vibrational spectroscopy

Indexed keywords

AMIDE;

EID: 80053151351     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1002/pro.695     Document Type: Article
Times cited : (15)

References (15)
  • 1
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247:536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 5
    • 0036399145 scopus 로고    scopus 로고
    • Unfolded proteins studied by Raman optical activity
    • DOI 10.1016/S0065-3233(02)62005-4
    • Barron LD, Hecht L, Blanch EW (2002) Unfolded proteins studied by Raman Optical Activity. Adv Prot Chem 62:51-90. (Pubitemid 35204868)
    • (2002) Advances in Protein Chemistry , vol.62 , pp. 51-90
    • Barron, L.D.1    Blanch, E.W.2    Hecht, L.3
  • 6
    • 77955151599 scopus 로고    scopus 로고
    • Accurate determination of protein secondary structure content from Raman and Raman Optical Activity spectra
    • Kinalwa MN, Blanch EW, Doig AJ (2010) Accurate determination of protein secondary structure content from Raman and Raman Optical Activity spectra. Anal Chem 82:6347-6349.
    • (2010) Anal Chem , vol.82 , pp. 6347-6349
    • Kinalwa, M.N.1    Blanch, E.W.2    Doig, A.J.3
  • 7
    • 84887006810 scopus 로고
    • A nonlinear mapping for data structure analysis
    • Sammon JW (1969) A nonlinear mapping for data structure analysis. IEEE Trans Comp C18:401-409.
    • (1969) IEEE Trans Comp , vol.C18 , pp. 401-409
    • Sammon, J.W.1
  • 8
    • 3042850001 scopus 로고    scopus 로고
    • A study of α-helix hydration in polypeptides, proteins and viruses
    • McColl IH, Blanch EW, Hecht L, Barron LD (2004) A study of α-helix hydration in polypeptides, proteins and viruses. J Am Chem Soc 126:8181-8188.
    • (2004) J Am Chem Soc , vol.126 , pp. 8181-8188
    • McColl, I.H.1    Blanch, E.W.2    Hecht, L.3    Barron, L.D.4
  • 9
    • 0033516702 scopus 로고    scopus 로고
    • Raman optical activity of filamentous bacteriophages: Hydration of α-helices
    • DOI 10.1006/jmbi.1999.2871
    • Blanch EW, Bell, A.F., Hecht, L., Day, L.A. and Barron, L.D. (1999) Raman Optical Activity of filamentous bacteriophages: Hydration of α-Helices. J Mol Biol 290:1-7. (Pubitemid 29308571)
    • (1999) Journal of Molecular Biology , vol.290 , Issue.1 , pp. 1-7
    • Blanch, E.W.1    Bell, A.F.2    Hecht, L.3    Day, L.A.4    Barron, L.D.5
  • 10
    • 0034118337 scopus 로고    scopus 로고
    • Solution structure and dynamics of biomolecules from Ramam optical activity
    • DOI 10.1016/S0079-6107(99)00017-6, PII S0079610799000176
    • Barron LD, Hecht L, Blanch EW, Bell AF (2000) Solution structure and dynamics of biomolecules from Raman optical activity. Prog Biophys Mol Biol 73:1-49. (Pubitemid 30252105)
    • (2000) Progress in Biophysics and Molecular Biology , vol.73 , Issue.1 , pp. 1-49
    • Barron, L.D.1    Hecht, L.2    Blanch, E.W.3    Bell, A.F.4
  • 11
    • 33749057923 scopus 로고    scopus 로고
    • Structure and behaviour of biomolecules from Raman Optical Activity
    • Barron LD (2006) Structure and behaviour of biomolecules from Raman Optical Activity. Curr Opin Struct Biol 16:638-643.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 638-643
    • Barron, L.D.1
  • 12
    • 33646416198 scopus 로고    scopus 로고
    • Two-dimensional correlation analysis of Raman optical activity data on the α-helixto β-sheet transition in poly(L-lysine)
    • Ashton LA, Czarnik-Matusewicz B, Hecht L, Hyde J, Blanch EW (2006) Two-dimensional correlation analysis of Raman optical activity data on the α-helixto β-sheet transition in poly(L-lysine) Mol Phys 104:1429-1445.
    • (2006) Mol Phys , vol.104 , pp. 1429-1445
    • Ashton, L.A.1    Czarnik-Matusewicz, B.2    Hecht, L.3    Hyde, J.4    Blanch, E.W.5
  • 13
  • 15
    • 33847096395 scopus 로고    scopus 로고
    • Bias in random forest variable importance measures: Illustrations, sources and a solution
    • Strobl C, Boulesteix A-L, Zeileis A, Hothorn T (2007) Bias in random forest variable importance measures: illustrations, sources and a solution. BMC Bioinf 8:25-46.
    • (2007) BMC Bioinf , vol.8 , pp. 25-46
    • Strobl, C.1    Boulesteix, A.-L.2    Zeileis, A.3    Hothorn, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.