Use of a mitochondrial COI sequence to identify species of the subtribe Aphidina (Hemiptera, Aphididae)

ZooKeys

Volumn 122, Issue , 2011, Pages 1-17

  Wang, Jian Feng ^a,b   Jiang, Li Yun ^a   Qiao, Ge Xia ^a  

^a INSTITUTE OF ZOOLOGY   (China)

^b SHENYANG UNIVERSITY   (China)

Author keywords

Aphidina; Aphidinae; Hemiptera; Identification; Interspecific divergence; Intraspecific divergenuce; Mitochondrial COI gene

Indexed keywords

APHIDIDAE; APHIDINAE; HEMIPTERA;

EID: 80053081609     PISSN: 13132989     EISSN: 13132970     Source Type: Journal    
DOI: 10.3897/zookeys.122.1256     Document Type: Article

References (52)

1. Anstead JA, Burd JD, Shufran KA (2002) Mitochondrial DNA sequence divergence among Schizaphis graminum (Homoptera: Aphididae) clones from cultivated and non-cultivated hosts: haplotype and host associations. Bulletin Entomological Research 92: 17-24.
2. Ball SL, Hebert PDN (2005) Biological identifications of mayflies (Ephemeroptera) using DNA barcodes. Journal of the North American Benthological Society 24(3): 508-524.
3. Barrett RDH, Hebert PDN (2005) Identifying spiders through DNA barcodes. Canadian Journal of Zoology 83(3): 481-491. doi:10.1139/z05-024
4. Blackman RL, Eastop VF (2000) Aphids on the world's crops. The Natural History Museum, London, 466pp.
5. Blackman RL, Eastop VF (2006) Aphids on the world's Herbaceous plants and shrubs. The Natural History Museum, London, 1439pp.
6. Börner C (1952) Eurpoae centralis aphides. Mitteilungen der Thüringischen Botanischen Gesellschaft, 4(3): 1-259.
7. Brown J, Miller S, Horak M (2003) Studies on new Guinea moths. 2. description of a new species of Xenothictis meyrick (Lepidoptera: Tortricidae: Archipini). Proceedings of the Entomological Society of Washington 105(4): 1043-1050.
8. Cardoso A, Vogler AP (2005) DNA taxonomy, phylogeny and Pleistocene diversification of the Cicindela hybrida species group (Coleoptera: Cicindelidae). Molecular Ecology 14(11): 3531-3546. doi:10.1111/j.1365-294X.2005.02679.x
9. Clare EL, Lim BK, Engstrom MD, Eger JL, Hebert PN (2007) DNA barcoding of Neotropical bats: species identification and discovery within Guyana. Molecular Ecology Notes 7(2): 184-190.
10. Coeur d'acier A, Jousselin E, Martin JF, Rasplusa JY (2007) Phylogeny of the Genus Aphis Linnaeus, 1758 (Homoptera: Aphididae) inferred from mitochondrial DNA sequences. Molecular phylogenetics and evolution 42(3): 598-611.
11. Eastop VF (1979) Key to the genera of the subtribe Aphidina (Homoptera). Systematic Entomology 4: 379-388. doi:10.1111/j.1365-3113.1979.tb00621.x
12. Favret C, Voegtlin DJ (2004) Speciation by host-switching in Cinara (Insecta: Hemiptera: Aphididae). Molecular Phylogenetics and Evolution 32(1): 139-151. doi: 10.1016/j. ympev.2003.12.005
13. Foottit RG, Halbert SE, Miller GL, Maw E, Russell LM (2006) Adventive aphids (Hemiptera: Aphididae) of America North of Mexico. Proceedings of the Entomological Society of Washington 108(3): 583-610.
14. Foottit RG, Maw HEL, von Dohlen CD, Hebert PDN (2008) Species identification of aphids (Insecta: Hemiptera: Aphididae) through DNA barcodes. Molecular Ecology Resources 8(6): 1189-1201. doi:10.1111/j.1755-0998.2008.02297.x
15. Foster BT, Cognato AI, Gold RE (2004) DNA-Based Identification of the Eastern Subterranean Termite, Reticulitermes flavipes (Isoptera: Rhinotermitidae). Journal of Economic Entomology 97(1): 95-101. doi:10.1603/0022-0493-97.1.95
16. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America 103(4): 968-971. doi:10.1073/pnas.0510466103
17. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic acids symposium series 41: 95-98.
18. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003a) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B 270(1512): 313-321. doi:10.1098/rspb.2002.2218
19. Hebert PDN, Ratnasingham S, de Waard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London, Series B 270 (Supp l.): s96-s99. doi:10.1098/rsbl.2003.0025
20. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004a) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes ulgerator. Proceedings of the National Academy of Sciences of the United States of America, 101(41): 14812-14817. doi:10.1073/pnas.0406166101
21. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004b) Identification of birds through DNA barcodes. PLoS Biology 2(10): 1657-1663. doi:10.1371/journal.pbio.0020312
22. Heie OE (1986) The Aphidoidea (Hemiptera) of Fennoscandia and Denmark. 3. Family Aphididae: subfamily Pterocommatinae & tribe Aphidini of subfamily Aphidinae. Fauna ntomologica Scandinavica 17: 1-314.
23. Hille Ris Lambers D (1966) A new genus and species of Aphididae (Homoptera) from Turkey. Isreal J. Agric. Res. 16: 25-27.
24. Hogg ID, Hebert PDN (2004) Biological identification of springtails (Hexapoda: Collembola) from the Canadian Arctic, using mitochondrial DNA barcodes. Canadian Journal of Zoology 82: 749-754. doi:10.1139/z04-041
25. Kadyrbekov RKh, Renxin H, Shao H (2002) To aphid fauna (Homoptera, Aphididae) of Xinjiang- Uygur region of China. Tethys Entomological Research 6: 13-32.
26. Kim H, Lee S (2008) A molecular phylogeny of the tribe Aphidini (Insecta: Hemiptera: Aphididae) based on the mitochondrial tRNA/COII, 12S/16S and the nuclear EF1a genes. Systematic Entomology 33: 711-721. doi:10.1111/j.1365-3113.2008.00440.x
27. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16(2): 111-120. doi:10.1007/BF01731581
28. Messing RH, Tremblay MN, Mondor EB, Foottit RG, Pike KS (2007) Invasive aphids attack native Hawaiian plants. Biological Invasions 9(5): 601-607. doi:10.1007/s10530-006-9045-1
29. Monaghan MT, Balke M, Gregory TR, Vogler AP (2005) DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Philosophical Transactions of the Royal Society of London. Series B 360(1462): 1925-1933. doi:10.1098/rstb.2005.1724
30. Moritz C, Cicero C (2004) DNA Barcoding: Promise and Pitfalls. PLoS Biology 2(10): 1529-1531. doi:10.1371/journal.pbio.0020354
31. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York, 332pp.
32. Remaudière G, Remaudière M (1997) Catalogue of the World's Aphididae. Homoptera Aphidoidea. INRA, Paris, 473 pp.
33. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbour Laboratory Press, New York, 1659pp.
34. Schindel DE, Miller SE (2005) DNA barcoding a useful tool for taxonomists. Nature 435: 17. doi:10.1038/435017b
35. Shaposhoikov GKh (1964) Suborder Aphidinae. In: Bei-Beinko Gy (Ed) Key to the Insects of the European Part of USSR 1: 489-616.
36. Shufran KA, Burd JD, Anstead JA, Lushai G (2000) Mitochondrial DNA sequence divergence among greenbug (Homoptera: Aphididae) biotypes: evidence for host-adapted races. Insect Molecular Biology 9(2): 179-184. doi:10.1046/j.1365-2583.2000.00177.x
37. Stroyan HLG (1984) Aphids-Pterocommatinae and Aphidinae (Aphidini), Homoptera, Aphididae, Handbooks for the Identification of British Insects, Vol.2, part 6. Royal Entomological Society of London, London, 232 pp.
38. Vences M, Thomas M, van der Meijden A, Chiari Y, Vieites D (2005) Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians. Frontiers in Zoology 2(5): 1-12.
39. von Dohlen CD (2000) Molecular data support a rapid radiation of aphids in the Cretaceous and multiple origins of host alternation. Biological Journal of the Linnean Society 71(4): 689-717. doi:10.1006/bijl.2000.0470
40. von Dohlen CD, Kurosu U, Aoki S (2002) Phylogenetics and evolution of eastern Asian-eastern North American disjunct aphid tribe, Hormaphidini (Hemiptera: Aphididae). Molecular Phylogenetics and Evolution 23(2): 257-267. doi:10.1016/S1055-7903(02)00025-8
41. von Dohlen CD, Rowe CA, Heie OE (2006) A test of morphological hypotheses for tribal and subtribal relationships of Aphidinae (Insecta: Hemiptera: Aphididae) using DNA sequences. Molecular Phylogenetics and Evolution 38(2): 316-329. doi:10.1016/j. ympev.2005.04.035
42. Wang JF, Qiao GX (2009) DNA barcoding of genus Toxoptera Koch (Hemiptera: Aphididae): Identification and molecular phylogeny inferred from mitochondrial COI sequences. Insect Science 16(6): 475-484. doi:10.1111/j.1744-7917.2009.01270.x
43. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Philosophical Transactions of Royal Society, Series B 360 (1462): 1847-1857. doi:10.1098/rstb.2005.1716
44. Will KW, Rubinoff D (2004) Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 20(1): 47-55. doi:10.1111/ j.1096-0031.2003.00008.x
45. Xia X, Xie Z (2001) DAMBE: Data analysis in molecular biology and evolution. Journal of Heredity 92(4): 371-373. doi:10.1093/jhered/92.4.371
46. Zhang GX, Zhong TS (1981) Studies on Chinese Aphis craccivora complex with descriptions of two new species and two new subspecies. Sinozoologia 1: 39-43.
47. Zhang GX, Zhong TS (1983) Economic Insect Fauna of China, Fasc.25, Homoptera: Aphidinea, Part 1. [In Chinese.] Science Press, Beijing, 387pp.
48. Zhang HC, Qiao GX (2007a) Molecular phylogeny of Fordini (Hemiptera: Aphididae: Pemphiginae) inferred from nuclear gene EF-1α and mitochondrial gene COI. Bulletin of Entomological Research 97(4): 379-386. doi:10.1017/S0007485307005020
49. Zhang HC, Qiao GX (2007b) Systematic status of genus Formosaphis Takahashi and evolution of galls based on the molecular phylogeny of Pemphigini (Hemiptera: Aphididae: Eriosomatinae). Systematic Entomology 32(4): 690-699. doi:10.1111/j.1365-3113.2007.00390.x
50. Zhang HH, Huang XL, Jiang LY, Qiao GX, Zheng ZM (2010) Subspecies differentiation of Aphis fabae Scopoli (Hemiptera: Aphididae) based on morphological and molecular data. Acta Zootaxonomic Sinica, 35(3): 537-545.
51. Zhang LK, Zhang GX (2000) New recorded of the genus Swirskiaphis Hille Ris Lambers with a description of one new species from China (Homoptera: Aphididae). Acta Entonmologica Sinica, 43(3): 305-308.
52. Zwickl DJ, Hillis DM (2002) Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology 51(4): 588-598. doi:10.1080/10635150290102339