메뉴 건너뛰기




Volumn 765, Issue , 2011, Pages 83-97

Microarray-Based Genetic Footprinting Strategy to Identify Strain Improvement Genes after Competitive Selection of Transposon Libraries

Author keywords

Bacterial genetics; Escherichia coli; Genetic footprinting; Microarray analysis; Statistics; Strain engineering; Transposon

Indexed keywords

ARTICLE; DNA FOOTPRINTING; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETIC SELECTION; GENETICS; TRANSPOSON;

EID: 80052941985     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-197-0_6     Document Type: Chapter
Times cited : (1)

References (25)
  • 1
    • 66249098133 scopus 로고    scopus 로고
    • Genetic architecture of intrinsic antibiotic susceptibility
    • Girgis H. S., Hottes A. K., and Tavazoie S. (2009) Genetic architecture of intrinsic antibiotic susceptibility. PLoS One 4, e5629.
    • (2009) Plos One , vol.4
    • Girgis, H.S.1    Hottes, A.K.2    Tavazoie, S.3
  • 3
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang H. H., Isaacs F. J., Carr P. A., Sun Z. Z., Xu G., Forest C. R., and Church G. M. (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature 460, 894–898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 4
    • 0037154255 scopus 로고    scopus 로고
    • A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae
    • Akerley B. J., Rubin E. J., Novick V. L., Amaya K., Judson N., and Mekalanos J. J. (2002) A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae. Proc. Natl. Acad. Sci. U. S. A. 99, 966–971.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 966-971
    • Akerley, B.J.1    Rubin, E.J.2    Novick, V.L.3    Amaya, K.4    Judson, N.5    Mekalanos, J.J.6
  • 5
    • 9144262494 scopus 로고    scopus 로고
    • Identification of Escherichia coli O157: H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis
    • Dziva F., van Diemen P. M., Stevens M. P., Smith A. J., and Wallis T. S. (2004) Identification of Escherichia coli O157: H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis. Microbiology 150, 3631–3645.
    • (2004) Microbiology , vol.150 , pp. 3631-3645
    • Dziva, F.1    van Diemen, P.M.2    Stevens, M.P.3    Smith, A.J.4    Wallis, T.S.5
  • 6
    • 0035339417 scopus 로고    scopus 로고
    • Adaptation of signature-tagged mutagenesis to Escherichia coli K1 and the infant-rat model of invasive disease
    • Gonzalez M. D., Lichtensteiger C. A., and Vimr E. R. (2001) Adaptation of signature-tagged mutagenesis to Escherichia coli K1 and the infant-rat model of invasive disease. FEMS Microbiol. Lett. 198, 125–128.
    • (2001) FEMS Microbiol. Lett. , vol.198 , pp. 125-128
    • Gonzalez, M.D.1    Lichtensteiger, C.A.2    Vimr, E.R.3
  • 8
    • 9244239747 scopus 로고    scopus 로고
    • Global transposon mutagenesis and essential gene analysis of Helicobacter pylori
    • Salama N. R., Shepherd B., and Falkow S. (2004) Global transposon mutagenesis and essential gene analysis of Helicobacter pylori. J. Bacteriol. 186, 7926–7935.
    • (2004) J. Bacteriol. , vol.186 , pp. 7926-7935
    • Salama, N.R.1    Shepherd, B.2    Falkow, S.3
  • 10
    • 34848889244 scopus 로고    scopus 로고
    • A comprehensive genetic characterization of bacterial motility
    • Girgis H. S., Liu Y., Ryu W. S., and Tavazoie S. (2007) A comprehensive genetic characterization of bacterial motility. PLoS Genet. 3, 1644–1660.
    • (2007) Plos Genet , vol.3 , pp. 1644-1660
    • Girgis, H.S.1    Liu, Y.2    Ryu, W.S.3    Tavazoie, S.4
  • 11
    • 33847624216 scopus 로고    scopus 로고
    • Screening transposon mutant libraries using full-genome oligonucleotide microarrays
    • Winterberg K. M., and Reznikoff W. S. (2007) Screening transposon mutant libraries using full-genome oligonucleotide microarrays. Methods Enzymol. 421, 110–125.
    • (2007) Methods Enzymol , vol.421 , pp. 110-125
    • Winterberg, K.M.1    Reznikoff, W.S.2
  • 12
    • 33847669361 scopus 로고    scopus 로고
    • Using genomic microarrays to study insertional/ transposon mutant libraries
    • Baldwin D. N., and Salama N. R. (2007) Using genomic microarrays to study insertional/ transposon mutant libraries. Methods Enzymol. 421, 90–110.
    • (2007) Methods Enzymol , vol.421 , pp. 90-110
    • Baldwin, D.N.1    Salama, N.R.2
  • 13
    • 33846060705 scopus 로고    scopus 로고
    • Normalization of microarray data: Single-labeled and dual-labeled arrays
    • Do J. H., and Choi D. K. (2006) Normalization of microarray data: single-labeled and dual-labeled arrays. Mol. Cells. 22, 254–261.
    • (2006) Mol. Cells. , vol.22 , pp. 254-261
    • Do, J.H.1    Choi, D.K.2
  • 15
    • 33748445546 scopus 로고    scopus 로고
    • Normalization and quantification of differential expression in gene expression microarrays
    • Steinhoff C., and Vingron M. (2006) Normalization and quantification of differential expression in gene expression microarrays. Brief Bioinform. 7, 166–177.
    • (2006) Brief Bioinform , vol.7 , pp. 166-177
    • Steinhoff, C.1    Vingron, M.2
  • 16
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher V. G., Tibshirani R., and Chu G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U. S. A. 98, 5116–5121.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 17
    • 71149084382 scopus 로고    scopus 로고
    • Revealing global regulatory perturbations across human cancers
    • Goodarzi H., Elemento O., and Tavazoie S. (2009) Revealing global regulatory perturbations across human cancers. Mol. Cell. 36, 900–911.
    • (2009) Mol. Cell. , vol.36 , pp. 900-911
    • Goodarzi, H.1    Elemento, O.2    Tavazoie, S.3
  • 19
    • 67249091712 scopus 로고    scopus 로고
    • Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli
    • Amini S., Goodarzi H., and Tavazoie S. (2009) Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli. PLoS Pathog. 5, e1000432.
    • (2009) Plos Pathog , vol.5
    • Amini, S.1    Goodarzi, H.2    Tavazoie, S.3
  • 20
    • 0014413357 scopus 로고
    • Chromosome replication and the division cycle of Escherichia coli
    • Cooper S., and Helmstetter C. E. (1968) Chromosome replication and the division cycle of Escherichia coli B/r. J. Mol. Biol. 31, 519–540.
    • (1968) B/R. J. Mol. Biol. , vol.31 , pp. 519-540
    • Cooper, S.1    Helmstetter, C.E.2
  • 21
    • 67651102745 scopus 로고    scopus 로고
    • Protein occupancy landscape of a bacterial genome
    • Vora T., Hottes A. K., and Tavazoie S. (2009) Protein occupancy landscape of a bacterial genome. Mol. Cell. 35, 247–253.
    • (2009) Mol. Cell. , vol.35 , pp. 247-253
    • Vora, T.1    Hottes, A.K.2    Tavazoie, S.3
  • 22
    • 68349110791 scopus 로고    scopus 로고
    • Global discovery of adaptive mutations
    • Goodarzi H., Hottes A. K., and Tavazoie S. (2009) Global discovery of adaptive mutations. Nat. Methods 6, 581–583.
    • (2009) Nat. Methods , vol.6 , pp. 581-583
    • Goodarzi, H.1    Hottes, A.K.2    Tavazoie, S.3
  • 23
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • Hubbell E., Liu W. M., and Mei R. (2002) Robust estimators for expression analysis. Bioinformatics 18, 1585–1592.
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.M.2    Mei, R.3
  • 25
    • 85139088393 scopus 로고    scopus 로고
    • Affymetrix. (2002) Statistical Algorithms Description Document http://www.affyme-trix.com/support/technical/whitepapers/sadd_whitepaper.pdf Accessed June 22, 2010
    • Affymetrix. (2002) Statistical Algorithms Description Document http://www.affyme-trix.com/support/technical/whitepapers/sadd_whitepaper.pdf Accessed June 22, 2010


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.